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Volumn 13, Issue 1, 2013, Pages 151-161

An extended multi-locus molecular typing schema for Streptococcus pneumoniae demonstrates that a limited number of capsular switch events is responsible for serotype heterogeneity of closely related strains from different countries

Author keywords

Capsular serotype; MLST; Molecular typing; Streptococcus pneumoniae

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL MEMBRANE; BACTERIAL STRAIN; CLONE; CLUSTER ANALYSIS; GENE LOCUS; GENETIC VARIABILITY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLOGEOGRAPHY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEROTYPE; STREPTOCOCCUS PNEUMONIAE;

EID: 84870307363     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.09.008     Document Type: Article
Times cited : (8)

References (34)
  • 1
    • 84861889976 scopus 로고    scopus 로고
    • A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria
    • Bennett J.S., Jolley K.A., Earle S.G., Corton C., Bentley S.D., Parkhill J., Maiden M.C. A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria. Microbiology 2011, 158:1570-1580.
    • (2011) Microbiology , vol.158 , pp. 1570-1580
    • Bennett, J.S.1    Jolley, K.A.2    Earle, S.G.3    Corton, C.4    Bentley, S.D.5    Parkhill, J.6    Maiden, M.C.7
  • 3
    • 1442299471 scopus 로고    scopus 로고
    • Streptococcus pneumoniae colonisation: the key to pneumococcal disease
    • Bogaert D., De Groot R., Hermans P.W. Streptococcus pneumoniae colonisation: the key to pneumococcal disease. Lancet Infect. Dis. 2004, 4:144-154.
    • (2004) Lancet Infect. Dis. , vol.4 , pp. 144-154
    • Bogaert, D.1    De Groot, R.2    Hermans, P.W.3
  • 4
    • 0038555738 scopus 로고    scopus 로고
    • Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clone-specific differences in invasive disease potential
    • Brueggemann A.B., Griffiths D.T., Meats E., Peto T., Crook D.W., Spratt B.G. Clonal relationships between invasive and carriage Streptococcus pneumoniae and serotype- and clone-specific differences in invasive disease potential. J. Infect. Dis. 2003, 187:1424-1432.
    • (2003) J. Infect. Dis. , vol.187 , pp. 1424-1432
    • Brueggemann, A.B.1    Griffiths, D.T.2    Meats, E.3    Peto, T.4    Crook, D.W.5    Spratt, B.G.6
  • 5
    • 37349058158 scopus 로고    scopus 로고
    • Vaccine escape recombinants emerge after pneumococcal vaccination in the United States
    • Brueggemann A.B., Pai R., Crook D.W., Beall B. Vaccine escape recombinants emerge after pneumococcal vaccination in the United States. PLoS Pathog. 2007, 3:e168.
    • (2007) PLoS Pathog. , vol.3
    • Brueggemann, A.B.1    Pai, R.2    Crook, D.W.3    Beall, B.4
  • 6
    • 0031962770 scopus 로고    scopus 로고
    • Recombinational exchanges at the capsular polysaccharide biosynthetic locus lead to frequent serotype changes among natural isolates of Streptococcus pneumoniae
    • Coffey T.J., Enright M.C., Daniels M., Morona J.K., Morona R., Hryniewicz W., Paton J.C., Spratt B.G. Recombinational exchanges at the capsular polysaccharide biosynthetic locus lead to frequent serotype changes among natural isolates of Streptococcus pneumoniae. Mol. Microbiol. 1998, 27:73-83.
    • (1998) Mol. Microbiol. , vol.27 , pp. 73-83
    • Coffey, T.J.1    Enright, M.C.2    Daniels, M.3    Morona, J.K.4    Morona, R.5    Hryniewicz, W.6    Paton, J.C.7    Spratt, B.G.8
  • 7
    • 0032413402 scopus 로고    scopus 로고
    • Molecular characterization of penicillin-resistant Streptococcus pneumoniae isolates causing respiratory disease in the United States
    • Corso A., Severina E.P., Petruk V.F., Mauriz Y.R., Tomasz A. Molecular characterization of penicillin-resistant Streptococcus pneumoniae isolates causing respiratory disease in the United States. Microb. Drug. Resist. 1998, 4:325-337.
    • (1998) Microb. Drug. Resist. , vol.4 , pp. 325-337
    • Corso, A.1    Severina, E.P.2    Petruk, V.F.3    Mauriz, Y.R.4    Tomasz, A.5
  • 10
    • 34249027580 scopus 로고    scopus 로고
    • Inference of bacterial microevolution using multilocus sequence data
    • Didelot X., Falush D. Inference of bacterial microevolution using multilocus sequence data. Genetics 2007, 175:1251-1266.
    • (2007) Genetics , vol.175 , pp. 1251-1266
    • Didelot, X.1    Falush, D.2
  • 11
    • 65549108485 scopus 로고    scopus 로고
    • Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14
    • Ding F., Tang P., Hsu M.H., Cui P., Hu S., Yu J., Chiu C.H. Genome evolution driven by host adaptations results in a more virulent and antimicrobial-resistant Streptococcus pneumoniae serotype 14. BMC Genomics 2009, 10:158.
    • (2009) BMC Genomics , vol.10 , pp. 158
    • Ding, F.1    Tang, P.2    Hsu, M.H.3    Cui, P.4    Hu, S.5    Yu, J.6    Chiu, C.H.7
  • 13
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 14
    • 0031764441 scopus 로고    scopus 로고
    • A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease
    • Enright M.C., Spratt B.G. A multilocus sequence typing scheme for Streptococcus pneumoniae: identification of clones associated with serious invasive disease. Microbiology 1998, 144(Pt 11):3049-3060.
    • (1998) Microbiology , vol.144 , Issue.PART 11 , pp. 3049-3060
    • Enright, M.C.1    Spratt, B.G.2
  • 15
    • 0034128665 scopus 로고    scopus 로고
    • Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data
    • Feil E.J., Smith J.M., Enright M.C., Spratt B.G. Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data. Genetics 2000, 154:1439-1450.
    • (2000) Genetics , vol.154 , pp. 1439-1450
    • Feil, E.J.1    Smith, J.M.2    Enright, M.C.3    Spratt, B.G.4
  • 16
    • 67650087598 scopus 로고    scopus 로고
    • Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance
    • Feng J., Lupien A., Gingras H., Wasserscheid J., Dewar K., Legare D., Ouellette M. Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance. Genome Res. 2009, 19:1214-1223.
    • (2009) Genome Res. , vol.19 , pp. 1214-1223
    • Feng, J.1    Lupien, A.2    Gingras, H.3    Wasserscheid, J.4    Dewar, K.5    Legare, D.6    Ouellette, M.7
  • 18
    • 0034274870 scopus 로고    scopus 로고
    • An open graph visualization system and its applications to software engineering
    • Gansner E.R., North S.C. An open graph visualization system and its applications to software engineering. Softw.: Pract. Exp. 2000, 30:1203-1233.
    • (2000) Softw.: Pract. Exp. , vol.30 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 19
    • 0030331026 scopus 로고    scopus 로고
    • Markov chain Monte Carlo methods in biostatistics
    • Gelman A., Rubin D.B. Markov chain Monte Carlo methods in biostatistics. Stat. Methods Med. Res. 1996, 5:339-355.
    • (1996) Stat. Methods Med. Res. , vol.5 , pp. 339-355
    • Gelman, A.1    Rubin, D.B.2
  • 25
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: scalable analysis of bacterial genome variation at the population level
    • Jolley K.A., Maiden M.C. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 2010, 11:595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 26
    • 0003430544 scopus 로고    scopus 로고
    • Finding Groups in Data: An Introduction to Cluster Analysis
    • Wiley Series in Probability and Statistics, Wiley-Interscience.
    • Kaufman, L., Rousseeuw, P., 2005. Finding Groups in Data: An Introduction to Cluster Analysis. Wiley Series in Probability and Statistics, Wiley-Interscience.
    • (2005)
    • Kaufman, L.1    Rousseeuw, P.2
  • 31
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 32
    • 10444224623 scopus 로고    scopus 로고
    • Displaying the relatedness among isolates of bacterial species - the eBURST approach
    • Spratt B.G., Hanage W.P., Li B., Aanensen D.M., Feil E.J. Displaying the relatedness among isolates of bacterial species - the eBURST approach. FEMS Microbiol. Lett. 2004, 241:129-134.
    • (2004) FEMS Microbiol. Lett. , vol.241 , pp. 129-134
    • Spratt, B.G.1    Hanage, W.P.2    Li, B.3    Aanensen, D.M.4    Feil, E.J.5
  • 34
    • 84862093048 scopus 로고    scopus 로고
    • Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information
    • Vogel U., Szczepanowski R., Claus H., Junemann S., Prior K., Harmsen D. Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information. J. Clin. Microbiol. 2012, 50:1889-1894.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 1889-1894
    • Vogel, U.1    Szczepanowski, R.2    Claus, H.3    Junemann, S.4    Prior, K.5    Harmsen, D.6


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