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Volumn 113, Issue 6, 2012, Pages 1341-1351

The intestinal microbial diversity in mud crab (Scylla paramamosain) as determined by PCR-DGGE and clone library analysis

Author keywords

Intestine; Microbial diversity; Mud crab

Indexed keywords

CLONING; ELECTROPHORESIS; FARMS; LAKES; POLYMERASE CHAIN REACTION; POPULATION STATISTICS; SHELLFISH;

EID: 84869868909     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12008     Document Type: Article
Times cited : (80)

References (37)
  • 1
    • 29144445330 scopus 로고    scopus 로고
    • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample
    • Acinas, S.G., Sarma-Rupavtarm, R., Klepac-Ceraj, V. and Polz, M.F. (2005) PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Appl Environ Microbiol 71, 8966-8969.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8966-8969
    • Acinas, S.G.1    Sarma-Rupavtarm, R.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 44749084062 scopus 로고    scopus 로고
    • Studies on Bacillus subtilis and Lactobacillus acidophilus, as potential probiotics, on the immune response and resistance of Tilapia nilotica (Oreochromis niloticus) to challenge infections
    • Aly, S.M., Abdel-Galil Ahmed, Y., Abdel-Aziz Ghareeb, A. and Mohamed, M.F. (2008) Studies on Bacillus subtilis and Lactobacillus acidophilus, as potential probiotics, on the immune response and resistance of Tilapia nilotica (Oreochromis niloticus) to challenge infections. Fish Shellfish Immunol 25, 128-136.
    • (2008) Fish Shellfish Immunol , vol.25 , pp. 128-136
    • Aly, S.M.1    Abdel-Galil Ahmed, Y.2    Abdel-Aziz Ghareeb, A.3    Mohamed, M.F.4
  • 3
    • 0034666483 scopus 로고    scopus 로고
    • Cluster analysis, richness and biodiversity indexes derived from denaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process
    • Ampe, F. and Miambi, E. (2000) Cluster analysis, richness and biodiversity indexes derived from denaturing gradient gel electrophoresis fingerprints of bacterial communities demonstrate that traditional maize fermentations are driven by the transformation process. Int J Food Microbiol 60, 91-97.
    • (2000) Int J Food Microbiol , vol.60 , pp. 91-97
    • Ampe, F.1    Miambi, E.2
  • 5
    • 0034673747 scopus 로고    scopus 로고
    • Necrotizing fasciitis due to Photobacterium damsela in a man lashed by a stingray
    • Barber, G.R. and Swygert, J.S. (2000) Necrotizing fasciitis due to Photobacterium damsela in a man lashed by a stingray. N Engl J Med 342, 824.
    • (2000) N Engl J Med , vol.342 , pp. 824
    • Barber, G.R.1    Swygert, J.S.2
  • 6
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specfic 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Boon, N., Windt, W., Verstraete, W. and Top, E.M. (2002) Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specfic 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol Ecol 39, 101-112.
    • (2002) FEMS Microbiol Ecol , vol.39 , pp. 101-112
    • Boon, N.1    Windt, W.2    Verstraete, W.3    Top, E.M.4
  • 7
    • 31344455873 scopus 로고    scopus 로고
    • Microbial ecology of the gastrointestinal tract of fish and the potential application of prebiotics and probiotics in finfish aquaculture
    • Burr, G., Gatlin, D. and Ricke, S. (2005) Microbial ecology of the gastrointestinal tract of fish and the potential application of prebiotics and probiotics in finfish aquaculture. J World Aquac Soc 36, 425-436.
    • (2005) J World Aquac Soc , vol.36 , pp. 425-436
    • Burr, G.1    Gatlin, D.2    Ricke, S.3
  • 8
    • 78650098746 scopus 로고    scopus 로고
    • Isolation and characterization of new potential probiotic bacteria based on quorum-sensing system
    • Chu, W., Lu, F., Zhu, W. and Kang, C. (2011) Isolation and characterization of new potential probiotic bacteria based on quorum-sensing system. J Appl Microbiol 110, 202-208.
    • (2011) J Appl Microbiol , vol.110 , pp. 202-208
    • Chu, W.1    Lu, F.2    Zhu, W.3    Kang, C.4
  • 9
    • 33748765769 scopus 로고    scopus 로고
    • Comparison of two fingerprinting techniques, terminal restriction fragment length polymorphism and automated ribosomal intergenic spacer analysis, for determination of bacterial diversity in aquatic environments
    • Danovaro, R., Luna, G.M., Dell'Anno, A. and Pietrangeli, B. (2006) Comparison of two fingerprinting techniques, terminal restriction fragment length polymorphism and automated ribosomal intergenic spacer analysis, for determination of bacterial diversity in aquatic environments. Appl Environ Microbiol 72, 5982-5989.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5982-5989
    • Danovaro, R.1    Luna, G.M.2    Dell'Anno, A.3    Pietrangeli, B.4
  • 10
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community
    • Eichner, C.A., Erb, R.W., Timmis, K.N. and Wagner-Dobler, I. (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65, 102-109.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3    Wagner-Dobler, I.4
  • 11
    • 0026680522 scopus 로고
    • Effect of the cyanobacterial (blue-green algal) toxins from Microcystis aeruginosa on isolated enterocytes from the chicken small intestine
    • Falconer, I.R., Dornbusch, M., Moran, G. and Yeung, S.K. (1992) Effect of the cyanobacterial (blue-green algal) toxins from Microcystis aeruginosa on isolated enterocytes from the chicken small intestine. Toxicon 30, 790-793.
    • (1992) Toxicon , vol.30 , pp. 790-793
    • Falconer, I.R.1    Dornbusch, M.2    Moran, G.3    Yeung, S.K.4
  • 12
    • 33845676336 scopus 로고    scopus 로고
    • Characterisation of the dominant bacterial population in modified atmosphere packaged farmed halibut (Hippoglossus hippoglossus) based on 16S rDNA-DGGE
    • Hovda, M.B., Sivertsvik, M., Lunestad, B.T., Lorentzen, G. and Rosnes, J.T. (2007) Characterisation of the dominant bacterial population in modified atmosphere packaged farmed halibut (Hippoglossus hippoglossus) based on 16S rDNA-DGGE. Food Microbiol 24, 362-371.
    • (2007) Food Microbiol , vol.24 , pp. 362-371
    • Hovda, M.B.1    Sivertsvik, M.2    Lunestad, B.T.3    Lorentzen, G.4    Rosnes, J.T.5
  • 13
    • 0842308827 scopus 로고    scopus 로고
    • Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)
    • Huber, I., Spanggaard, B., Appel, K.F., Rossen, L., Nielsen, T. and Gram, L. (2004) Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum). J Appl Microbiol 96, 117-132.
    • (2004) J Appl Microbiol , vol.96 , pp. 117-132
    • Huber, I.1    Spanggaard, B.2    Appel, K.F.3    Rossen, L.4    Nielsen, T.5    Gram, L.6
  • 14
    • 34249947608 scopus 로고    scopus 로고
    • Parenteral long-acting amoxicillin reduces intestinal bacterial community diversity in piglets even 5 weeks after the administration
    • Janczyk, P., Pieper, R., Souffrant, W.B., Bimczok, D., Rothkötter, H.J. and Smidt, H. (2007) Parenteral long-acting amoxicillin reduces intestinal bacterial community diversity in piglets even 5 weeks after the administration. ISME J 1, 180-183.
    • (2007) ISME J , vol.1 , pp. 180-183
    • Janczyk, P.1    Pieper, R.2    Souffrant, W.B.3    Bimczok, D.4    Rothkötter, H.J.5    Smidt, H.6
  • 15
    • 34250639282 scopus 로고    scopus 로고
    • Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
    • Kim, D.H., Brunt, J. and Austin, B. (2007) Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss). J Appl Microbiol 102, 1654-1664.
    • (2007) J Appl Microbiol , vol.102 , pp. 1654-1664
    • Kim, D.H.1    Brunt, J.2    Austin, B.3
  • 17
    • 33749820461 scopus 로고    scopus 로고
    • Bacterial community along a historic lake sediment core of Ardley Island, west Antarctica
    • Li, S., Xiao, X., Yin, X. and Wang, F. (2006) Bacterial community along a historic lake sediment core of Ardley Island, west Antarctica. Extremophiles 10, 461-467.
    • (2006) Extremophiles , vol.10 , pp. 461-467
    • Li, S.1    Xiao, X.2    Yin, X.3    Wang, F.4
  • 18
    • 34547912857 scopus 로고    scopus 로고
    • Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis)
    • Li, K., Guan, W., Wei, G., Liu, B., Xu, J., Zhao, L. and Zhang, Y. (2007a) Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis). J Appl Microbiol 103, 675-682.
    • (2007) J Appl Microbiol , vol.103 , pp. 675-682
    • Li, K.1    Guan, W.2    Wei, G.3    Liu, B.4    Xu, J.5    Zhao, L.6    Zhang, Y.7
  • 19
    • 37149004637 scopus 로고    scopus 로고
    • Dietary supplementation of short-chain fructooligosaccharides influences gastrointestinal microbiota composition and immunity characteristics of pacific white shrimp, Litopenaeus vannamei, cultured in a recirculating system
    • Li, P., Burr, G.S., Gatlin, D.M., Hume, M.E., Patnaik, S., Castille, F.L. and Lawrence, A.L. (2007b) Dietary supplementation of short-chain fructooligosaccharides influences gastrointestinal microbiota composition and immunity characteristics of pacific white shrimp, Litopenaeus vannamei, cultured in a recirculating system. J Nutr 137, 2763-2768.
    • (2007) J Nutr , vol.137 , pp. 2763-2768
    • Li, P.1    Burr, G.S.2    Gatlin, D.M.3    Hume, M.E.4    Patnaik, S.5    Castille, F.L.6    Lawrence, A.L.7
  • 20
    • 57749209672 scopus 로고    scopus 로고
    • Infection with Hematodinium sp. in mud crabs Scylla serrata cultured in low salinity water in southern China
    • Li, Y., Xia, X., Wu, Q., Liu, W. and Lin, Y. (2008) Infection with Hematodinium sp. in mud crabs Scylla serrata cultured in low salinity water in southern China. Dis Aquat Organ 82, 145-150.
    • (2008) Dis Aquat Organ , vol.82 , pp. 145-150
    • Li, Y.1    Xia, X.2    Wu, Q.3    Liu, W.4    Lin, Y.5
  • 21
    • 84862800368 scopus 로고    scopus 로고
    • Molecular cloning and expression profiles of nitric oxide synthase (NOS) in mud crab Scylla paramamosain
    • Li, S., Zhang, Z., Li, C., Liu, W., Zhang, Y., Zheng, H., Li, Y. and Wen, X. (2012) Molecular cloning and expression profiles of nitric oxide synthase (NOS) in mud crab Scylla paramamosain. Fish Shellfish Immunol 32, 503-512.
    • (2012) Fish Shellfish Immunol , vol.32 , pp. 503-512
    • Li, S.1    Zhang, Z.2    Li, C.3    Liu, W.4    Zhang, Y.5    Zheng, H.6    Li, Y.7    Wen, X.8
  • 22
    • 0037650127 scopus 로고    scopus 로고
    • Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers
    • Liu, C., Song, Y., McTeague, M., Vu, A.W., Wexler, H. and Finegold, S.M. (2003) Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers. FEMS Microbiol Lett 222, 9-16.
    • (2003) FEMS Microbiol Lett , vol.222 , pp. 9-16
    • Liu, C.1    Song, Y.2    McTeague, M.3    Vu, A.W.4    Wexler, H.5    Finegold, S.M.6
  • 23
    • 33645037113 scopus 로고    scopus 로고
    • Thauera and Azoarcus as functionally important generaina denitrifying quinoline-removal bioreactoras revealed by microbial community structure comparison
    • Liu, B., Zhang, F., Feng, X., Liu, Y., Yan, X., Zhang, X., Wang, L. and Zhao, L. (2005) Thauera and Azoarcus as functionally important generaina denitrifying quinoline-removal bioreactoras revealed by microbial community structure comparison. FEMS Microbiol Ecol 55, 274-286.
    • (2005) FEMS Microbiol Ecol , vol.55 , pp. 274-286
    • Liu, B.1    Zhang, F.2    Feng, X.3    Liu, Y.4    Yan, X.5    Zhang, X.6    Wang, L.7    Zhao, L.8
  • 24
    • 79956030046 scopus 로고    scopus 로고
    • The intestinal microbial diversity in Chinese shrimp (Fenneropenaeus chinensis) as determined by PCR-DGGE and clone library analyses
    • Liu, H., Wang, L., Liu, M., Wang, B., Jiang, K., Ma, S. and Li, Q. (2011) The intestinal microbial diversity in Chinese shrimp (Fenneropenaeus chinensis) as determined by PCR-DGGE and clone library analyses. Aquaculture 317, 32-36.
    • (2011) Aquaculture , vol.317 , pp. 32-36
    • Liu, H.1    Wang, L.2    Liu, M.3    Wang, B.4    Jiang, K.5    Ma, S.6    Li, Q.7
  • 25
    • 0000626742 scopus 로고    scopus 로고
    • Bacteria in the gastrointestinal tract of birds
    • ed. Mackie, R.I., White, B.A. and Isaacson, R.E. London: Chapman & Hall.
    • Mead, G.C. (1997) Bacteria in the gastrointestinal tract of birds. In Gastrointestinal Microbiology, Vol. 2. ed. Mackie, R.I., White, B.A. and Isaacson, R.E. pp. 216-240. London: Chapman & Hall.
    • (1997) Gastrointestinal Microbiology , vol.2 , pp. 216-240
    • Mead, G.C.1
  • 26
    • 33644944519 scopus 로고    scopus 로고
    • A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities
    • Oros-Sichler, M., Gomes, N.C., Neuber, G. and Smalla, K. (2006) A new semi-nested PCR protocol to amplify large 18S rRNA gene fragments for PCR-DGGE analysis of soil fungal communities. J Microbiol Methods 65, 63-75.
    • (2006) J Microbiol Methods , vol.65 , pp. 63-75
    • Oros-Sichler, M.1    Gomes, N.C.2    Neuber, G.3    Smalla, K.4
  • 27
    • 0030805150 scopus 로고    scopus 로고
    • Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Ovreás, L., Forney, L., Daae, F.L. and Torsvik, V. (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63, 3367-3373.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3367-3373
    • Ovreás, L.1    Forney, L.2    Daae, F.L.3    Torsvik, V.4
  • 28
    • 0034610540 scopus 로고    scopus 로고
    • Immunity enhancement in black tiger shrimp (Penaeus monodon) by a probiont bacterium (Bacillus S11)
    • Rengpipat, S., Rukpratanporn, S., Piyatiratitivorakul, S. and Menasaveta, P. (2000) Immunity enhancement in black tiger shrimp (Penaeus monodon) by a probiont bacterium (Bacillus S11). Aquaculture 191, 271-288.
    • (2000) Aquaculture , vol.191 , pp. 271-288
    • Rengpipat, S.1    Rukpratanporn, S.2    Piyatiratitivorakul, S.3    Menasaveta, P.4
  • 29
    • 0028894678 scopus 로고
    • Intestinal microflora of salmonids. A review
    • Ringø, E., Strøm, E. and Tabachek, J.A. (1995) Intestinal microflora of salmonids. A review. Aquac Res 26, 773-789.
    • (1995) Aquac Res , vol.26 , pp. 773-789
    • Ringø, E.1    Strøm, E.2    Tabachek, J.A.3
  • 30
    • 33745835454 scopus 로고    scopus 로고
    • Cyanobacterial lipopolysaccharides and human health - a review
    • Stewart, I., Schluter, P.J. and Shaw, G.R. (2006) Cyanobacterial lipopolysaccharides and human health - a review. Environ Health 5, 7.
    • (2006) Environ Health , vol.5 , pp. 7
    • Stewart, I.1    Schluter, P.J.2    Shaw, G.R.3
  • 31
    • 7044223046 scopus 로고    scopus 로고
    • Biodiversity and in situ abundance of gut microflora of abalone (Haliotis discus hannai) determined by culture-independent techniques
    • Tanaka, R., Ootsubo, M., Sawabe, T., Ezura, Y. and Tajima, K. (2004) Biodiversity and in situ abundance of gut microflora of abalone (Haliotis discus hannai) determined by culture-independent techniques. Aquaculture 241, 453-463.
    • (2004) Aquaculture , vol.241 , pp. 453-463
    • Tanaka, R.1    Ootsubo, M.2    Sawabe, T.3    Ezura, Y.4    Tajima, K.5
  • 32
    • 0026735730 scopus 로고
    • Characteristics of a new cellulolytic Clostridium sp. isolated from pig intestinal tract
    • Varel, V.H. and Pond, W.G. (1992) Characteristics of a new cellulolytic Clostridium sp. isolated from pig intestinal tract. Appl Environ Microbiol 58, 1645-1649.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1645-1649
    • Varel, V.H.1    Pond, W.G.2
  • 33
    • 0037241844 scopus 로고    scopus 로고
    • Control of pathogenic Vibrio spp. by Bacillus subtilis BT23, a possible probiotic treatment for black tiger shrimp Penaeus monodon
    • Vaseeharan, B. and Ramasamy, P. (2003) Control of pathogenic Vibrio spp. by Bacillus subtilis BT23, a possible probiotic treatment for black tiger shrimp Penaeus monodon. Lett Appl Microbiol 36, 83-87.
    • (2003) Lett Appl Microbiol , vol.36 , pp. 83-87
    • Vaseeharan, B.1    Ramasamy, P.2
  • 34
    • 21744457421 scopus 로고    scopus 로고
    • Phylogenetic diversity of archaea in deep-sea sediments of west pacific warm pool
    • Wang, P., Xiao, X. and Wang, F. (2005) Phylogenetic diversity of archaea in deep-sea sediments of west pacific warm pool. Extremophiles 9, 209-217.
    • (2005) Extremophiles , vol.9 , pp. 209-217
    • Wang, P.1    Xiao, X.2    Wang, F.3
  • 35
    • 34447336929 scopus 로고    scopus 로고
    • Effect of probiotics on growth performance and digestive enzyme activity of the shrimp Penaeus vannamei
    • Wang, Y. (2007) Effect of probiotics on growth performance and digestive enzyme activity of the shrimp Penaeus vannamei. Aquaculture 269, 259-264.
    • (2007) Aquaculture , vol.269 , pp. 259-264
    • Wang, Y.1
  • 36
    • 77950664569 scopus 로고    scopus 로고
    • The characterization and diversity of bacterial endophytes of grapevine
    • West, E.R., Cother, E.J., Steel, C.C. and Ash, G.J. (2010) The characterization and diversity of bacterial endophytes of grapevine. Can J Microbiol 56, 209-216.
    • (2010) Can J Microbiol , vol.56 , pp. 209-216
    • West, E.R.1    Cother, E.J.2    Steel, C.C.3    Ash, G.J.4
  • 37
    • 84861483790 scopus 로고    scopus 로고
    • Isolation and identification of two bacterial pathogens from mixed infection mud crab Scylla serrata and drug therapy
    • Chinese with English abstract).
    • Xia, X., Wu, Q., Li, Y., Wang, S., You, C. and Lin, Y. (2010) Isolation and identification of two bacterial pathogens from mixed infection mud crab Scylla serrata and drug therapy. J Trop Oceanogr 29, 103-110. (in Chinese with English abstract).
    • (2010) J Trop Oceanogr , vol.29 , pp. 103-110
    • Xia, X.1    Wu, Q.2    Li, Y.3    Wang, S.4    You, C.5    Lin, Y.6


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