DNA barcoding Indian marine fishes

Molecular Ecology Resources

Volumn 11, Issue 1, 2011, Pages 60-71

  Lakra, W S ^a   Verma, M S ^a   Goswami, M ^a   Lal, K K ^a   Mohindra, V ^a   Punia, P ^a   Gopalakrishnan, A ^a   Singh, K V ^a   Ward, R D ^b   Hebert, P ^c  

^a NATIONAL BUREAU OF FISH GENETIC RESOURCES   (India)

^b CSIRO   (Australia)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

Barcoding; Indian fishes; MtDNA; Phylogeny

Indexed keywords

CYTOCHROME C OXIDASE; FISH PROTEIN; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CLASSIFICATION; DNA BARCODING; EVALUATION; FISH; GENETICS; INDIA; METHODOLOGY; MOLECULAR GENETICS; PHYLOGENY;

ANIMALS; DNA BARCODING, TAXONOMIC; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; FISH PROTEINS; FISHES; INDIA; MOLECULAR SEQUENCE DATA; PHYLOGENY;

ANIMALIA; CARANGIDAE; CLUPEIDAE; MULLIDAE; PATAECUS; PISCES; POLYNEMIDAE; SCIAENIDAE; SCOMBRIDAE; SILURIDAE;

EID: 78650127363     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2010.02894.x     Document Type: Article

References (29)

1. Bensasson D, Zhang DX, Hartl DL, Hewitt GM (2001) Mitochondrial pseudogenes: Evolution's misplaced witnesses. Trends in Ecology and Evolution, 16, 314-321.
2. FAO (2002) The state of world fisheries and aquaculture, part 1: world review of fisheries and aquaculture. Food and Agricultural Organization, Fisheries Department, Rome.
3. FAO (2004) Capture production 2002. FAO yearbook of fishery statistics 94/1. Food and Agricultural Organization, Fisheries Department, Rome.
4. Froese R, Pauly D (2009) FishBase. World Wide Web electronic publication., version (02/2009).
5. Hajibabaei M, De Waard JR, Ivanova N et al. (2005) Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society B, 360, 1959-1967.
6. Hebert PDN, Cywinska A, Ball SL, Ward JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B, 270, 313-322.
7. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004a) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences USA, 101, 14812-14817.
8. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004b) Identification of birds through DNA barcodes. Public Library of Science, 2, 1657-1663.
9. Hogg ID, Hebert PDN (2004) Biological identification of springtails (Collembola: Hexapoda) from the Canadian Arctic, using mitochondrial DNA barcodes. Canadian Journal of Zoology, 82, 749-754.
10. Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E (2008) Identifying Canadian freshwater fishes through DNA barcodes. Public Library of Science, 3, e2490. doi:.
11. Kerr KC, Stoeckle MY, Dove CJ, Weigt LA, Francis CM (2007) Comprehensive DNA barcode coverage of North American birds. Molecular Ecology Notes, 7, 535-543.
12. Kimura M (1980) A simple method of estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
13. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150-163.
14. Lakra WS, Goswami M, Gopalakrishnan A (2009) Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: perciformes, Sciaenidae) based on 16S rRNA and cytochrome oxidase subunit I mitochondrial genes. Molecular Biology Reports, 36, 831-839.
15. Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. PLOS Biology, 3, 2229-2238.
16. Moritz C, Cicero C (2004) DNA barcoding: promise and pitfalls. Public Library of Science, 2, e354.
17. Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP (2006) Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology, 55, 595-606.
18. Ratnasingham S, Hebert PDN (2007) BOLD: the Barcode of Life Data System. Molecular Ecology Notes, 7, 355-364.
19. Richly E, Leister D (2004) NUMTs in sequenced eukaryotic genomes. Molecular Biology Evolution, 21, 1081-1084.
20. Ruzzante DE, Taggart CT, Cook C, Goddard S (1996) Genetic differentiation between inshore and offshore Atlantic cod Gadus morhua) off Newfoundland: microsatellite DNA variation and antifreeze level. Canadian Journal of Fisheries and Aquatic Science, 53, 634-645.
21. Saccone C, De GiorgiC, Gissi C, Pesole G, Reyes A (1999) Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene, 238, 195-209.
22. Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopedia of life:an introduction to DNA barcoding. Philosophical Transactions of the Royal Society B, 360, 1805-1811.
23. Smith PJ, McVeagh SM, Steinke D (2008) DNA barcoding for the identification of smoked fish products. Journal of Fish Biology, 72, 464.
24. Spies IB, Gaichas S, Stevenson DE, Orr JW, Canino MF (2006) DNA based identification of Alaska skates (Amblyraja, Bathyraja and Raja: Rajidae) using cytochrome c oxidase submit (COI) variation. Journal of Fish Biology, 69(B), 283-292.
25. Steinke D, Vences M, Salzburger W, Meyer A (2005) TaxI: a software tool for DNA barcoding using distance methods. Philosophical Transactions of the Royal Society, London, Series B, 360, 1847-1857.
26. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876-4882.
27. Ward RD, Zemlac TC, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B, 360, 1847-1857.
28. Ward RD, Holmes BH, Yearsley GK (2008) DNA barcoding reveals a likely second species of Asian sea bass (barramundi) (Lates calcarifer). Journal of Fish Biology, 72, 458-463.
29. Ward RD, Hanner R, Hebert PDN (2009) The campaign to DNA barcode all fishes, FISH-VBOL. Journal of Fish Biology, 74, 329-356.