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Volumn 18, Issue 12, 2012, Pages 2269-2276

Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs

Author keywords

1 methyladenosine; Mitochondria; RNA modification; Trmt61B; tRNA

Indexed keywords

1 METHYLADENOSINE; METHYLTRANSFERASE; MITOCHONDRIAL RNA; TRANSFER RNA; TRMT61B PROTEIN; UNCLASSIFIED DRUG;

EID: 84869768792     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.035600.112     Document Type: Article
Times cited : (164)

References (43)
  • 2
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • DOI 10.1038/290457a0
    • Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, et al. 1981. Sequence and organization of the human mitochondrial genome. Nature 290: 457-465. (Pubitemid 11159074)
    • (1981) Nature , vol.290 , Issue.5806 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 3
    • 0032428969 scopus 로고    scopus 로고
    • The essential Gcd10p-Gcd14p nuclear complex 15 required for 1- methyladenosine modification and maturation of initiator methionyl-tRNA
    • Anderson J, Phan L, Cuesta R, Carlson BA, Pak M, Asano K, Bjork GR, Tamame M, Hinnebusch AG. 1998. The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev 12: 3650-3662. (Pubitemid 29019646)
    • (1998) Genes and Development , vol.12 , Issue.23 , pp. 3650-3662
    • Anderson, J.1    Phan, L.2    Cuesta, R.3    Carlson, B.A.4    Pak, M.5    Asano, K.6    Bjork, G.R.7    Tamame, M.8    Hinnebusch, A.G.9
  • 5
    • 0025815046 scopus 로고
    • The 3 A crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination
    • Basavappa R, Sigler PB. 1991. The 3 Å crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination. EMBO J 10: 3105-3111. (Pubitemid 21905332)
    • (1991) EMBO Journal , vol.10 , Issue.10 , pp. 3105-3111
    • Basavappa, R.1    Sigler, P.B.2
  • 6
    • 0035955465 scopus 로고    scopus 로고
    • In silico analysis of the tRNA:m1A58 methyltransferase family: Homology-based fold prediction and identification of new members from Eubacteria and Archaea
    • DOI 10.1016/S0014-5793(01)02962-3, PII S0014579301029623
    • Bujnicki JM. 2001. In silico analysis of the tRNA:m1A58 methyltransferase family: Homology-based fold prediction and identification of new members from Eubacteria and Archaea. FEBS Lett 507: 123-127. (Pubitemid 33001527)
    • (2001) FEBS Letters , vol.507 , Issue.2 , pp. 123-127
    • Bujnicki, J.M.1
  • 8
    • 84869822219 scopus 로고    scopus 로고
    • LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria
    • Chujo T, Ohira T, Sakaguchi Y, Goshima N, Nomura N, Nagao A, Suzuki T. 2012. LRPPRC/SLIRP suppresses PNPase-mediated mRNA decay and promotes polyadenylation in human mitochondria. Nucleic Acids Res 40: 8033-8047.
    • (2012) Nucleic Acids Res , vol.40 , pp. 8033-8047
    • Chujo, T.1    Ohira, T.2    Sakaguchi, Y.3    Goshima, N.4    Nomura, N.5    Nagao, A.6    Suzuki, T.7
  • 9
    • 0029915525 scopus 로고    scopus 로고
    • Computational method to predict mitochondrially imported proteins and their targeting sequences
    • Claros MG, Vincens P. 1996. Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur J Biochem 241: 779-786. (Pubitemid 26379380)
    • (1996) European Journal of Biochemistry , vol.241 , Issue.3 , pp. 779-786
    • Claros, M.G.1    Vincens, P.2
  • 12
    • 0018716671 scopus 로고
    • A detailed model of reverse transcription and tests of crucial aspects
    • Gilboa E, Mitra SW, Goff S, Baltimore D. 1979. A detailed model of reverse transcription and tests of crucial aspects. Cell 18: 93-100. (Pubitemid 10228240)
    • (1979) Cell , vol.18 , Issue.1 , pp. 93-100
    • Gilboa, E.1    Mitra, S.W.2    Goff, S.3    Baltimore, D.4
  • 14
    • 0035860329 scopus 로고    scopus 로고
    • Crystal structure of Rv2118c: An AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv
    • DOI 10.1006/jmbi.2001.4935
    • Gupta A, Kumar PH, Dineshkumar TK, Varshney U, Subramanya HS. 2001. Crystal structure of Rv2118c: An AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv. J Mol Biol 312: 381-391. (Pubitemid 32928133)
    • (2001) Journal of Molecular Biology , vol.312 , Issue.2 , pp. 381-391
    • Gupta, A.1    Kumar, P.H.2    Dineshkumar, T.K.3    Varshney, U.4    Subramanya, H.S.5
  • 15
    • 0032052242 scopus 로고    scopus 로고
    • The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
    • DOI 10.1093/nar/26.7.1636
    • Helm M, Brule H, Degoul F, Cepanec C, Leroux JP, Giege R, Florentz C. 1998. The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res 26: 1636-1643. (Pubitemid 28291797)
    • (1998) Nucleic Acids Research , vol.26 , Issue.7 , pp. 1636-1643
    • Helm, M.1    Brule, H.2    Degoul, F.3    Cepanec, C.4    Leroux, J.-P.5    Giege, R.6    Florentz, C.7
  • 16
    • 0032867610 scopus 로고    scopus 로고
    • 1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys
    • 1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. Biochemistry 38: 13338-13346.
    • (1999) Biochemistry , vol.38 , pp. 13338-13346
    • Helm, M.1    Giege, R.2    Florentz, C.3
  • 20
    • 34047177954 scopus 로고    scopus 로고
    • Specific residues at every third position of siRNA shape its efficient RNAi activity
    • doi: 10.1093/nar/gkl1120
    • Katoh T, Suzuki T. 2007. Specific residues at every third position of siRNA shape its efficient RNAi activity. Nucleic Acids Res 35: e27. doi: 10.1093/nar/gkl1120.
    • (2007) Nucleic Acids Res , vol.35
    • Katoh, T.1    Suzuki, T.2
  • 21
    • 61449186404 scopus 로고    scopus 로고
    • Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
    • Katoh T, Sakaguchi Y, Miyauchi K, Suzuki T, Kashiwabara S, Baba T, Suzuki T. 2009. Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. Genes Dev 23: 433-438.
    • (2009) Genes Dev , vol.23 , pp. 433-438
    • Katoh, T.1    Sakaguchi, Y.2    Miyauchi, K.3    Suzuki, T.4    Kashiwabara, S.5    Baba, T.6    Suzuki, T.7
  • 22
    • 0026573082 scopus 로고
    • Leu(UUR) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes
    • Leu(UUR) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and strokelike episodes. Mol Cell Biol 12: 480-490.
    • (1992) Mol Cell Biol , vol.12 , pp. 480-490
    • King, M.P.1    Koga, Y.2    Davidson, M.3    Schon, E.A.4
  • 24
    • 0035941287 scopus 로고    scopus 로고
    • The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present
    • Koc EC, Burkhart W, Blackburn K, Moyer MB, Schlatzer DM, Moseley A, Spremulli LL. 2001. The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. J Biol Chem 276: 43958-43969.
    • (2001) J Biol Chem , vol.276 , pp. 43958-43969
    • Koc, E.C.1    Burkhart, W.2    Blackburn, K.3    Moyer, M.B.4    Schlatzer, D.M.5    Moseley, A.6    Spremulli, L.L.7
  • 25
    • 27844530636 scopus 로고    scopus 로고
    • Natural history of S-adenosylmethionine- binding proteins
    • doi: 10.1186/ 1472-6807-5-19
    • Kozbial PZ, Mushegian AR. 2005. Natural history of S-adenosylmethionine- binding proteins. BMC Struct Biol 5: 19. doi: 10.1186/ 1472-6807-5-19.
    • (2005) BMC Struct Biol , vol.5 , pp. 19
    • Kozbial, P.Z.1    Mushegian, A.R.2
  • 26
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan JF, Groebe DR, Witherell GW, Uhlenbeck OC. 1987. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15: 8783-8798.
    • (1987) Nucleic Acids Res , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 32
    • 77953643795 scopus 로고    scopus 로고
    • Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs
    • Saikia M, Fu Y, Pavon-Eternod M, He C, Pan T. 2010. Genome-wide analysis of N1-methyl-adenosine modification in human tRNAs. RNA 16: 1317-1327.
    • (2010) RNA , vol.16 , pp. 1317-1327
    • Saikia, M.1    Fu, Y.2    Pavon-Eternod, M.3    He, C.4    Pan, T.5
  • 33
    • 15044362242 scopus 로고    scopus 로고
    • Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm
    • DOI 10.1093/nar/gki309
    • Sakurai M, Ohtsuki T, Watanabe K. 2005. Modification at position 9 with 1-methyladenosine is crucial for structure and function of nematode mitochondrial tRNAs lacking the entire T-arm. Nucleic Acids Res 33: 1653-1661. (Pubitemid 41418393)
    • (2005) Nucleic Acids Research , vol.33 , Issue.5 , pp. 1653-1661
    • Sakurai, M.1    Ohtsuki, T.2    Watanabe, K.3
  • 34
    • 33744946077 scopus 로고    scopus 로고
    • Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures
    • DOI 10.1074/jbc.M511675200
    • Shigi N, Sakaguchi Y, Suzuki T, Watanabe K. 2006a. Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures. J Biol Chem 281: 14296-14306. (Pubitemid 43848358)
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.20 , pp. 14296-14306
    • Shigi, N.1    Sakaguchi, Y.2    Suzuki, T.3    Watanabe, K.4
  • 35
  • 36
    • 0027244036 scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Steinberg S, Misch A, Sprinzl M. 1993. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 21: 3011-3015. (Pubitemid 23223600)
    • (1993) Nucleic Acids Research , vol.21 , Issue.13 , pp. 3011-3015
    • Steinberg, S.1    Misch, A.2    Sprinzl, M.3
  • 37
    • 34548789633 scopus 로고    scopus 로고
    • Mass spectrometric identification and characterization of RNA-modifying enzymes
    • Suzuki T, Ikeuchi Y, Noma A, Suzuki T, Sakaguchi Y. 2007. Mass spectrometric identification and characterization of RNA-modifying enzymes. Methods Enzymol 425: 211-229.
    • (2007) Methods Enzymol , vol.425 , pp. 211-229
    • Suzuki, T.1    Ikeuchi, Y.2    Noma, A.3    Suzuki, T.4    Sakaguchi, Y.5
  • 38
    • 80755169463 scopus 로고    scopus 로고
    • Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases
    • Suzuki T, Nagao A, Suzuki T. 2011. Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases. Annu Rev Genet 45: 299-329.
    • (2011) Annu Rev Genet , vol.45 , pp. 299-329
    • Suzuki, T.1    Nagao, A.2    Suzuki, T.3
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0034635519 scopus 로고    scopus 로고
    • Leu(UUR)with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes
    • Leu(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes. J Biol Chem 275: 4251-4257.
    • (2000) J Biol Chem , vol.275 , pp. 4251-4257
    • Yasukawa, T.1    Suzuki, T.2    Suzuki, T.3    Ueda, T.4    Ohta, S.5    Watanabe, K.6
  • 43
    • 0023461673 scopus 로고
    • Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles
    • Yokoyama S, Watanabe K, Miyazawa T. 1987. Dynamic structures and functions of transfer ribonucleic acids from extreme thermophiles. Adv Biophys 23: 115-147.
    • (1987) Adv Biophys , vol.23 , pp. 115-147
    • Yokoyama, S.1    Watanabe, K.2    Miyazawa, T.3


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