Identification and Re-Evaluation of Freshwater Catfishes through DNA Barcoding

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Bhattacharjee, Maloyjo J ^a   Laskar, Boni A ^a   Dhar, Bishal ^a   Ghosh, Sankar K ^a  

^a ASSAM UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

AMBLYCEPS APANGI; ANIMAL TISSUE; ARTICLE; BAGARIUS YARRELLI; CATFISH; CLARIAS BATRACHUS; CONTROLLED STUDY; CYTOCHROME OXIDASE C SUBUNIT I GENE; DNA BARCODING; ERETHISTES PUSILLUS; FRESHWATER FISH; GENE; GENE SEQUENCE; GENETIC VARIABILITY; GLYPTOTHORAX TELCHITTA; GLYPTOTHORAX TRILINEATUS; INDIA; MYSTUS HORAI; NONHUMAN; NUCLEOTIDE SEQUENCE; SPECIES DIFFERENCE; SPECIES IDENTIFICATION;

ANIMALS; AQUACULTURE; CATFISHES; CONSERVATION OF NATURAL RESOURCES; DNA BARCODING, TAXONOMIC; FRESH WATER; INDIA; SPECIES SPECIFICITY;

AMBLYCEPS; BAGARIUS YARRELLI; CLARIAS BATRACHUS; ERETHISTES PUSILLUS; GLYPTOTHORAX; GLYPTOTHORAX TRILINEATUS; MYSTUS; SILURIDAE; SILURIFORMES;

EID: 84869234777     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049950     Document Type: Article

References (42)

1. Layher WG, Maughan OE, (1985) Relations between habitat variables and channel catfish populations in prairie streams. Transactions of the American Fisheries Society 114: 771-781.
2. FAO (2008-2012) Small-scale fisheries- website. Nutrition and food security. In: FAO Fisheries and Aquaculture Department (online) Rome. Available:http://www.fao.org/fishery/topic/16603/en. Accessed 2012 Mar 19.
3. Myers N, (1999) What we must do to counter the biotic holocaust. International wildlife 29: 6.
4. Ponniah AG, Sarkar UK(2000) Fish biodiversity of North East India: National Bureau of Fish Genetic Resources.
5. Hoagland KE (1996) The Taxonomic Impediment and the Convention on Biodiversity. ASC News 24: 61-62, 66-67.
6. Talwar PK, Jhingran AG, (1991) Inland fishes of India and adjacent countries: Oxford & IBH Pub. Co. Vol 2: 554-1158.
7. Roberts TR, (1992) Revision of the striped catfishes of Thailand misidentified as Mystus vittatus, with description of two new species (Pisces: Bagridae). Ichthyol. Explor. Freshwat 3: 77-88.
8. Darshan A, Anganthoibi N, Vishwanath W, (2010) Redescription of the striped catfish Mystus carcio (Hamilton) (Siluriformes: Bagridae). Zootaxa 2475: 48-54.
9. Kottelat M, Lim KKP, (1995) Freshwater fishes of Sarawak and Brunei Darussalam: a preliminary annotated checklist. Sarawak Museum Journal 48: 227-258.
10. Ng HH, Hadiaty RK, (2009) Ompok brevirictus, new catfish (Teleostei: Siluridae) from Sumatra. Zootaxa 2232: 50-60.
11. Vishwanath W, Linthoingambi I, (2007) Redescription of catfishes Amblyceps arunachalensis Nath and Dey and Amblyceps apangi Nath and Dey (Teleostei:Amblyciptidae). Zoos' Print Journal 22: 2662-2664.
12. Ferraris CJ Jr, (2007) Checklist of catfishes, recent and fossil (Osteichthyes: Siluriformes) and catalogue of siluriform primary types. Zootaxa 1418: 1-628.
13. Hebert PDN, Cywinska A, Ball SL, deWaard JR, (2003) Biological identifications through DNA barcodes. Proc Biol Sci 270: 313-321.
14. Hebert PDN, Stoekle M, Zemlak T, Francis CM, (2004) Identification of birds through DNA barcodes. Plos Biology 2: 1657-1668.
15. Clare EB, Lim BK, Engstrom MD, Eger JL, Hebert PDN, (2006) DNA barcoding of Neotropical bats: species identification and discovery within Guyana. Molecular Ecology Notes 7: 184-190.
16. Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proc Natl Acad Sci USA 105: 12359-12364.
17. Frezal L, Leblois R, (2008) Four years of DNA barcoding: current advances and prospects. Infection, genetics and evolution. Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases 8: 727-736.
18. Ratnasingham S, Hebert PDN, (2007) BOLD: The Barcode of Life Data System. Molecular Ecology Notes 7: 355-364 Available:http://www.barcodinglife.org.
19. Ward RD, Hanner R, Hebert PDN, (2009) The campaign to DNA barcode all fishes, FISH-BOL. Journal of Fish Biology 74: 329-356.
20. April J, Mayden RL, Hanner RH, Bernatchez L, (2011) Genetic calibration of species diversity among North America's freshwater fishes. Proc Natl Acad Sci USA 108: 10602-10607.
21. Lowenstein JH, Burger J, Jeitner CW, Amato G, Kolokotronis SO, et al. (2010) DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers. Biology Letters 6: 692-695.
22. Wong LL, Peatman E, Lu J, Kucuktas H, He S, et al. (2011) DNA barcoding of catfish: species authentication and phylogenetic assessment. PloS ONE 6: e17812.
23. Steinke D, Zemlak TS, Hebert PDN, (2009) Barcoding nemo: DNA-based identifications for the ornamental fish trade. PloS ONE 4: e6300.
24. Mohd-Shamsudin MI, Fard MZ, Mather PB, Suleiman Z, Hassan R, et al. (2011) Molecular characterization of relatedness among colour variants of Asian Arowana (Scleropages formosus). Gene 490: 47-53.
25. Collins RA, Armstrong KF, Meier R, Yi Y, Brown SD, et al. (2012) Barcoding and border biosecurity: identifying cyprinid fishes in the aquarium trade. PloS ONE 7: e28381.
26. Jayaram KC (1999) The freshwater fishes of the Indian region: Narendra Pub. House.
27. Eschmeyer WN, Frickle R (2011) Catalog of fishes. California Academy of Sciences. Available:http://research.calacademy.org/research/ichthyology/catalog/fishcatmain.asp. Accessed 2011 Nov 17.
28. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
29. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN, (2005) DNA barcoding of Australia's fish species. Philos Trans R Soc Lond B Biol Sci 360: 1847-1857.
30. Zhang DX, Hewitt GM, (1996) Nuclear integrations: challenge for mitochondrial DNA markers. Trends in Ecology and Evolution 11: 247-251.
31. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
32. Thompson JD, Gibson TJ, Higgins DG (2002) Multiple sequence alignment using ClustalW and ClustalX. Current protocols in bioinformatics/editorial board, Andreas D Baxevanis [et al] Chapter 2: Unit 2.3.
33. Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
34. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 10: 2731-2739.
35. Felsenstein J, (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
36. Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E, et al. (2008) Identifying Canadian Freshwater Fishes through DNA Barcodes. PLoS ONE 3: e2490.
37. Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, et al. (2011) DNA barcoding of Indian marine fishes. Molecular Ecology Resources 11: 60-71.
38. Mabragaña E, Díaz de Astarloa JM, Hanner R, Zhang J, González Castro M, (2011) DNA Barcoding Identifies Argentine Fishes from Marine and Brackish Waters. PLoS ONE 6: e28655 doi:10.1371/journal.pone.0028655.
39. Talwar PK, Jhingran AG, (1991) Inland fishes of India and adjacent countries: Oxford & IBH Pub. Co. Vol 2: 554-560.
40. Roberts TR, (1983) Revision of south and southeast Asian sisorid catfish genus Bagarius, with description of a new species from the Mekong. Copeia 2: 435-445.
41. Nath P, Dey SC, (1989) Two new species of the genus Amblyceps Blyth from Arunachal Pradesh, India. Journal of Assam science 32: 1-6.
42. Ng HH, (2005) Amblyceps carinatum, a new species of hillstream catfish from Myanmar (Teleostei: Amblycipitidae). Raffles bulletin of Zoology 53: 243-249.