-
2
-
-
0019423856
-
Sequence and organization of the human mitochondrial genome
-
DOI 10.1038/290457a0
-
Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature 290: 457-465. (Pubitemid 11159074)
-
(1981)
Nature
, vol.290
, Issue.5806
, pp. 457-465
-
-
Anderson, S.1
Bankier, A.T.2
Barrell, B.G.3
-
3
-
-
0032428969
-
The essential Gcd10p-Gcd14p nuclear complex 15 required for 1- methyladenosine modification and maturation of initiator methionyl-tRNA
-
Anderson J, Phan L, Cuesta R, Carlson BA, Pak M, Asano K, Bjork GR, Tamame M, Hinnebusch AG. 1998. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev 12: 3650-3662. (Pubitemid 29019646)
-
(1998)
Genes and Development
, vol.12
, Issue.23
, pp. 3650-3662
-
-
Anderson, J.1
Phan, L.2
Cuesta, R.3
Carlson, B.A.4
Pak, M.5
Asano, K.6
Bjork, G.R.7
Tamame, M.8
Hinnebusch, A.G.9
-
5
-
-
0025815046
-
The 3 A crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination
-
Basavappa R, Sigler PB. 1991. The 3 Å crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination. EMBO J 10: 3105-3111. (Pubitemid 21905332)
-
(1991)
EMBO Journal
, vol.10
, Issue.10
, pp. 3105-3111
-
-
Basavappa, R.1
Sigler, P.B.2
-
6
-
-
0035955465
-
In silico analysis of the tRNA:m1A58 methyltransferase family: Homology-based fold prediction and identification of new members from Eubacteria and Archaea
-
DOI 10.1016/S0014-5793(01)02962-3, PII S0014579301029623
-
Bujnicki JM. 2001. In silico analysis of the tRNA:m1A58 methyltransferase family: Homology-based fold prediction and identification of new members from Eubacteria and Archaea. FEBS Lett 507: 123-127. (Pubitemid 33001527)
-
(2001)
FEBS Letters
, vol.507
, Issue.2
, pp. 123-127
-
-
Bujnicki, J.M.1
-
8
-
-
84869822219
-
LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria
-
Chujo T, Ohira T, Sakaguchi Y, Goshima N, Nomura N, Nagao A, Suzuki T. 2012. LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria. Nucleic Acids Res 40: 8033-8047.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 8033-8047
-
-
Chujo, T.1
Ohira, T.2
Sakaguchi, Y.3
Goshima, N.4
Nomura, N.5
Nagao, A.6
Suzuki, T.7
-
9
-
-
0029915525
-
Computational method to predict mitochondrially imported proteins and their targeting sequences
-
Claros MG, Vincens P. 1996. Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur J Biochem 241: 779-786. (Pubitemid 26379380)
-
(1996)
European Journal of Biochemistry
, vol.241
, Issue.3
, pp. 779-786
-
-
Claros, M.G.1
Vincens, P.2
-
10
-
-
58149191269
-
MODOMICS: A database of RNA modification pathways. 2008 Update
-
Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K. 2009. MODOMICS: A database of RNA modification pathways. 2008 update. Nucleic Acids Res 37: D118-D121.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Czerwoniec, A.1
Dunin-Horkawicz, S.2
Purta, E.3
Kaminska, K.H.4
Kasprzak, J.M.5
Bujnicki, J.M.6
Grosjean, H.7
Rother, K.8
-
11
-
-
0037799504
-
1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures
-
1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures. Nucleic Acids Res 31: 2148-2156.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2148-2156
-
-
Droogmans, L.1
Roovers, M.2
Bujnicki, J.M.3
Tricot, C.4
Hartsch, T.5
Stalon, V.6
Grosjean, H.7
-
12
-
-
0018716671
-
A detailed model of reverse transcription and tests of crucial aspects
-
Gilboa E, Mitra SW, Goff S, Baltimore D. 1979. A detailed model of reverse transcription and tests of crucial aspects. Cell 18: 93-100. (Pubitemid 10228240)
-
(1979)
Cell
, vol.18
, Issue.1
, pp. 93-100
-
-
Gilboa, E.1
Mitra, S.W.2
Goff, S.3
Baltimore, D.4
-
13
-
-
57049126143
-
Human protein factory for converting the transcriptome into an in vitro-expressed proteome
-
Goshima N, Kawamura Y, Fukumoto A, Miura A, Honma R, Satoh R, Wakamatsu A, Yamamoto J, Kimura K, Nishikawa T, et al. 2008. Human protein factory for converting the transcriptome into an in vitro-expressed proteome. Nat Methods 5: 1011-1017.
-
(2008)
Nat Methods
, vol.5
, pp. 1011-1017
-
-
Goshima, N.1
Kawamura, Y.2
Fukumoto, A.3
Miura, A.4
Honma, R.5
Satoh, R.6
Wakamatsu, A.7
Yamamoto, J.8
Kimura, K.9
Nishikawa, T.10
-
14
-
-
0035860329
-
Crystal structure of Rv2118c: An AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv
-
DOI 10.1006/jmbi.2001.4935
-
Gupta A, Kumar PH, Dineshkumar TK, Varshney U, Subramanya HS. 2001. Crystal structure of Rv2118c: An AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv. J Mol Biol 312: 381-391. (Pubitemid 32928133)
-
(2001)
Journal of Molecular Biology
, vol.312
, Issue.2
, pp. 381-391
-
-
Gupta, A.1
Kumar, P.H.2
Dineshkumar, T.K.3
Varshney, U.4
Subramanya, H.S.5
-
15
-
-
0032052242
-
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
-
DOI 10.1093/nar/26.7.1636
-
Helm M, Brule H, Degoul F, Cepanec C, Leroux JP, Giege R, Florentz C. 1998. The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res 26: 1636-1643. (Pubitemid 28291797)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.7
, pp. 1636-1643
-
-
Helm, M.1
Brule, H.2
Degoul, F.3
Cepanec, C.4
Leroux, J.-P.5
Giege, R.6
Florentz, C.7
-
16
-
-
0032867610
-
1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys
-
1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. Biochemistry 38: 13338-13346.
-
(1999)
Biochemistry
, vol.38
, pp. 13338-13346
-
-
Helm, M.1
Giege, R.2
Florentz, C.3
-
17
-
-
34547560275
-
WoLF PSORT: Protein localization predictor
-
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ, Nakai K. 2007. WoLF PSORT: Protein localization predictor. Nucleic Acids Res 35: W585-W587.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
18
-
-
58149191272
-
TRNAdb 2009: Compilation of tRNA sequences and tRNA genes
-
Juhling F, Morl M, Hartmann RK, Sprinzl M, Stadler PF, Putz J. 2009. tRNAdb 2009: Compilation of tRNA sequences and tRNA genes. Nucleic Acids Res 37: D159-D162.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Juhling, F.1
Morl, M.2
Hartmann, R.K.3
Sprinzl, M.4
Stadler, P.F.5
Putz, J.6
-
19
-
-
2642574393
-
Met in S. cerevisiae
-
DOI 10.1101/gad.1183804
-
Kadaba S, Krueger A, Trice T, Krecic AM, Hinnebusch AG, Anderson J. 2004. Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae. Genes Dev 18: 1227-1240. (Pubitemid 38720591)
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1227-1240
-
-
Kadaba, S.1
Krueger, A.2
Trice, T.3
Krecic, A.M.4
Hinnebusch, A.G.5
Anderson, J.6
-
20
-
-
34047177954
-
Specific residues at every third position of siRNA shape its efficient RNAi activity
-
doi: 10.1093/nar/gkl1120
-
Katoh T, Suzuki T. 2007. Specific residues at every third position of siRNA shape its efficient RNAi activity. Nucleic Acids Res 35: e27. doi: 10.1093/nar/gkl1120.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Katoh, T.1
Suzuki, T.2
-
21
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
-
Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, Baba T, Suzuki T. 2009. Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23: 433-438.
-
(2009)
Genes Dev
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
Baba, T.6
Suzuki, T.7
-
22
-
-
0026573082
-
Leu(UUR) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes
-
Leu(UUR) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes. Mol Cell Biol 12: 480-490.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 480-490
-
-
King, M.P.1
Koga, Y.2
Davidson, M.3
Schon, E.A.4
-
23
-
-
18844430007
-
Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease
-
DOI 10.1073/pnas.0500563102
-
Kirino Y, Goto Y, Campos Y, Arenas J, Suzuki T. 2005. Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease. Proc Natl Acad Sci 102: 7127-7132. (Pubitemid 40696345)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.20
, pp. 7127-7132
-
-
Kirino, Y.1
Goto, Y.-I.2
Campos, Y.3
Arenas, J.4
Suzuki, T.5
-
24
-
-
0035941287
-
The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present
-
Koc EC, Burkhart W, Blackburn K, Moyer MB, Schlatzer DM, Moseley A, Spremulli LL. 2001. The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. J Biol Chem 276: 43958-43969.
-
(2001)
J Biol Chem
, vol.276
, pp. 43958-43969
-
-
Koc, E.C.1
Burkhart, W.2
Blackburn, K.3
Moyer, M.B.4
Schlatzer, D.M.5
Moseley, A.6
Spremulli, L.L.7
-
25
-
-
27844530636
-
Natural history of S-adenosylmethionine- binding proteins
-
doi: 10.1186/ 1472-6807-5-19
-
Kozbial PZ, Mushegian AR. 2005. Natural history of S-adenosylmethionine- binding proteins. BMC Struct Biol 5: 19. doi: 10.1186/ 1472-6807-5-19.
-
(2005)
BMC Struct Biol
, vol.5
, pp. 19
-
-
Kozbial, P.Z.1
Mushegian, A.R.2
-
30
-
-
0016354122
-
Structure of yeast phenylalanine tRNA at 3 Å resolution
-
Robertus JD, Ladner JE, Finch JT, Rhodes D, Brown RS, Clark BF, Klug A. 1974. Structure of yeast phenylalanine tRNA at 3 Å resolution. Nature 250: 546-551.
-
(1974)
Nature
, vol.250
, pp. 546-551
-
-
Robertus, J.D.1
Ladner, J.E.2
Finch, J.T.3
Rhodes, D.4
Brown, R.S.5
Clark, B.F.6
Klug, A.7
-
32
-
-
77953643795
-
Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs
-
Saikia M, Fu Y, Pavon-Eternod M, He C, Pan T. 2010. Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs. RNA 16: 1317-1327.
-
(2010)
RNA
, vol.16
, pp. 1317-1327
-
-
Saikia, M.1
Fu, Y.2
Pavon-Eternod, M.3
He, C.4
Pan, T.5
-
33
-
-
15044362242
-
Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm
-
DOI 10.1093/nar/gki309
-
Sakurai M, Ohtsuki T, Watanabe K. 2005. Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm. Nucleic Acids Res 33: 1653-1661. (Pubitemid 41418393)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.5
, pp. 1653-1661
-
-
Sakurai, M.1
Ohtsuki, T.2
Watanabe, K.3
-
34
-
-
33744946077
-
Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures
-
DOI 10.1074/jbc.M511675200
-
Shigi N, Sakaguchi Y, Suzuki T, Watanabe K. 2006a. Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures. J Biol Chem 281: 14296-14306. (Pubitemid 43848358)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.20
, pp. 14296-14306
-
-
Shigi, N.1
Sakaguchi, Y.2
Suzuki, T.3
Watanabe, K.4
-
35
-
-
33644854175
-
Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA
-
DOI 10.1074/jbc.M510771200
-
Shigi N, Suzuki T, Terada T, Shirouzu M, Yokoyama S, Watanabe K. 2006b. Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA. J Biol Chem 281: 2104-2113. (Pubitemid 43845799)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.4
, pp. 2104-2113
-
-
Shigi, N.1
Suzuki, T.2
Terada, T.3
Shirouzu, M.4
Yokoyama, S.5
Watanabe, K.6
-
36
-
-
0027244036
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Steinberg S, Misch A, Sprinzl M. 1993. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 21: 3011-3015. (Pubitemid 23223600)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.13
, pp. 3011-3015
-
-
Steinberg, S.1
Misch, A.2
Sprinzl, M.3
-
37
-
-
34548789633
-
Mass spectrometric identification and characterization of RNA-modifying enzymes
-
Suzuki T, Ikeuchi Y, Noma A, Suzuki T, Sakaguchi Y. 2007. Mass spectrometric identification and characterization of RNA-modifying enzymes. Methods Enzymol 425: 211-229.
-
(2007)
Methods Enzymol
, vol.425
, pp. 211-229
-
-
Suzuki, T.1
Ikeuchi, Y.2
Noma, A.3
Suzuki, T.4
Sakaguchi, Y.5
-
38
-
-
80755169463
-
Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases
-
Suzuki T, Nagao A, Suzuki T. 2011. Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases. Annu Rev Genet 45: 299-329.
-
(2011)
Annu Rev Genet
, vol.45
, pp. 299-329
-
-
Suzuki, T.1
Nagao, A.2
Suzuki, T.3
-
39
-
-
0031574072
-
The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
DOI 10.1093/nar/25.24.4876
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882. (Pubitemid 28022245)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
40
-
-
2342574137
-
1A58 tRNA methyltransferase
-
DOI 10.1093/nar/gkh207
-
Varshney U, Ramesh V, Madabushi A, Gaur R, Subramanya HS, RajBhandary UL. 2004. Mycobacterium tuberculosis Rv2118c codes for a single-component homotetrameric m1A58 tRNA methyltransferase. Nucleic Acids Res 32: 1018-1027. (Pubitemid 38854702)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.3
, pp. 1018-1027
-
-
Varshney, U.1
Ramesh, V.2
Madabushi, A.3
Gaur, R.4
Subramanya, H.S.5
RajBhandary, U.L.6
-
41
-
-
0034635519
-
Leu(UUR)with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes
-
Leu(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes. J Biol Chem 275: 4251-4257.
-
(2000)
J Biol Chem
, vol.275
, pp. 4251-4257
-
-
Yasukawa, T.1
Suzuki, T.2
Suzuki, T.3
Ueda, T.4
Ohta, S.5
Watanabe, K.6
-
42
-
-
0026014994
-
Ser (UCN)
-
Yokogawa T, Watanabe Y, Kumazawa Y, Ueda T, Hirao I, Miura K, Watanabe K. 1991. A novel cloverleaf structure found in mammalian mitochondrial tRNASer(UCN). Nucleic Acids Res 19: 6101-6105. (Pubitemid 21913024)
-
(1991)
Nucleic Acids Research
, vol.19
, Issue.22
, pp. 6101-6105
-
-
Yokogawa, T.1
Watanabe, Y.-I.2
Kumazawa, Y.3
Ueda, T.4
Hirao, I.5
Miura, K.-I.6
Watanabe, K.7
-
43
-
-
0023461673
-
Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles
-
Yokoyama S, Watanabe K, Miyazawa T. 1987. Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles. Adv Biophys 23: 115-147.
-
(1987)
Adv Biophys
, vol.23
, pp. 115-147
-
-
Yokoyama, S.1
Watanabe, K.2
Miyazawa, T.3
|