Comb-p: Software for combining, analyzing, grouping and correcting spatially correlated P-values

Bioinformatics

Volumn 28, Issue 22, 2012, Pages 2986-2988

  Pedersen, Brent S ^a   Schwartz, David A ^a   Yang, Ivana V ^a   Kechris, Katerina J ^b  

^a UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; DNA PROBE; DNA SEQUENCE; GENETIC ASSOCIATION; GENETICS; GENOMICS; HUMAN; METHODOLOGY;

DNA PROBES; GENOME-WIDE ASSOCIATION STUDY; GENOMICS; HUMANS; PROGRAMMING LANGUAGES; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84869421697     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts545     Document Type: Article

References (13)

1. Biehs, B. et al. (2010) Hedgehog targets in the Drosophila embryo and the mechanisms that generate tissue-specific outputs of Hedgehog signaling. Development, 137, 3887-3898.
2. Fisher, R.A. (1948) Questions and answers #14. Am. Stat., 2, 30-31.
3. Hsieh, T.F. et al. (2009) Genome-wide demethylation of Arabidopsis endosperm. Science, 324, 1451-1454.
4. Irizarry, R.A. et al. (2008) Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Res., 18, 780-790. (Pubitemid 351645068)
5. Irizarry, R.A. et al. (2009) The human colon cancer methylome shows similar hypoand hypermethylation at conserved tissue-specific CpG island shores. Nat. Genet., 41, 178-186.
6. Kechris, K.J. et al. (2010) Generalizing moving averages for tiling arrays using combined p-value statistic. Stat. Appl. Genet. Mol. Biol., 9, Article 29.
7. Kent, W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1106.
8. Liptak, T. (1958) On the combination of independent tests. Magyar Tudomanyos. Akademia Matematikai Kutato Intezetenek Kozlemenyei, 3, 171-197.
9. Pedersen, B.S. et al. (2011) MethylCoder: software pipeline for bisulfite-treated sequences. Bioinformatics, 27, 2435-2436.
10. Sidá k, Z. (1967). Rectangular confidence region for the means of multivariate normal distributions. J. Am. Stat. Assoc, 62, 626-633.
11. Stouffer, S.A. et al. (1949) The American Soldier. Vol. 1: Adjustment during Army Life. Princeton University Press, Princeton, NJ.
12. van Steensel, B. et al. (2001) Chromatin profiling using targeted DNA adenine methyltransferase. Nat. Genet., 27, 304-308. (Pubitemid 32201852)
13. Zaykin, D.L. et al. (2002) Truncated product method for combining p-values. Genet. Epidemiol., 22, 170-185.