-
1
-
-
0037174670
-
Network motifs: simple building blocks of complex networks
-
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, et al. (2002) Network motifs: simple building blocks of complex networks. Science (New York, NY) 298: 824-827.
-
(2002)
Science (New York, NY)
, vol.298
, pp. 824-827
-
-
Milo, R.1
Shen-Orr, S.2
Itzkovitz, S.3
Kashtan, N.4
Chklovskii, D.5
-
3
-
-
0034212551
-
Engineering stability in gene networks by autoregulation
-
Becskei A, Serrano L, (2000) Engineering stability in gene networks by autoregulation. Nature 405: 590-593.
-
(2000)
Nature
, vol.405
, pp. 590-593
-
-
Becskei, A.1
Serrano, L.2
-
5
-
-
0036428761
-
Negative Autoregulation Speeds the Response Times of Transcription Networks
-
Rosenfeld N, Elowitz MB, Alon U, (2002) Negative Autoregulation Speeds the Response Times of Transcription Networks. Journal of Molecular Biology 323: 785-793.
-
(2002)
Journal of Molecular Biology
, vol.323
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.B.2
Alon, U.3
-
6
-
-
40649083597
-
Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression
-
Stekel DJ, Jenkins DJ, (2008) Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression. BMC systems biology 2: 6.
-
(2008)
BMC Systems Biology
, vol.2
, pp. 6
-
-
Stekel, D.J.1
Jenkins, D.J.2
-
7
-
-
79953757806
-
Optimal parameter settings for information processing in gene regulatory networks
-
Chu DF, Zabet NR, Hone ANW (n.d.) Optimal parameter settings for information processing in gene regulatory networks. Bio Systems 104: 99-108.
-
Bio Systems
, vol.104
, pp. 99-108
-
-
Chu, D.F.1
Zabet, N.R.2
Hone, A.N.W.3
-
8
-
-
79959980480
-
Negative feedback and physical limits of genes
-
Zabet RN, (2011) Negative feedback and physical limits of genes. Journal of theoretical biology 284: 82-91.
-
(2011)
Journal of Theoretical Biology
, vol.284
, pp. 82-91
-
-
Zabet, R.N.1
-
9
-
-
78049239445
-
A synthetic-natural hybrid oscillator in human cells
-
Toettcher JE, Mock C, Batchelor E, Loewer A, Lahav G, (2010) A synthetic-natural hybrid oscillator in human cells. Proceedings of the National Academy of Sciences of the United States of America 107: 17047-17052.
-
(2010)
Proceedings of the National Academy of Sciences of the United States of America
, vol.107
, pp. 17047-17052
-
-
Toettcher, J.E.1
Mock, C.2
Batchelor, E.3
Loewer, A.4
Lahav, G.5
-
10
-
-
0023506940
-
Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation
-
Thomas CM, Smith C a, (1987) Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annual review of microbiology 41: 77-101.
-
(1987)
Annual Review of Microbiology
, vol.41
, pp. 77-101
-
-
Thomas, C.M.1
Smith, C.2
-
11
-
-
84974450405
-
R-Factors used for genetic studies in strains of Pseudomonas aeruginosa and their origin
-
Holloway BW, Richmond MH, (1973) R-Factors used for genetic studies in strains of Pseudomonas aeruginosa and their origin. Genetical Research 21: 103-105.
-
(1973)
Genetical Research
, vol.21
, pp. 103-105
-
-
Holloway, B.W.1
Richmond, M.H.2
-
12
-
-
34249872978
-
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups
-
Bahl MI, Hansen LH, Goesmann A, Sørensen SJ, (2007) The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. Plasmid 58: 31-43.
-
(2007)
Plasmid
, vol.58
, pp. 31-43
-
-
Bahl, M.I.1
Hansen, L.H.2
Goesmann, A.3
Sørensen, S.J.4
-
13
-
-
55549141868
-
Diversity of IncP-9 plasmids of Pseudomonas
-
Sevastsyanovich YR, Krasowiak R, Bingle LEH, Haines AS, Sokolov SL, et al. (2008) Diversity of IncP-9 plasmids of Pseudomonas. Microbiology (Reading, England) 154: 2929-2941.
-
(2008)
Microbiology (Reading, England)
, vol.154
, pp. 2929-2941
-
-
Sevastsyanovich, Y.R.1
Krasowiak, R.2
Bingle, L.E.H.3
Haines, A.S.4
Sokolov, S.L.5
-
14
-
-
0028302354
-
Complete nucleotide sequence of Birmingham IncP alpha plasmids
-
Pansegrau W, Lanka E, Barth PT, Figurski DH, Guiney DG, et al. (1994) Complete nucleotide sequence of Birmingham IncP alpha plasmids. Journal of Molecular Biology 239: 623-663.
-
(1994)
Journal of Molecular Biology
, vol.239
, pp. 623-663
-
-
Pansegrau, W.1
Lanka, E.2
Barth, P.T.3
Figurski, D.H.4
Guiney, D.G.5
-
15
-
-
0037036118
-
DNA recognition by the KorA proteins of IncP-1 plasmids RK2 and R751
-
Kostelidou K, Thomas CM, (2002) DNA recognition by the KorA proteins of IncP-1 plasmids RK2 and R751. Biochimica et biophysica acta 1576: 110-118.
-
(2002)
Biochimica Et Biophysica Acta
, vol.1576
, pp. 110-118
-
-
Kostelidou, K.1
Thomas, C.M.2
-
16
-
-
0033522906
-
Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB
-
Kostelidou K, Jones a C, Thomas CM, (1999) Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB. Journal of molecular biology 289: 211-221.
-
(1999)
Journal of Molecular Biology
, vol.289
, pp. 211-221
-
-
Kostelidou, K.1
Jones, C.2
Thomas, C.M.3
-
17
-
-
0022381366
-
Induction of surface exclusion (entry exclusion) by Streptococcus faecalis sex pheromones: use of monoclonal antibodies to identify an inducible surface antigen involved in the exclusion process
-
Dunny GM, Zimmerman DL, Tortorello ML, (1985) Induction of surface exclusion (entry exclusion) by Streptococcus faecalis sex pheromones: use of monoclonal antibodies to identify an inducible surface antigen involved in the exclusion process. Proceedings of the National Academy of Sciences of the United States of America 82: 8582-8586.
-
(1985)
Proceedings of the National Academy of Sciences of the United States of America
, vol.82
, pp. 8582-8586
-
-
Dunny, G.M.1
Zimmerman, D.L.2
Tortorello, M.L.3
-
18
-
-
79960886799
-
Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration
-
Herman D, Thomas CM, Stekel DJ, (2011) Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration. BMC systems biology 5: 119.
-
(2011)
BMC Systems Biology
, vol.5
, pp. 119
-
-
Herman, D.1
Thomas, C.M.2
Stekel, D.J.3
-
19
-
-
0028844048
-
Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operators
-
Jagura-Burdzy G, Thomas CM, (1995) Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operators. Journal of molecular biology 253: 39-50.
-
(1995)
Journal of Molecular Biology
, vol.253
, pp. 39-50
-
-
Jagura-Burdzy, G.1
Thomas, C.M.2
-
20
-
-
41549112784
-
Distribution of the partitioning protein KorB on the genome of IncP-1 plasmid RK2
-
Chiu C-M, Manzoor SE, Batt SM, Muntaha ST, Bingle LEH, et al. (2008) Distribution of the partitioning protein KorB on the genome of IncP-1 plasmid RK2. Plasmid 59: 163-175.
-
(2008)
Plasmid
, vol.59
, pp. 163-175
-
-
Chiu, C.-M.1
Manzoor, S.E.2
Batt, S.M.3
Muntaha, S.T.4
Bingle, L.E.H.5
-
21
-
-
0032956390
-
Repression at a distance by the global regulator KorB of promiscuous IncP plasmids
-
Jagura-Burdzy G, Macartney DP, Zatyka M, Cunliffe L, Cooke D, et al. (1999) Repression at a distance by the global regulator KorB of promiscuous IncP plasmids. Molecular microbiology 32: 519-532.
-
(1999)
Molecular Microbiology
, vol.32
, pp. 519-532
-
-
Jagura-Burdzy, G.1
Macartney, D.P.2
Zatyka, M.3
Cunliffe, L.4
Cooke, D.5
-
22
-
-
56749092077
-
A single aromatic residue in transcriptional repressor protein KorA is critical for cooperativity with its co-regulator KorB
-
Bingle LEH, Rajasekar KV, Muntaha ST, Nadella V, Hyde EI, et al. (2008) A single aromatic residue in transcriptional repressor protein KorA is critical for cooperativity with its co-regulator KorB. Molecular microbiology 70: 1502-1514.
-
(2008)
Molecular Microbiology
, vol.70
, pp. 1502-1514
-
-
Bingle, L.E.H.1
Rajasekar, K.V.2
Muntaha, S.T.3
Nadella, V.4
Hyde, E.I.5
-
24
-
-
84866786886
-
Evolution of resource and energy management in biologically realistic gene regulatory network models
-
Stekel DJ, Jenkins DJ, (2012) Evolution of resource and energy management in biologically realistic gene regulatory network models. Advances in experimental medicine and biology 751: 301-328.
-
(2012)
Advances in Experimental Medicine and Biology
, vol.751
, pp. 301-328
-
-
Stekel, D.J.1
Jenkins, D.J.2
-
25
-
-
67650146522
-
A new model for investigating the evolution of transcription control networks
-
Jenkins DJ, Stekel DJ, (2009) A new model for investigating the evolution of transcription control networks. Artificial life 15: 259-291.
-
(2009)
Artificial Life
, vol.15
, pp. 259-291
-
-
Jenkins, D.J.1
Stekel, D.J.2
-
26
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N, Xie XS, (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
27
-
-
65249099497
-
Fundamental Aspects of Protein-Protein Association Kinetics
-
Schreiber G, Haran G, Zhou H-X, (2009) Fundamental Aspects of Protein-Protein Association Kinetics. Chemical Reviews 109: 839-860.
-
(2009)
Chemical Reviews
, vol.109
, pp. 839-860
-
-
Schreiber, G.1
Haran, G.2
Zhou, H.-X.3
-
28
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
Halford SE, Marko JF, (2004) How do site-specific DNA-binding proteins find their targets? Nucleic acids research 32: 3040-3052.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
29
-
-
0001144902
-
Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
-
Gibson M a, Bruck J, (2000) Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels. The Journal of Physical Chemistry A 104: 1876-1889.
-
(2000)
The Journal of Physical Chemistry A
, vol.104
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
30
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
Gillespie DT, (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 22: 403-434.
-
(1976)
Journal of Computational Physics
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
31
-
-
77954143376
-
Sensitivity summation theorems for stochastic biochemical reaction systems
-
Kim KH, Sauro HM, (2010) Sensitivity summation theorems for stochastic biochemical reaction systems. Mathematical biosciences 226: 109-119.
-
(2010)
Mathematical Biosciences
, vol.226
, pp. 109-119
-
-
Kim, K.H.1
Sauro, H.M.2
|