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Volumn 10, Issue , 2012, Pages

Logic modeling and the ridiculome under the rug

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; METABOLISM; METHODOLOGY; SYSTEM ANALYSIS; SYSTEMS BIOLOGY;

EID: 84869219619     PISSN: None     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-10-92     Document Type: Article
Times cited : (6)

References (28)
  • 1
    • 77950651089 scopus 로고    scopus 로고
    • The edges of understanding
    • 10.1186/1741-7007-8-40, 2864098, 20385033
    • Lander AD. The edges of understanding. BMC Biol 2010, 8:40-43. 10.1186/1741-7007-8-40, 2864098, 20385033.
    • (2010) BMC Biol , vol.8 , pp. 40-43
    • Lander, A.D.1
  • 2
    • 80052592949 scopus 로고    scopus 로고
    • Crowdsourcing network inference: the DREAM predictive signaling network challenge
    • 10.1126/scisignal.2002212, 3465072, 21900204
    • Prill RJ, Saez-Rodriguez J, Alexopoulos LG, Sorger PK, Stolovitzky G. Crowdsourcing network inference: the DREAM predictive signaling network challenge. Sci Signal 2011, 4:mr7. 10.1126/scisignal.2002212, 3465072, 21900204.
    • (2011) Sci Signal , vol.4
    • Prill, R.J.1    Saez-Rodriguez, J.2    Alexopoulos, L.G.3    Sorger, P.K.4    Stolovitzky, G.5
  • 3
    • 43149109269 scopus 로고    scopus 로고
    • Logic models of pathway biology
    • 10.1016/j.drudis.2008.03.019, 18468563
    • Watterson S, Marshall S, Ghazal P. Logic models of pathway biology. Drug Discov Today 2008, 13:447. 10.1016/j.drudis.2008.03.019, 18468563.
    • (2008) Drug Discov Today , vol.13 , pp. 447
    • Watterson, S.1    Marshall, S.2    Ghazal, P.3
  • 4
    • 84867272347 scopus 로고    scopus 로고
    • Boolean modeling in systems biology: an overview of methodology and applications
    • 10.1088/1478-3975/9/5/055001, 23011283
    • Wang RS, Saadatpour A, Albert R. Boolean modeling in systems biology: an overview of methodology and applications. Phys Biol 2012, 9:055001. 10.1088/1478-3975/9/5/055001, 23011283.
    • (2012) Phys Biol , vol.9 , pp. 055001
    • Wang, R.S.1    Saadatpour, A.2    Albert, R.3
  • 5
    • 77951962279 scopus 로고    scopus 로고
    • Odefy-from discrete to continuous models
    • 10.1186/1471-2105-11-233, 2873544, 20459647
    • Krumsiek J, Polsterl S, Wittmann DM, Theis FJ. Odefy-from discrete to continuous models. BMC Bioinformatics 2010, 11:233. 10.1186/1471-2105-11-233, 2873544, 20459647.
    • (2010) BMC Bioinformatics , vol.11 , pp. 233
    • Krumsiek, J.1    Polsterl, S.2    Wittmann, D.M.3    Theis, F.J.4
  • 6
    • 77953486933 scopus 로고    scopus 로고
    • Drawing an elefant with four complex parameters
    • Mayer J, Khairy K, Howard J. Drawing an elefant with four complex parameters. Am J Phys 2010, 78:648-649.
    • (2010) Am J Phys , vol.78 , pp. 648-649
    • Mayer, J.1    Khairy, K.2    Howard, J.3
  • 9
    • 84870816675 scopus 로고    scopus 로고
    • Bioconductor
    • Bioconductor. , http://www.bioconductor.org
  • 10
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 10.1101/gr.1239303, 403769, 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 14
    • 40749087306 scopus 로고    scopus 로고
    • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    • 10.1093/bioinformatics/btm553, 18024474
    • Zinovyev A, Viara E, Calzone L, Barillot E. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. Bioinformatics 2008, 24:876-877. 10.1093/bioinformatics/btm553, 18024474.
    • (2008) Bioinformatics , vol.24 , pp. 876-877
    • Zinovyev, A.1    Viara, E.2    Calzone, L.3    Barillot, E.4
  • 15
    • 0037376655 scopus 로고    scopus 로고
    • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
    • 10.1016/S0955-0674(03)00017-6, 12648679
    • Tyson JJ, Chen KC, Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr Opin Cell Biol 2003, 15:221-231. 10.1016/S0955-0674(03)00017-6, 12648679.
    • (2003) Curr Opin Cell Biol , vol.15 , pp. 221-231
    • Tyson, J.J.1    Chen, K.C.2    Novak, B.3
  • 16
    • 20444384349 scopus 로고    scopus 로고
    • Intracellular signaling: spatial and temporal control
    • 10.1152/physiol.00052.2004, 15888574
    • Moraru II, Loew LM. Intracellular signaling: spatial and temporal control. Physiology 2005, 20:169-179. 10.1152/physiol.00052.2004, 15888574.
    • (2005) Physiology , vol.20 , pp. 169-179
    • Moraru, I.I.1    Loew, L.M.2
  • 17
    • 70350364712 scopus 로고    scopus 로고
    • Molecular machines or pleiomorphic ensembles: signaling complexes revisited
    • 10.1186/jbiol185, 2776906, 19835637
    • Mayer BJ, Blinov ML, Loew LM. Molecular machines or pleiomorphic ensembles: signaling complexes revisited. J Biol 2009, 8:81. 10.1186/jbiol185, 2776906, 19835637.
    • (2009) J Biol , vol.8 , pp. 81
    • Mayer, B.J.1    Blinov, M.L.2    Loew, L.M.3
  • 18
    • 65649154507 scopus 로고    scopus 로고
    • Rule-based modeling of biochemical systems with BioNetGen
    • 10.1007/978-1-59745-525-1_5, 19399430
    • Faeder JR, Blinov ML, Hlavacek WS. Rule-based modeling of biochemical systems with BioNetGen. Methods Mol Biol 2009, 500:113-167. 10.1007/978-1-59745-525-1_5, 19399430.
    • (2009) Methods Mol Biol , vol.500 , pp. 113-167
    • Faeder, J.R.1    Blinov, M.L.2    Hlavacek, W.S.3
  • 19
    • 79551555393 scopus 로고    scopus 로고
    • Efficient modeling, simulation and coarse-graining of biological complexity with NFsim
    • 10.1038/nmeth.1546, 21186362
    • Sneddon MW, Faeder JR, Emonet T. Efficient modeling, simulation and coarse-graining of biological complexity with NFsim. Nat Methods 2011, 8:177-183. 10.1038/nmeth.1546, 21186362.
    • (2011) Nat Methods , vol.8 , pp. 177-183
    • Sneddon, M.W.1    Faeder, J.R.2    Emonet, T.3
  • 22
    • 84866130570 scopus 로고    scopus 로고
    • A network-based approach for predicting missing pathway interactions
    • 10.1371/journal.pcbi.1002640, 3420932, 22916002
    • Navlakha S, Gitter A, Bar-Joseph Z. A network-based approach for predicting missing pathway interactions. PLoS Comput Biol 2012, 8:e1002640. 10.1371/journal.pcbi.1002640, 3420932, 22916002.
    • (2012) PLoS Comput Biol , vol.8
    • Navlakha, S.1    Gitter, A.2    Bar-Joseph, Z.3
  • 23
    • 80054062207 scopus 로고    scopus 로고
    • Rule-based multi-level modeling of cell biological systems
    • 10.1186/1752-0509-5-166, 3306009, 22005019
    • Maus C, Rybacki S, Uhrmacher AM. Rule-based multi-level modeling of cell biological systems. BMC Syst Biol 2011, 5:166. 10.1186/1752-0509-5-166, 3306009, 22005019.
    • (2011) BMC Syst Biol , vol.5 , pp. 166
    • Maus, C.1    Rybacki, S.2    Uhrmacher, A.M.3
  • 24
    • 84857222833 scopus 로고    scopus 로고
    • Some lessons about models from Michaelis and Menten
    • Gunawardena J. Some lessons about models from Michaelis and Menten. Mol Biol Cell 2012, 28:517-519.
    • (2012) Mol Biol Cell , vol.28 , pp. 517-519
    • Gunawardena, J.1
  • 27
    • 84866772467 scopus 로고    scopus 로고
    • The end of "small science"?
    • 10.1126/science.1230529, 23019614
    • Alberts B. The end of "small science"?. Science 2012, 337:1583. 10.1126/science.1230529, 23019614.
    • (2012) Science , vol.337 , pp. 1583
    • Alberts, B.1
  • 28
    • 0035256698 scopus 로고    scopus 로고
    • Untangling the ErbB signalling network
    • 10.1038/35052073, 11252954
    • Yarden Y, Sliwkowski MX. Untangling the ErbB signalling network. Nat Rev Mol Cell Biol 2001, 2:127-137. 10.1038/35052073, 11252954.
    • (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 127-137
    • Yarden, Y.1    Sliwkowski, M.X.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.