메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages

Adaptation for Protein Synthesis Efficiency in a Naturally Occurring Self-Regulating Operon

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ARTICLE; AUTOREGULATION; BINDING AFFINITY; CELL DIVISION; CELL GROWTH; CONTROLLED STUDY; DIMERIZATION; GENE CONTROL; GENE REPLICATION; HOST CELL; MATHEMATICAL COMPUTING; OPERON; PLASMID; POPULATION DYNAMICS; PROTEIN MOTIF; PROTEIN SYNTHESIS; RNA DEGRADATION; RNA TRANSLATION; STOCHASTIC MODEL;

EID: 84869771521     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049678     Document Type: Article
Times cited : (2)

References (31)
  • 3
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation
    • Becskei A, Serrano L, (2000) Engineering stability in gene networks by autoregulation. Nature 405: 590-593.
    • (2000) Nature , vol.405 , pp. 590-593
    • Becskei, A.1    Serrano, L.2
  • 5
    • 0036428761 scopus 로고    scopus 로고
    • Negative Autoregulation Speeds the Response Times of Transcription Networks
    • Rosenfeld N, Elowitz MB, Alon U, (2002) Negative Autoregulation Speeds the Response Times of Transcription Networks. Journal of Molecular Biology 323: 785-793.
    • (2002) Journal of Molecular Biology , vol.323 , pp. 785-793
    • Rosenfeld, N.1    Elowitz, M.B.2    Alon, U.3
  • 6
    • 40649083597 scopus 로고    scopus 로고
    • Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression
    • Stekel DJ, Jenkins DJ, (2008) Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression. BMC systems biology 2: 6.
    • (2008) BMC Systems Biology , vol.2 , pp. 6
    • Stekel, D.J.1    Jenkins, D.J.2
  • 7
    • 79953757806 scopus 로고    scopus 로고
    • Optimal parameter settings for information processing in gene regulatory networks
    • Chu DF, Zabet NR, Hone ANW (n.d.) Optimal parameter settings for information processing in gene regulatory networks. Bio Systems 104: 99-108.
    • Bio Systems , vol.104 , pp. 99-108
    • Chu, D.F.1    Zabet, N.R.2    Hone, A.N.W.3
  • 8
    • 79959980480 scopus 로고    scopus 로고
    • Negative feedback and physical limits of genes
    • Zabet RN, (2011) Negative feedback and physical limits of genes. Journal of theoretical biology 284: 82-91.
    • (2011) Journal of Theoretical Biology , vol.284 , pp. 82-91
    • Zabet, R.N.1
  • 10
    • 0023506940 scopus 로고
    • Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation
    • Thomas CM, Smith C a, (1987) Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulation. Annual review of microbiology 41: 77-101.
    • (1987) Annual Review of Microbiology , vol.41 , pp. 77-101
    • Thomas, C.M.1    Smith, C.2
  • 11
    • 84974450405 scopus 로고
    • R-Factors used for genetic studies in strains of Pseudomonas aeruginosa and their origin
    • Holloway BW, Richmond MH, (1973) R-Factors used for genetic studies in strains of Pseudomonas aeruginosa and their origin. Genetical Research 21: 103-105.
    • (1973) Genetical Research , vol.21 , pp. 103-105
    • Holloway, B.W.1    Richmond, M.H.2
  • 12
    • 34249872978 scopus 로고    scopus 로고
    • The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups
    • Bahl MI, Hansen LH, Goesmann A, Sørensen SJ, (2007) The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established alpha, beta and delta sub-groups. Plasmid 58: 31-43.
    • (2007) Plasmid , vol.58 , pp. 31-43
    • Bahl, M.I.1    Hansen, L.H.2    Goesmann, A.3    Sørensen, S.J.4
  • 15
    • 0037036118 scopus 로고    scopus 로고
    • DNA recognition by the KorA proteins of IncP-1 plasmids RK2 and R751
    • Kostelidou K, Thomas CM, (2002) DNA recognition by the KorA proteins of IncP-1 plasmids RK2 and R751. Biochimica et biophysica acta 1576: 110-118.
    • (2002) Biochimica Et Biophysica Acta , vol.1576 , pp. 110-118
    • Kostelidou, K.1    Thomas, C.M.2
  • 16
    • 0033522906 scopus 로고    scopus 로고
    • Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB
    • Kostelidou K, Jones a C, Thomas CM, (1999) Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB. Journal of molecular biology 289: 211-221.
    • (1999) Journal of Molecular Biology , vol.289 , pp. 211-221
    • Kostelidou, K.1    Jones, C.2    Thomas, C.M.3
  • 17
    • 0022381366 scopus 로고
    • Induction of surface exclusion (entry exclusion) by Streptococcus faecalis sex pheromones: use of monoclonal antibodies to identify an inducible surface antigen involved in the exclusion process
    • Dunny GM, Zimmerman DL, Tortorello ML, (1985) Induction of surface exclusion (entry exclusion) by Streptococcus faecalis sex pheromones: use of monoclonal antibodies to identify an inducible surface antigen involved in the exclusion process. Proceedings of the National Academy of Sciences of the United States of America 82: 8582-8586.
    • (1985) Proceedings of the National Academy of Sciences of the United States of America , vol.82 , pp. 8582-8586
    • Dunny, G.M.1    Zimmerman, D.L.2    Tortorello, M.L.3
  • 18
    • 79960886799 scopus 로고    scopus 로고
    • Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration
    • Herman D, Thomas CM, Stekel DJ, (2011) Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration. BMC systems biology 5: 119.
    • (2011) BMC Systems Biology , vol.5 , pp. 119
    • Herman, D.1    Thomas, C.M.2    Stekel, D.J.3
  • 19
    • 0028844048 scopus 로고
    • Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operators
    • Jagura-Burdzy G, Thomas CM, (1995) Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operators. Journal of molecular biology 253: 39-50.
    • (1995) Journal of Molecular Biology , vol.253 , pp. 39-50
    • Jagura-Burdzy, G.1    Thomas, C.M.2
  • 20
    • 41549112784 scopus 로고    scopus 로고
    • Distribution of the partitioning protein KorB on the genome of IncP-1 plasmid RK2
    • Chiu C-M, Manzoor SE, Batt SM, Muntaha ST, Bingle LEH, et al. (2008) Distribution of the partitioning protein KorB on the genome of IncP-1 plasmid RK2. Plasmid 59: 163-175.
    • (2008) Plasmid , vol.59 , pp. 163-175
    • Chiu, C.-M.1    Manzoor, S.E.2    Batt, S.M.3    Muntaha, S.T.4    Bingle, L.E.H.5
  • 22
    • 56749092077 scopus 로고    scopus 로고
    • A single aromatic residue in transcriptional repressor protein KorA is critical for cooperativity with its co-regulator KorB
    • Bingle LEH, Rajasekar KV, Muntaha ST, Nadella V, Hyde EI, et al. (2008) A single aromatic residue in transcriptional repressor protein KorA is critical for cooperativity with its co-regulator KorB. Molecular microbiology 70: 1502-1514.
    • (2008) Molecular Microbiology , vol.70 , pp. 1502-1514
    • Bingle, L.E.H.1    Rajasekar, K.V.2    Muntaha, S.T.3    Nadella, V.4    Hyde, E.I.5
  • 24
    • 84866786886 scopus 로고    scopus 로고
    • Evolution of resource and energy management in biologically realistic gene regulatory network models
    • Stekel DJ, Jenkins DJ, (2012) Evolution of resource and energy management in biologically realistic gene regulatory network models. Advances in experimental medicine and biology 751: 301-328.
    • (2012) Advances in Experimental Medicine and Biology , vol.751 , pp. 301-328
    • Stekel, D.J.1    Jenkins, D.J.2
  • 25
    • 67650146522 scopus 로고    scopus 로고
    • A new model for investigating the evolution of transcription control networks
    • Jenkins DJ, Stekel DJ, (2009) A new model for investigating the evolution of transcription control networks. Artificial life 15: 259-291.
    • (2009) Artificial Life , vol.15 , pp. 259-291
    • Jenkins, D.J.1    Stekel, D.J.2
  • 26
    • 33645027986 scopus 로고    scopus 로고
    • Stochastic protein expression in individual cells at the single molecule level
    • Cai L, Friedman N, Xie XS, (2006) Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
    • (2006) Nature , vol.440 , pp. 358-362
    • Cai, L.1    Friedman, N.2    Xie, X.S.3
  • 27
    • 65249099497 scopus 로고    scopus 로고
    • Fundamental Aspects of Protein-Protein Association Kinetics
    • Schreiber G, Haran G, Zhou H-X, (2009) Fundamental Aspects of Protein-Protein Association Kinetics. Chemical Reviews 109: 839-860.
    • (2009) Chemical Reviews , vol.109 , pp. 839-860
    • Schreiber, G.1    Haran, G.2    Zhou, H.-X.3
  • 28
    • 3042579602 scopus 로고    scopus 로고
    • How do site-specific DNA-binding proteins find their targets?
    • Halford SE, Marko JF, (2004) How do site-specific DNA-binding proteins find their targets? Nucleic acids research 32: 3040-3052.
    • (2004) Nucleic Acids Research , vol.32 , pp. 3040-3052
    • Halford, S.E.1    Marko, J.F.2
  • 29
    • 0001144902 scopus 로고    scopus 로고
    • Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
    • Gibson M a, Bruck J, (2000) Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels. The Journal of Physical Chemistry A 104: 1876-1889.
    • (2000) The Journal of Physical Chemistry A , vol.104 , pp. 1876-1889
    • Gibson, M.1    Bruck, J.2
  • 30
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie DT, (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 22: 403-434.
    • (1976) Journal of Computational Physics , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 31
    • 77954143376 scopus 로고    scopus 로고
    • Sensitivity summation theorems for stochastic biochemical reaction systems
    • Kim KH, Sauro HM, (2010) Sensitivity summation theorems for stochastic biochemical reaction systems. Mathematical biosciences 226: 109-119.
    • (2010) Mathematical Biosciences , vol.226 , pp. 109-119
    • Kim, K.H.1    Sauro, H.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.