-
1
-
-
0001214792
-
Oxygen diffusion from roots of some British bog plants
-
Armstrong, W. (1964). Oxygen diffusion from roots of some British bog plants. Nature 204, 801.
-
(1964)
Nature
, vol.204
, pp. 801
-
-
Armstrong, W.1
-
2
-
-
70349964706
-
Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies
-
Baker, K. L., Langenheder, S., Nicol, G. W., Ricketts, D., Killham, K., Campbell, C. D., and Prosser, J. I. (2009). Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies. Soil Biol. Biochem. 41,2292-2298.
-
(2009)
Soil Biol. Biochem.
, vol.41
, pp. 2292-2298
-
-
Baker, K.L.1
Langenheder, S.2
Nicol, G.W.3
Ricketts, D.4
Killham, K.5
Campbell, C.D.6
Prosser, J.I.7
-
3
-
-
79952790445
-
Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp
-
Belova, S. E., Baani, M., Suzina, N. E., Bodelier, P. L. E., Liesack, W., and Dedysh, S. N. (2011). Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp. Environ. Microbiol. Rep. 3, 36-46.
-
(2011)
Environ. Microbiol. Rep.
, vol.3
, pp. 36-46
-
-
Belova, S.E.1
Baani, M.2
Suzina, N.E.3
Bodelier, P.L.E.4
Liesack, W.5
Dedysh, S.N.6
-
4
-
-
58149375678
-
Microbial iron redox cycling in a circumneutral-pH groundwater seep
-
Blothe, M., and Roden, E. E. (2009). Microbial iron redox cycling in a circumneutral-pH groundwater seep. Appl. Environ. Microbiol. 75, 468-473.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 468-473
-
-
Blothe, M.1
Roden, E.E.2
-
5
-
-
80053289554
-
Interactions between nitrogenous fertilizers and methane cycling in wetland and upland soils
-
Bodelier, P. L. E. (2011). Interactions between nitrogenous fertilizers and methane cycling in wetland and upland soils. Curr. Opin. Environ. Sustain. 3, 379-388.
-
(2011)
Curr. Opin. Environ. Sustain.
, vol.3
, pp. 379-388
-
-
Bodelier, P.L.E.1
-
6
-
-
84871943374
-
Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils
-
Bodelier, P. L. E., Bar-Gilissen, M. J., Meima-Franke, M., and Hordijk, K. (2012). Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils. Ecol. Evol. 2, 106-127.
-
(2012)
Ecol. Evol.
, vol.2
, pp. 106-127
-
-
Bodelier, P.L.E.1
Bar-Gilissen, M.J.2
Meima-Franke, M.3
Hordijk, K.4
-
7
-
-
84855492244
-
-
in Wetlands and Natural Resource Management, eds. J. T. A. Verheven, B. Beltman, R. Bobbink, and D. F. Whigham (Berlin: Springer)
-
Bodelier, P. L. E., Frenzel, P., Drake, H. L., Hurek, T., Kusel, K., Lovell, C., Megonigal, P., Reinhold-Hurek, B., and Sorrell, B. (2006). "Ecological aspects of microbes and microbial communities inhabiting the rhizos-phere of wetland plants," in Wetlands and Natural Resource Management, eds. J. T. A. Verheven, B. Beltman, R. Bobbink, and D. F. Whigham (Berlin: Springer), 205-238.
-
(2006)
Ecological aspects of microbes and microbial communities inhabiting the rhizos-phere of wetland plants
, pp. 205-238
-
-
Bodelier, P.L.E.1
Frenzel, P.2
Drake, H.L.3
Hurek, T.4
Kusel, K.5
Lovell, C.6
Megonigal, P.7
Reinhold-Hurek, B.8
Sorrell, B.9
-
8
-
-
79551630314
-
Beyond carbon and nitrogen: how the microbial energy economy couples elemental cycles in diverse ecosystems
-
Burgin, A. J., Yang, W. H., Hamilton, S. K., and Silver, W. L. (2011). Beyond carbon and nitrogen: how the microbial energy economy couples elemental cycles in diverse ecosystems. Front. Ecol. Environ. 9, 44-52.
-
(2011)
Front. Ecol. Environ.
, vol.9
, pp. 44-52
-
-
Burgin, A.J.1
Yang, W.H.2
Hamilton, S.K.3
Silver, W.L.4
-
9
-
-
66149172164
-
Iron oxyhydroxide mineralization on microbial extracellular polysaccharides
-
Chan, C. S., Fakra, S. C., Edwards, D. C., Emerson, D., and Banfield, J. E (2009). Iron oxyhydroxide mineralization on microbial extracellular polysaccharides. Geochim. Cos-mochim. Acta 73, 3807-3818.
-
(2009)
Geochim. Cos-mochim. Acta
, vol.73
, pp. 3807-3818
-
-
Chan, C.S.1
Fakra, S.C.2
Edwards, D.C.3
Emerson, D.4
Banfield, J.E.5
-
10
-
-
0031933632
-
Quantifying structural redundancy in ecological communities
-
Clarke, K. R., and Warwick, R. M. (1998). Quantifying structural redundancy in ecological communities. Oecologia 113, 278-289.
-
(1998)
Oecologia
, vol.113
, pp. 278-289
-
-
Clarke, K.R.1
Warwick, R.M.2
-
11
-
-
0035816173
-
A further biodiversity index applicable to species lists: variation in taxonomic distinctness
-
Clarke, K. R., and Warwick, R. M. (2001). A further biodiversity index applicable to species lists: variation in taxonomic distinctness. Mar. Ecol. Prog. Ser. 216,265-278.
-
(2001)
Mar. Ecol. Prog. Ser.
, vol.216
, pp. 265-278
-
-
Clarke, K.R.1
Warwick, R.M.2
-
12
-
-
22044444428
-
Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment
-
Coci, M., Riechmann, D., Bodelier, P. L. E., Stefani, S., Zwart, G., and Laanbroek, H. J. (2005). Effect of salinity on temporal and spatial dynamics of ammonia-oxidising bacteria from intertidal freshwater sediment. FEMS Microbiol. Ecol. 53, 359-368.
-
(2005)
FEMS Microbiol. Ecol.
, vol.53
, pp. 359-368
-
-
Coci, M.1
Riechmann, D.2
Bodelier, P.L.E.3
Stefani, S.4
Zwart, G.5
Laanbroek, H.J.6
-
13
-
-
35148855832
-
Microbial ecology of methanogens and methanotrophs
-
Conrad, R. (2007). Microbial ecology of methanogens and methanotrophs. Adv. Agron. 96, 1-63.
-
(2007)
Adv. Agron.
, vol.96
, pp. 1-63
-
-
Conrad, R.1
-
14
-
-
38949155147
-
Soil type links microbial colonization of rice roots to methane emission
-
Conrad, R., Klose, M., Noll, M., Kem-nitz, D., and Bodelier, P. L. E. (2008). Soil type links microbial colonization of rice roots to methane emission. Glob. Chang. Biol. 14, 657-669.
-
(2008)
Glob. Chang. Biol.
, vol.14
, pp. 657-669
-
-
Conrad, R.1
Klose, M.2
Noll, M.3
Kem-nitz, D.4
Bodelier, P.L.E.5
-
16
-
-
47349106407
-
Magnitude and biophysical regulators of methane emission and consumption in the Australian agricultural, forest, and submerged landscapes: a review
-
Dalal, R. C., Allen, D. E., Livesley, S. J., and Richards, G. (2008). Magnitude and biophysical regulators of methane emission and consumption in the Australian agricultural, forest, and submerged landscapes: a review. Plant Soil 309, 43-76.
-
(2008)
Plant Soil
, vol.309
, pp. 43-76
-
-
Dalal, R.C.1
Allen, D.E.2
Livesley, S.J.3
Richards, G.4
-
17
-
-
33947331719
-
Methylocystis heyeri sp nov., a novel type II methanotrophic bacterium possessing "signature" fatty acids of type I methanotrophs
-
Dedysh, S. N., Belova, S. E., Bodelier, P. L. E., Smirnova, K. V., Khmelenina, V. N., Chidthaisong, A., Trotsenko, Y. A., Liesack, W., and Dunfield, P. F. (2007). Methylocystis heyeri sp nov., a novel type II methanotrophic bacterium possessing "signature" fatty acids of type I methanotrophs. Int. I Syst. Evol. Microbiol. 57, 472-479.
-
(2007)
Int. I Syst. Evol. Microbiol.
, vol.57
, pp. 472-479
-
-
Dedysh, S.N.1
Belova, S.E.2
Bodelier, P.L.E.3
Smirnova, K.V.4
Khmelenina, V.N.5
Chidthaisong, A.6
Trotsenko, Y.A.7
Liesack, W.8
Dunfield, P.F.9
-
18
-
-
0030619849
-
Organism-induced accumulation of iron, zinc and arsenic in wetland soils
-
Doyle, M. O., and Otte, M. L. (1997). Organism-induced accumulation of iron, zinc and arsenic in wetland soils. Environ. Pollut. 96, 1-11.
-
(1997)
Environ. Pollut.
, vol.96
, pp. 1-11
-
-
Doyle, M.O.1
Otte, M.L.2
-
19
-
-
77957937698
-
Iron-oxidizing bacteria: an environmental and genomic perspective
-
Emerson, D., Fleming, E. J., and McBeth, J. M. (2010). Iron-oxidizing bacteria: an environmental and genomic perspective. Annu. Rev. Microbiol. 64, 561-583.
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 561-583
-
-
Emerson, D.1
Fleming, E.J.2
McBeth, J.M.3
-
20
-
-
0030734782
-
Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH
-
Emerson, D., and Moyer, C. (1997). Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH. Appl. Environ. Microbiol. 63, 4784-4792.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4784-4792
-
-
Emerson, D.1
Moyer, C.2
-
22
-
-
77955924294
-
Spatial patterns of soil attributes and components in a mangrove system in Southeast Brazil (Sao Paulo)
-
Ferreira, T. O., Otero, X. L., De Souza, V. S., Vidal-Torrado, P., Macias, F., and Firme, L. P. (2010). Spatial patterns of soil attributes and components in a mangrove system in Southeast Brazil (Sao Paulo). J. Soils Sediments 10,995-1006.
-
(2010)
J. Soils Sediments
, vol.10
, pp. 995-1006
-
-
Ferreira, T.O.1
Otero, X.L.2
De Souza, V.S.3
Vidal-Torrado, P.4
Macias, F.5
Firme, L.P.6
-
23
-
-
79952757641
-
What's new is old: resolving the Identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH
-
doi:10.1371/journal.pone.0017769
-
Fleming, E. J., Langdon, A. E., Martinez-Garcia, M., Stepanauskas, R., Poul-ton, N. J., Masland, E. D. P., and Emerson, D. (2011). What's new is old: resolving the Identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH. PLoS ONE 6, e17769. doi:10.1371/journal.pone.0017769
-
(2011)
PLoS ONE
, vol.6
-
-
Fleming, E.J.1
Langdon, A.E.2
Martinez-Garcia, M.3
Stepanauskas, R.4
Poul-ton, N.J.5
Masland, E.D.P.6
Emerson, D.7
-
24
-
-
23844499971
-
Formation and occurrence of biogenic iron-rich minerals
-
Fortin, D., and Langley, S. (2005). Formation and occurrence of biogenic iron-rich minerals. Earth Sci. Rev. 72, 1-19.
-
(2005)
Earth Sci. Rev.
, vol.72
, pp. 1-19
-
-
Fortin, D.1
Langley, S.2
-
25
-
-
0037721460
-
Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field
-
Franklin, R. B., and Mills, A. L. (2003). Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field. FEMS Microbiol. Ecol. 44, 335-346.
-
(2003)
FEMS Microbiol. Ecol.
, vol.44
, pp. 335-346
-
-
Franklin, R.B.1
Mills, A.L.2
-
26
-
-
80051471039
-
Relevance of soil physical properties for the microbial oxidation of methane in landfill covers
-
Gebert, J., Groengroeft, A., and Pfeif-fer, E. M. (2011). Relevance of soil physical properties for the microbial oxidation of methane in landfill covers. Soil Biol. Biochem. 43, 1759-1767.
-
(2011)
Soil Biol. Biochem.
, vol.43
, pp. 1759-1767
-
-
Gebert, J.1
Groengroeft, A.2
Pfeif-fer, E.M.3
-
27
-
-
33751224447
-
Linking soil process and microbial ecology in freshwater wetland ecosystems
-
Gutknecht, J. L. M., Goodman, R. M., and Balser, T. C. (2006). Linking soil process and microbial ecology in freshwater wetland ecosystems. Plant Soil 289, 17-34.
-
(2006)
Plant Soil
, vol.289
, pp. 17-34
-
-
Gutknecht, J.L.M.1
Goodman, R.M.2
Balser, T.C.3
-
28
-
-
56649085249
-
Environmental and anthropogenic controls over bacterial communities in wetland soils
-
Hartman, W. H., Richardson, C. J.,Vil-galys, R., and Bruland, G. L. (2008). Environmental and anthropogenic controls over bacterial communities in wetland soils. Proc. Natl. Acad. Sci. U.S.A. 105, 17842-17847.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 17842-17847
-
-
Hartman, W.H.1
Richardson, C.J.2
Vil-galys, R.3
Bruland, G.L.4
-
29
-
-
79953029779
-
Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning
-
Ho, A., Lüke, C., and Frenzel, P. (2011). Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning. ISMEJ. 5, 750-758.
-
(2011)
ISMEJ
, vol.5
, pp. 750-758
-
-
Ho, A.1
Lüke, C.2
Frenzel, P.3
-
30
-
-
1942443842
-
Community analysis of methanogenic archaea within a riparian flooding gradient
-
Kemnitz, D., Chin, K. J., Bodelier, P., and Conrad, R. (2004). Community analysis of methanogenic archaea within a riparian flooding gradient. Environ. Microbiol. 6, 449-461.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 449-461
-
-
Kemnitz, D.1
Chin, K.J.2
Bodelier, P.3
Conrad, R.4
-
31
-
-
77953324129
-
Biogeochem-istry of paddy soils
-
Kogel-Knabner, I., Amelung, W., Cao, Z. H., Fiedler, S., Frenzel, P., Jahn, R., Kalbitz, K., Kolbl, A., and Schloter, M. (2010). Biogeochem-istry of paddy soils. Geoderma 157, 1-14.
-
(2010)
Geoderma
, vol.157
, pp. 1-14
-
-
Kogel-Knabner, I.1
Amelung, W.2
Cao, Z.H.3
Fiedler, S.4
Frenzel, P.5
Jahn, R.6
Kalbitz, K.7
Kolbl, A.8
Schloter, M.9
-
32
-
-
0038221311
-
Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays
-
Kolb, S., Knief, C., Stubner, S., and Conrad, R. (2003). Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays. Appl. Environ. Microbiol. 69, 2423-2429.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2423-2429
-
-
Kolb, S.1
Knief, C.2
Stubner, S.3
Conrad, R.4
-
33
-
-
73149099698
-
Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes
-
Laanbroek, H. J. (2010). Methane emission from natural wetlands: interplay between emergent macrophytes and soil microbial processes. A mini-review. Ann. Bot. 105, 141-153.
-
(2010)
A mini-review. Ann. Bot.
, vol.105
, pp. 141-153
-
-
Laanbroek, H.J.1
-
35
-
-
78149435472
-
Characterization of bacterial community structure in a drinking water distribution system during an occurrence of Red Water
-
Li, D., Li, Z., Yu, J., Cao, N., Liu, R., and Yang, M. (2010). Characterization of bacterial community structure in a drinking water distribution system during an occurrence of Red Water. Appl. Environ. Microbiol. 76, 7171-7180.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7171-7180
-
-
Li, D.1
Li, Z.2
Yu, J.3
Cao, N.4
Liu, R.5
Yang, M.6
-
36
-
-
0030867481
-
Microbial Fe(III) reduction in subsurface environments
-
Lovley, D. R. (1997). Microbial Fe(III) reduction in subsurface environments. FEMS Microbiol. Rev. 20, 305-313.
-
(1997)
FEMS Microbiol. Rev.
, vol.20
, pp. 305-313
-
-
Lovley, D.R.1
-
37
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S., Jobb, G., Forster, W., Brettske, I., Ger-ber, S., Ginhart, A. W., Gross, O., Grumann, S., Hermann, S., Jost, R., Konig, A., Liss, T., Lussmann, R., May, M., Nonhoff, B., Reichel, B., Strehlow, R., Stamatakis, A., Stuck-mann, N., Vilbig, A., Lenke, M., Ludwig, T., Bode, A., and Schleifer, K. H. (2004). ARB: a software environment for sequence data. Nucleic Acids Res. 32, 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, B.A.6
Lai, T.7
Steppi, S.8
Jobb, G.9
Forster, W.10
Brettske, I.11
Gerber, S.12
Ginhart, A.W.13
Gross, O.14
Grumann, S.15
Hermann, S.16
Jost, R.17
Konig, A.18
Liss, T.19
Lussmann, R.20
May, M.21
Nonhoff, B.22
Reichel, B.23
Strehlow, R.24
Stamatakis, A.25
Stuckmann, N.26
Vilbig, A.27
Lenke, M.28
Ludwig, T.29
Bode, A.30
Schleifer, K.H.31
more..
-
38
-
-
80052782154
-
Potential of pmoAamplicon pyrosequencing for methanotroph diversity studies
-
Lüke, C., and Frenzel, P. (2011). Potential of pmoAamplicon pyrosequencing for methanotroph diversity studies. Appl. Environ. Microbiol. 77, 6305-6309.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 6305-6309
-
-
Lüke, C.1
Frenzel, P.2
-
39
-
-
77953322073
-
Biogeography of wetland rice methanotrophs
-
Lüke, C., Krause, S., Cavigiolo, S., Greppi, D., Lupotto, E., and Frenzel, P. (2010). Biogeography of wetland rice methanotrophs. Environ. Microbiol. 12, 862-872.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 862-872
-
-
Lüke, C.1
Krause, S.2
Cavigiolo, S.3
Greppi, D.4
Lupotto, E.5
Frenzel, P.6
-
40
-
-
77950234244
-
Ecosystem engineering by tubificid worms stimulates macro-phyte growth in poorly oxygenated wetland sediments
-
Mermillod-Blondin, F., and Lemoine, D. G. (2010). Ecosystem engineering by tubificid worms stimulates macro-phyte growth in poorly oxygenated wetland sediments. Funct. Ecol. 24, 444-453.
-
(2010)
Funct. Ecol.
, vol.24
, pp. 444-453
-
-
Mermillod-Blondin, F.1
Lemoine, D.G.2
-
41
-
-
33144475258
-
Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils
-
Mohanty, S. R., Bodelier, P. L. E., Floris, V., and Conrad, R. (2006). Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils. Appl. Environ. Microbiol. 72, 1346-1354.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1346-1354
-
-
Mohanty, S.R.1
Bodelier, P.L.E.2
Floris, V.3
Conrad, R.4
-
42
-
-
0027460328
-
Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of poly-merase chain reaction-amplified genes-coding for 16s ribosomal-RNA
-
Muyzer, G., Dewaal, E. C., and Uitterlinden, A. G. (1993). Profiling of complex microbial-populations by denaturing gradient gel-electrophoresis analysis of poly-merase chain reaction-amplified genes-coding for 16s ribosomal-RNA. Appl. Environ. Microbiol. 59, 695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
Dewaal, E.C.2
Uitterlinden, A.G.3
-
43
-
-
0036327469
-
Life at the energetic edge: kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhi-zosphere
-
Neubauer, S. C., Emerson, D., and Megonigal, J. P. (2002). Life at the energetic edge: kinetics of circumneutral iron oxidation by lithotrophic iron-oxidizing bacteria isolated from the wetland-plant rhi-zosphere. Appl. Environ. Microbiol. 68,3988-3995.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3988-3995
-
-
Neubauer, S.C.1
Emerson, D.2
Megonigal, J.P.3
-
44
-
-
33847387109
-
Returning to their roots: iron-oxidizing bacteria enhance short-term plaque formation in the wetland-plant rhizosphere
-
Neubauer, S. C., Toledo-Duran, G. E., Emerson, D., and Megonigal, J. P. (2007). Returning to their roots: iron-oxidizing bacteria enhance short-term plaque formation in the wetland-plant rhizosphere. Geomicrobiol. J. 24, 65-73.
-
(2007)
Geomicrobiol. J.
, vol.24
, pp. 65-73
-
-
Neubauer, S.C.1
Toledo-Duran, G.E.2
Emerson, D.3
Megonigal, J.P.4
-
45
-
-
78649704686
-
Environmental, genomic and taxonomic perspectives onmethanotrophicVerrucomi-crobia
-
Op den Camp, H. J. M., Islam, T., Stott, M. B., Harhangi, H. R., Hynes, A., Schouten, S., Jetten, M. S. M., Birkeland, N. K., Pol, A., and Dun-field, P. F. (2009). Environmental, genomic and taxonomic perspectives onmethanotrophicVerrucomi-crobia. Environ. Microbiol. Rep. 1, 293-306.
-
(2009)
Environ. Microbiol. Rep.
, vol.1
, pp. 293-306
-
-
Op den Camp, H.J.M.1
Islam, T.2
Stott, M.B.3
Harhangi, H.R.4
Hynes, A.5
Schouten, S.6
Jetten, M.S.M.7
Birkeland, N.K.8
Pol, A.9
Dun-field, P.F.10
-
46
-
-
78649694087
-
Impacts of inter- and intralabora-tory variations on the reproducibil-ity of microbial community analyses
-
Pan, Y., Bodrossy, L., Frenzel, P., Hestnes, A., Krause, S. B. M., Lüke, C., Meima-Franke, M., Siljanen, H., Svenning, M. M., and Bodelier, P. L. E. (2010). Impacts of inter- and intralabora-tory variations on the reproducibil-ity of microbial community analyses. Appl. Environ. Microbiol. 76, 7451-7458.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 7451-7458
-
-
Pan, Y.1
Bodrossy, L.2
Frenzel, P.3
Hestnes, A.4
Krause, S.B.M.5
Lüke, C.6
Meima-Franke, M.7
Siljanen, H.8
Svenning, M.M.9
Bodelier, P.L.E.10
-
47
-
-
71249135203
-
Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree
-
Philippot, L., Bru, D., Saby, N. P. A., Cuhel, J., Arrouays, D., Simek, M., and Hallin, S. (2009a). Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree. Environ. Microbiol. 11, 3096-3104.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 3096-3104
-
-
Philippot, L.1
Bru, D.2
Saby, N.P.A.3
Cuhel, J.4
Arrouays, D.5
Simek, M.6
Hallin, S.7
-
48
-
-
66649106734
-
Mapping field-scale spatial patterns of size and activity of the denitrifier community
-
Philippot, L., Cuhel, J., Saby, N. P. A., Cheneby, D., Chronakova, A., Bru, D., Arrouays, D., Martin-Laurent, E, and Simek, M. (2009b). Mapping field-scale spatial patterns of size and activity of the denitrifier community. Environ. Microbiol. 11, 1518-1526.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1518-1526
-
-
Philippot, L.1
Cuhel, J.2
Saby, N.P.A.3
Cheneby, D.4
Chronakova, A.5
Bru, D.6
Arrouays, D.7
Martin-Laurent, E.8
Simek, M.9
-
49
-
-
0034803155
-
Quantitative and qualitative microscale distribution of bacteria in soil
-
Ranjard, L., and Richaume, A. S. (2001). Quantitative and qualitative microscale distribution of bacteria in soil. Res. Microbiol. 152, 707-716.
-
(2001)
Res. Microbiol.
, vol.152
, pp. 707-716
-
-
Ranjard, L.1
Richaume, A.S.2
-
51
-
-
0002062430
-
geoR: a package for geostatistical analysis
-
Ribeiro, J. R., and Diggle, P. J. (2001). geoR: a package for geostatistical analysis. R. I 1, 1609-3631.
-
(2001)
R. I
, vol.1
, pp. 1609-3631
-
-
Ribeiro, J.R.1
Diggle, P.J.2
-
52
-
-
80051682782
-
2 feedback
-
2 feedback. Biogeo-sciences 8, 2137-2157.
-
(2011)
Biogeo-sciences
, vol.8
, pp. 2137-2157
-
-
Ringeval, B.1
Friedlingstein, P.2
Koven, C.3
Ciais, P.4
De Noblet-Ducoudre, N.5
Decharme, B.6
Cadule, P.7
-
53
-
-
0034530892
-
Microbial community dynamics in Mediterranean nutrient-enriched seawater meso-cosms: changes in the genetic diversity of bacterial populations
-
Schäfer, H., Bernard, L., Courties, C., Lebaron, P., Servais, P., Pukall, R., Stackebrandt, E., Troussellier, M., Guindulain, T., Vives-Rego, J., and Muyzer, G. (2001). Microbial community dynamics in Mediterranean nutrient-enriched seawater meso-cosms: changes in the genetic diversity of bacterial populations. FEMS Microbiol. Ecol. 34, 243-253.
-
(2001)
FEMS Microbiol. Ecol.
, vol.34
, pp. 243-253
-
-
Schäfer, H.1
Bernard, L.2
Courties, C.3
Lebaron, P.4
Servais, P.5
Pukall, R.6
Stackebrandt, E.7
Troussellier, M.8
Guindulain, T.9
Vives-Rego, J.10
Muyzer, G.11
-
54
-
-
77953215053
-
Methanotrophs and copper
-
Semrau, J. D., Dispirito, A. A., and Yoon, S. (2010). Methanotrophs and copper. FEMS Microbiol. Rev. 34, 496-531.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 496-531
-
-
Semrau, J.D.1
Dispirito, A.A.2
Yoon, S.3
-
55
-
-
78751687820
-
Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake
-
Siljanen, H. M. P., Saari, A., Krause, S., Lensu,A.,Abell, G. C. J., Bodrossy, L., Bodelier, P. L. E., and Martikainen, P. J. (2011). Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake. FEMS Microbiol. Ecol. 75,430-445.
-
(2011)
FEMS Microbiol. Ecol.
, vol.75
, pp. 430-445
-
-
Siljanen, H.M.P.1
Saari, A.2
Krause, S.3
Lensu, A.4
Abell, G.C.J.5
Bodrossy, L.6
Bodelier, P.L.E.7
Martikainen, P.J.8
-
56
-
-
80053123349
-
Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium
-
doi:10.1371/jour-nal.pone.0025386
-
Singer, E., Emerson, D., Webb, E. A., Barco, R. A., Kuenen, J. G., Nelson, W C, Chan, C. S., Comolli, L. R., Ferriera, S., Johnson, J., Heidelberg, J. F., and Edwards, K. J. (2011). Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium. PLoS ONE 6, e25386. doi:10.1371/jour-nal.pone.0025386
-
(2011)
PLoS ONE
, vol.6
-
-
Singer, E.1
Emerson, D.2
Webb, E.A.3
Barco, R.A.4
Kuenen, J.G.5
Nelson, W.C.6
Chan, C.S.7
Comolli, L.R.8
Ferriera, S.9
Johnson, J.10
Heidelberg, J.F.11
Edwards, K.J.12
-
57
-
-
0036418444
-
Evidence for rapid microscale bacterial redox cycling of iron in circumneutral environments
-
Sobolev, D., and Roden, E. E. (2002). Evidence for rapid microscale bacterial redox cycling of iron in circumneutral environments. Antonie Van Leeuwenhoek 81, 587-597.
-
(2002)
Antonie Van Leeuwenhoek
, vol.81
, pp. 587-597
-
-
Sobolev, D.1
Roden, E.E.2
-
58
-
-
71549171461
-
Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell
-
Steenbergh, A. K., Meima, M. M., Kamst, M., and Bodelier, P. L. E. (2010). Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell. FEMS Microbiol. Ecol. 71, 12-22.
-
(2010)
FEMS Microbiol. Ecol.
, vol.71
, pp. 12-22
-
-
Steenbergh, A.K.1
Meima, M.M.2
Kamst, M.3
Bodelier, P.L.E.4
-
59
-
-
2442490797
-
Redox chemistry in the root zone of a salt marsh sediment in the Tagus Estuary
-
Sundby, B., Vale, C., Caetano, M., and Luther, G. W (2003). Redox chemistry in the root zone of a salt marsh sediment in the Tagus Estuary, Portugal. Aquat. Geochem. 9, 257-271.
-
(2003)
Portugal. Aquat. Geochem.
, vol.9
, pp. 257-271
-
-
Sundby, B.1
Vale, C.2
Caetano, M.3
Luther, G.W.4
-
60
-
-
0017343370
-
Energy conservation in chemotrophic anaerobic bacteria
-
Thauer, R. K., Jungermann, K., and Decker, K. (1977). Energy conservation in chemotrophic anaerobic bacteria. Bacteriol. Rev. 41,100.
-
(1977)
Bacteriol. Rev.
, vol.41
, pp. 100
-
-
Thauer, R.K.1
Jungermann, K.2
Decker, K.3
-
61
-
-
0034893494
-
A mechanistic model on methane oxidation in a rice rhizosphere
-
van Bodegom, P., Goudriaan, J., and Leffelaar, P. (2001a). A mechanistic model on methane oxidation in a rice rhizosphere. Biogeochemistry 55, 145-177.
-
(2001)
Biogeochemistry
, vol.55
, pp. 145-177
-
-
van Bodegom, P.1
Goudriaan, J.2
Leffelaar, P.3
-
62
-
-
0035430952
-
Methane oxidation and the competition for oxygen in the rice rhizosphere
-
van Bodegom, P., Stams, F., Mollema, L., Boeke, S., and Leffelaar, P. (2001b). Methane oxidation and the competition for oxygen in the rice rhizosphere. Appl. Environ. Micro-biol. 67, 3586-3597.
-
(2001)
Appl. Environ. Micro-biol.
, vol.67
, pp. 3586-3597
-
-
van Bodegom, P.1
Stams, F.2
Mollema, L.3
Boeke, S.4
Leffelaar, P.5
-
64
-
-
67549134811
-
Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria
-
Wang, J. J., Muyzer, G., Bodelier, P. L. E., and Laanbroek, H. J. (2009). Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria. ISME J. 3, 715-725.
-
(2009)
ISME J
, vol.3
, pp. 715-725
-
-
Wang, J.J.1
Muyzer, G.2
Bodelier, P.L.E.3
Laanbroek, H.J.4
-
65
-
-
79953277313
-
Distribution and diversity of Gallionella -like neutrophilic iron oxidizers in a tidal freshwater marsh
-
Wang, J. J., Vollrath, S., Behrends, T., Bodelier, P. L. E., Muyzer, G., Meima-Franke, M., Den Oudsten, F., Van Cappellen, P., and Laanbroek, H. J. (2011). Distribution and diversity of Gallionella -like neutrophilic iron oxidizers in a tidal freshwater marsh. Appl. Environ. Microbiol. 77, 2337-2344.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 2337-2344
-
-
Wang, J.J.1
Vollrath, S.2
Behrends, T.3
Bodelier, P.L.E.4
Muyzer, G.5
Meima-Franke, M.6
Den Oudsten, F.7
Van Cappellen, P.8
Laanbroek, H.J.9
-
66
-
-
0042977474
-
Enumeration of Fe(II)-oxidizing and Fe(III)-reducing bacteria in the root zone of wetland plants: implications for a rhizosphere iron cycle
-
Weiss, J. V., Emerson, D., Backer, S. M., and Megonigal, J. P. (2003). Enumeration of Fe(II)-oxidizing and Fe(III)-reducing bacteria in the root zone of wetland plants: implications for a rhizosphere iron cycle. Biogeochemistry 64, 77-96.
-
(2003)
Biogeochemistry
, vol.64
, pp. 77-96
-
-
Weiss, J.V.1
Emerson, D.2
Backer, S.M.3
Megonigal, J.P.4
-
67
-
-
36849013617
-
Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Fer-ritrophicum radicicola gen. nov sp nov., and Sideroxydans paludicola sp nov
-
Weiss, J. V., Rentz, J. A., Plaia, T., Neubauer, S. C., Merrill-Floyd, M., Lilburn, T., Bradburne, C., Megonigal, J. P., and Emerson, D. (2007). Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Fer-ritrophicum radicicola gen. nov sp nov., and Sideroxydans paludicola sp nov. Geomicrobiol. J. 24, 559-570.
-
(2007)
Geomicrobiol. J.
, vol.24
, pp. 559-570
-
-
Weiss, J.V.1
Rentz, J.A.2
Plaia, T.3
Neubauer, S.C.4
Merrill-Floyd, M.5
Lilburn, T.6
Bradburne, C.7
Megonigal, J.P.8
Emerson, D.9
-
68
-
-
79959620844
-
Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning
-
Wessen, E., Soderstrom, M., Stenberg, M., Bru, D., Hellman, M., Welsh, A., Thomsen, F., Klemedtson, L., Philippot, L., and Hallin, S. (2011). Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning. ISME J. 5, 1213-1225.
-
(2011)
ISME J
, vol.5
, pp. 1213-1225
-
-
Wessen, E.1
Soderstrom, M.2
Stenberg, M.3
Bru, D.4
Hellman, M.5
Welsh, A.6
Thomsen, F.7
Klemedtson, L.8
Philippot, L.9
Hallin, S.10
-
69
-
-
0031854206
-
Rapid purification of DNA from soil for molecular biodiversity analysis
-
Yeates, C., and Gillings, M. R. (1998). Rapid purification of DNA from soil for molecular biodiversity analysis. Lett. Appl. Microbiol. 27, 49-53.
-
(1998)
Lett. Appl. Microbiol.
, vol.27
, pp. 49-53
-
-
Yeates, C.1
Gillings, M.R.2
|