Peripapillary atrophy detection by sparse biologically inspired feature manifold

IEEE Transactions on Medical Imaging

Volumn 31, Issue 12, 2012, Pages 2355-2365

  Cheng, Jun ^a   Tao, Dacheng ^b   Liu, Jiang ^a   Wong, Damon Wing Kee ^a   Tan, Ngan Meng ^a   Wong, Tien Yin ^c   Saw, Seang Mei ^d  

^a INSTITUTE FOR INFOCOMM RESEARCH   (Singapore)

^b UNIVERSITY OF TECHNOLOGY SYDNEY   (Australia)

^c SINGAPORE EYE RESEARCH INSTITUTE   (Singapore)

^d NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Author; please supply index terms keywords for your paper. To download the IEEE Taxonomy go to http: www.ieee.org documents 2009Taxonomy v101.pdf

Indexed keywords

AUTHOR; AUTOMATIC DETECTION; BIOLOGICALLY INSPIRED; EUCLIDEAN DISTANCE; EYE DISEASE; FOCAL REGIONS; HIGH DIMENSIONAL SPACES; INDEX TERMS; LABEL INFORMATION; LOW DIMENSIONAL; RETINAL IMAGE; SAMPLE DISTRIBUTIONS; SCREENING PROGRAMS; TRANSFER LEARNING; VISUAL INFORMATION; VISUAL PERCEPTION;

DIAGNOSIS; DISCRIMINANT ANALYSIS; TISSUE;

OPHTHALMOLOGY;

ALGORITHM; ARTICLE; CHILD; FACTUAL DATABASE; HUMAN; IMAGE PROCESSING; METHODOLOGY; OPTIC DISK; OPTIC NERVE ATROPHY; PATHOLOGY; RETINA; RETINA DISEASE; VISUAL SYSTEM EXAMINATION;

ALGORITHMS; CHILD; DATABASES, FACTUAL; DIAGNOSTIC TECHNIQUES, OPHTHALMOLOGICAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; OPTIC ATROPHY; OPTIC DISK; RETINA; RETINAL DISEASES;

EID: 84870491726     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2012.2218118     Document Type: Article

References (56)

1. J. B. Jonas, G. C. Gusek, and G. O. H. Naumann, "Optic disc morphometry in high myopia, " Graefe's Arch. Clin. Exp. Ophthalmol., vol. 226, no. 6, pp. 587-590, 1988.
2. J. B. Jonas, M. C. Fernandez, and G. O. Naumann, "Glaucomatous parapapillary atrophy occurrence and correlations, " Arch. Oph-thalmol., vol. 110, pp. 214-222, 1992.
3. P. R. Healey, P. Mitchell, C. E. Gilbert, A. J. Lee, D. Ge, H. Snieder, T. D. Spector, and C. J. Hammond, "The inheritance of peripapillary atrophy, " Invest. Ophthalmol. Vis. Sci., vol. 48, no. 6, pp. 2529-2534, 2007. (Pubitemid 351261201)
4. T. Y. Wong et al., "Prevalence and risk factors for refractive errors in adult Chinese in Singapore, " Invest. Ophthalmol. Vis. Sci., pp. 41:2486-41:2494, 2000.
5. L. L. Lin, Y. F. Shih, C. K. Hsiao, and C. J. Chen, "Prevalence of myopia in Taiwanese schoolchildren: 1983 to 2000, " Ann. Acad. Med. Singapore, pp. 33:27-33:33, 2004.
6. C. Samarawickrama, P. Mitchell, L. Tong, G. Gazzard, L. Lim, T. Y. Wong, and S. M. Saw, "Myopia-related optic disc and retinal changes in adolescent children from Singapore, " Ophthalmology, vol. 118, pp. 2050-2057, 2011.
7. S. M. Hyung, D. M. Kim, C. Hong, and D. H. Youn, "Optic disc of the myopic eye: Relationship between refractive errors and morphometric characteristics, " J. Ophthalmol., vol. 6, pp. 32-35, 1992.
8. K. A. Rose, I. G. Morgan, J. Ip, A. Kifley, S. Huynh, W. Smith, and P. Mitchell, "Outdoor activity reduces the prevalence of myopia in children, " Ophthalmology, vol. 115, no. 8, pp. 1279-1285, 2008.
9. K. Hayashi, K. Ohno-Matsui, N. Shimada, M. Moriyama, A. Kojima, W. Hayashi, K. Yasuzumi, N. Nagaoka, N. Saka, T. Yoshida, T. Tokoro, and M. Mochizuki, "Long-term pattern of progression of myopic maculopathy: A natural history study., " Ophthalmology, vol. 117, pp. 1595-1611, 2010.
10. K. H. Park, G. Tomita, S. Y. Liou, and Y. Kitazawa, "Correlation between peripapillary atrophy and optic nerve damage in normal tension glaucoma, " Ophthalmology, pp. 1899-1906, 1996. (Pubitemid 26403746)
11. J. Liu et al., "Aglaia system architecture for glaucoma diagnosis, " in Proc. 2nd APSIPA Annu. Summit Conf., 2010, pp. 657-661.
12. J. Liu et al., "Automatic glaucoma diagnosis from fundus image, " in Int. Conf. IEEE Eng. in Med. and Bio. Soc., 2011, pp. 3383-3386.
13. J. Lowell, A. Hunter, D. Steel, A. Basu, R. Ryder, E. Fletcher, and L. Kennedy, "Optic nerve head segmentation., " IEEE Trans. Med. Imag., vol. 23, no. 2, pp. 256-264, Feb. 2004.
14. J. Cheng, J. Liu, D. W. K. Wong, F. Yin, C. Carol, M. Baskaran, T. Aung, and T. Y. Wong, "Automatic optic disc segmentation with peri-papillary atrophy elimination, " in Int. Conf. IEEE Eng. Med. Bio. Soc., 2011, pp. 6224-6227.
15. N. M. Tan, J. Liu, D. W. K. Wong, J. H. Lim, Z. Zhang, S. Lu, H. Li, S. M. Saw, T. Y. Wong, and L. Tong, "Automatic detection of pathological myopia using variational level set, " in Int. Conf. IEEE Eng. Med. Bio. Soc., 2009, pp. 3609-3612.
16. C. K. Lu, T. B. Tang, A. F. Murray, A. Laude, and B. Dhillon, "Automatic parapapillary atrophy shape detection and quantification in colour fundus images, " in IEEE Conf. Biomed. Circuits Syst., 2010, pp. 86-89.
17. T. F. Chan and L. A. Vese, "Active contours without edges, " IEEE Trans. Image Process., vol. 10, no. 2, pp. 266-277, Feb. 2001. (Pubitemid 32254596)
18. J. Liu, D. W. K. Wong, J. H. Lim, N. M. Tan, Z. Zhang, H. Li, F. Yin, B. H. Lee, S. M. Saw, L. Tong, and T. Y. Wong, "Detection of pathological myopia by Pamela with texture-based features through an SVM approach, " J. Healthcare Eng., vol. 1, no. 1, pp. 1-11, 2010.
19. C. Siagian and L. Itti, "Rapid biologically-inspired scene classification using features shared with visual attention, " IEEE Trans. Pattern Anal. Mach. Intell., vol. 31, no. 2, pp. 260-274, 2008.
20. D. Song and D. Tao, "Biologically inspired feature manifold for scene classification, " IEEE Trans. Image Process., vol. 19, no. 1, pp. 174-184, Jan. 2010.
21. Y. Mu and D. Tao, "Biologically inspired feature manifold for gait recongition, " Neurocomputing., vol. 73, pp. 895-902, 2010.
22. J. Cheng, D. Tao, J. Liu, D. W. K. Wong, B. H. Lee, M. Baskaran, T. Y. Wong, and T. Aung, "Focal biologically inspired feature for glaucoma type classification, " MICCAI 2011, vol. 6893, pt. III, pp. 91-98, 2011.
23. H. Zou, T. Hastie, and R. Tibshirani, "Sparse principle component analysis, " J. Computat. Graph. Stat., vol. 15, no. 2, pp. 265-286, 2006.
24. S. T. Roweis and L. K. Saul, "Nonlinear dimensionality reduction by locally linear embedding, " Science, vol. 290, pp. 2323-2326, 2000. (Pubitemid 32041578)
25. R. Fisher, "The use of multiple measurements in taxonomic problems, " Ann. Eugenics, pp. 179-188, 1936.
26. L. Clemmensen, T. Hastie, and B. Ersboll, Sparse discriminant analysis IMM, Danish Tech. Univ., Lyngby, Tech. Rep., 2008.
27. M. E. Aladjem, "Nonparametric discrimant analysis via recursive optimization of Patrick-Fisher distance, " IEEE Trans. Syst., Man, Cybern., vol. 28, no. 2, pp. 292-299, Apr. 1998. (Pubitemid 128748012)
28. S. Si, D. Tao, and B. Geng, "Bregman divergence-based regularization for transfer subspace learning, " IEEE Trans. Knowl. Data Eng., vol. 22, no. 7, pp. 929-942, Jul. 2010.
29. A. Hoover and M. Goldbaum, "Locating the optic nerve in a retinal image using the fuzzy convergence of the blood vessels, " IEEE Trans. Med. Imag., vol. 22, no. 8, pp. 951-958, Aug. 2003.
30. M. Foracchia, E. Grisan, and A. Ruggeri, "Detection of optic disc in retinal images by means of a geometrical model of vessel structure, " IEEE Trans. Med. Imag., vol. 23, no. 10, pp. 1189-1195, Oct. 2004.
31. Z. Zhang, B. H. Lee, J. Liu, D. W. K. Wong, N. M. Tan, J. H. Lim, F. Yin, W. M. Huang, and H. Li, "Optic disc region of interest localization in fundus image for glaucoma detection in argali, " in Proc. Int. Conf. Indust. Electron. Appl., 2010, pp. 1686-1689.
32. N. Patton, T. M. Aslam, T. MacGillivray, I. J. Deary, B. Dhillon, R. H. Eikelboom, K. Yogesan, and I. J. Constable, "Retinal image analysis: Concepts, applications and potential, " Progress Retinal Eye Res., vol. 25, no. 1, pp. 99-127, 2006. (Pubitemid 41566644)
33. H. Li and O. Chutatape, "Boundary detection of optic disc by a modified ASM method, " Pattern Recognit., vol. 36, pp. 2093-2104, 2003. (Pubitemid 36726826)
34. J. Xu, O. Chutatape, E. Sung, C. Zheng, and P. C. T. Kuan, "Optic disk feature extraction via modified deformable model technique for glaucoma analysis, " Pattern Recognit., vol. 40, pp. 2063-2076, 2007. (Pubitemid 46497239)
35. Z. Zhang, J. Liu, N. S. Cherian, Y. Sun, J. H. Lim, D. W. K. Wong, N. M. Tan, S. Lu, H. Li, and T. Y. Wong, "Convex hull based neuro-retinal optic cup ellipse optimization in glaucoma diagnosis, " in Int. Conf. IEEE Eng. Med. Biol. Soc., 2009, pp. 1441-1444.
36. X. Zhu and R. M. Rangayyan, "Detection of the optic disc in images of the retina using the Hough transform, " in Int. Conf. IEEE Eng. Med. Biol. Soc., 2008, pp. 3546-3549.
37. R. C. Gonzalez and R. E. Woods, Digital Image Processing. Upper Saddle River, NJ: Prentice Hall, 2002.
38. J. Canny, "A computational approach to edge detection, " IEEE Trans. Pattern Anal. Mach. Intell., vol. 8, no. 6, pp. 679-698, Nov. 1986.
39. L. Itti, C. Koch, and E. Niebur, "A model of saliency-based visual attention for rapid scene analysis, " IEEE Trans. Pattern Anal. Mach. In-tell., vol. 20, no. 11, pp. 1254-1259, Nov. 1998. (Pubitemid 128742001)
40. A. G. Leventhal, The Neural Basis of Visual Function. Boca Raton, FL: CRC Press, 1991.
41. E. H. Adelson, C. H. Anderson, J. R. Bergen, P. J. Burt, and J. M. Ogden, "Pyramid methods in image processing, " RCA Eng., vol. 29, no. 6, pp. 33-41, 1984.
42. D. Gabor, "Theory of communication, " J. IEE, vol. 93, pp. 429-459, 1946.
43. X. S. Zhou and T. S. Huang, "Small sample learning during multimedia retrieval using biasmap, " in IEEE Int. Conf. Comput. Vis. Pattern Recognit., 2001, vol. 1, pp. 11-17.
44. X. Tian, D. Tao, and Y. Rui, "Sparse transfer learning for interactive video search reranking, " ACM Trans. Multimedia Comput., Commun. Appl., vol. 8, no. 26, 2012.
45. J. B. Jonas, X. N. Nguyen, G. C. Gusek, and G. O. Naumann, "Parapap-illary chorioretinal atrophy in normal and glaucoma eyes: I Morpho-metric data, " Invest. Ophthalmol. Vis. Sci., vol. 30, no. 5, pp. 908-918, 1989. (Pubitemid 19140184)
46. T. Kubota, J. B. Jonas, and G. O. Naumann, "Direct clinico-histological correlation of parapapillary chorioretinal atrophy, " Br. J. Ophthalmol., vol. 77, no. 2, pp. 103-106, 1993. (Pubitemid 23077678)
47. T. Zhou, D. Tao, and X. Wu, "Manifold elastic net: A unified framework for sparse dimension reduction, " Data Min. Knowl. Discov., vol. 22, no. 3, pp. 340-371, 2011.
48. D. Tao, X. Tang, X. Li, and X. Wu, "Asymmetric bagging and random subspace for support vector machines-based relevance feedback in image retrieval, " IEEE Trans. Pattern Anal. Mach. Intell., vol. 28, no. 7, pp. 1088-1099, Jul. 2006.
49. J. Shlens, A tutorial on principal component analysis 2005.
50. A. Neumaier, "Solving ill-conditioned and singular linear systems: A tutorial on regularization, " SIAM Rev., vol. 40, pp. 636-666, 1998. (Pubitemid 128619822)
51. H. Zou and T. Hastie, "Regularization and variable selection via the elastic net, " J. R. Stat. Soc., vol. 67, pp. 301-320, 2005. (Pubitemid 40465877)
52. B. Efron, T. Hastie, and R. Tibshirani, "Least angle regression, " Ann. Stat., vol. 32, pp. 68-73, 2004.
53. C.-C. Chang and C.-J. Lin, LIBSVM: A library for support vector machines 2001 [Online]. Available: http://www.csie.ntu.edu.tw/cjlin/libsvm
54. E. Ojaimi, K. A. Rose, W. Smith, I. G. Morgan, F. J. Martin, and P. Mitchell, "Method for a population-based study of myopia and other eye conditions in school children: The sydney myopia study, " Ophthalmic Epidemiol., pp. 59-69, 2005. (Pubitemid 41702836)
55. K. Sjöstrand, Matlab implementation of LASSO, LARS, the Elastic Net and SPCA 2005.
56. X. D. Jiang, "Linear subspace learning-based dimensionality reduction, " IEEE Signal Process. Mag., vol. 28, pp. 16-26, 2011.