Stain-Free Quantification of Chromosomes in Live Cells Using Regularized Tomographic Phase Microscopy

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Sung, Yongjin ^a   Choi, Wonshik ^b   Lue, Niyom ^a   Dasari, Ramachandra R ^a   Yaqoob, Zahid ^a  

^a MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^b Korea University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER CELL; CELL COMPOSITION; CELL DIFFERENTIATION; CELL ORGANELLE; CELL STRUCTURE; CELL TYPE; CHROMOSOME; COLON CANCER; CYTOPLASM; DIAGNOSTIC ACCURACY; DRY MASS; HUMAN; HUMAN CELL; IMAGE ANALYSIS; LIVE CELL; METAPHASE; MICROSCOPE; MICROSCOPY; PROCESS DEVELOPMENT; QUANTITATIVE ANALYSIS; REFRACTION INDEX; REGULARIZED TOMOGRAPHIC PHASE MICROSCOPY;

CELL LINE, TUMOR; CHROMOSOMES; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MICROSCOPY, PHASE-CONTRAST; REFRACTOMETRY; REPRODUCIBILITY OF RESULTS; TOMOGRAPHY, OPTICAL;

EID: 84869209197     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049502     Document Type: Article

References (41)

1. Huang D, Swanson EA, Lin CP, Schuman JS, Stinson WG, et al. (1991) Optical coherence tomography. Science 254: 1178.
2. Pierce MC, Strasswimmer J, Park BH, Cense B, De Boer JF, (2004) Advances in optical coherence tomography imaging for dermatology. Journal of investigative dermatology 123: 458-463.
3. Barer R, (1957) Refractometry and interferometry of living cells. J Opt Soc Am 47: 545-556.
4. Barer R, Tkaczyk S, (1954) Refractive index of concentrated protein solutions. Nature 173: 821.
5. Barer R, (1952) Interference microscopy and mass determination. Nature 169: 366-367.
6. Penzkofer A, Shirdel J, Zirak P, Breitkreuz H, Wolf E, (2007) Protein aggregation studied by forward light scattering and light transmission analysis. Chemical Physics 342: 55-63.
7. Min Y, Kristiansen K, Boggs JM, Husted C, Zasadzinski JA, et al. (2009) Interaction forces and adhesion of supported myelin lipid bilayers modulated by myelin basic protein. Proceedings of the National Academy of Sciences 106: 3154.
8. Popescu G, Park YK, Lue N, Best-Popescu C, Deflores L, et al. (2008) Optical imaging of cell mass and growth dynamics. American Journal of Physiology-Cell Physiology 295: C538.
9. Mir M, Wang Z, Shen Z, Bednarz M, Bashir R, et al. (2011) Optical measurement of cycle-dependent cell growth. Proceedings of the National Academy of Sciences 108: 13124-13129.
10. Easty D, Ledoux L, Ambrose E, (1956) The action of ribonuclease on neoplastic growth III. Studies by interference microscopy. Biochimica et Biophysica Acta 20: 528-537.
11. Wax A, Yang C, Müller MG, Nines R, Boone CW, et al. (2003) In situ detection of neoplastic transformation and chemopreventive effects in rat esophagus epithelium using angle-resolved low-coherence interferometry. Cancer Research 63: 3556.
12. Subramanian H, Pradhan P, Liu Y, Capoglu IR, Li X, et al. (2008) Optical methodology for detecting histologically unapparent nanoscale consequences of genetic alterations in biological cells. Proceedings of the National Academy of Sciences 105: 20118-20123.
13. Chalut KJ, Ostrander JH, Giacomelli MG, Wax A, (2009) Light scattering measurements of subcellular structure provide noninvasive early detection of chemotherapy-induced apoptosis. Cancer Research 69: 1199.
14. Dixit R, Cyr R, (2003) Cell damage and reactive oxygen species production induced by fluorescence microscopy: effect on mitosis and guidelines for non invasive fluorescence microscopy. The Plant Journal 36: 280-290.
15. Lakowicz JR, Masters BR, (2008) Principles of fluorescence spectroscopy. Journal of Biomedical Optics 13: 029901.
16. Lauer V, (2002) New approach to optical diffraction tomography yielding a vector equation of diffraction tomography and a novel tomographic microscope. Journal of Microscopy 205: 165-176.
17. Choi W, Fang-Yen C, Badizadegan K, Oh S, Lue N, et al. (2007) Tomographic phase microscopy. Nature Methods 4: 717-719.
18. Charrière F, Marian A, Montfort F, Kuehn J, Colomb T, et al. (2006) Cell refractive index tomography by digital holographic microscopy. Optics Letters 31: 178-180.
19. Sung Y, Choi W, Fang-Yen C, Badizadegan K, Dasari R, et al. (2009) Optical diffraction tomography for high resolution live cell imaging. Optics Express 17: 266-277.
20. Fang-Yen C, Oh S, Park Y, Choi W, Song S, et al. (2007) Imaging voltage-dependent cell motions with heterodyne Mach-Zehnder phase microscopy. Optics Letters 32: 1572-1574.
21. Maire G, Drsek F, Girard J, Giovannini H, Talneau A, et al. (2009) Experimental demonstration of quantitative imaging beyond Abbe's limit with optical diffraction tomography. Physical Review Letters 102: 213905.
22. Isikman SO, Bishara W, Mavandadi S, Yu FW, Feng S, et al. (2011) Lens-free optical tomographic microscope with a large imaging volume on a chip. Proceedings of the National Academy of Sciences 108: 7296.
23. Vertu S, Flügge J, Delaunay JJ, Haeberlé O (2011) Improved and isotropic resolution in tomographic diffractive microscopy combining sample and illumination rotation. Central European Journal of Physics: 1-6.
24. Haeberlé O, Belkebir K, Giovaninni H, Sentenac A, (2010) Tomographic diffractive microscopy: basics, techniques and perspectives. Journal of Modern Optics 57: 686-699.
25. Kak A, Slaney M (1988) Principles of computerized tomographic imaging.
26. Sung Y, Dasari RR, (2011) Deterministic regularization of three-dimensional optical diffraction tomography. J Opt Soc Am A 28: 1562-1565.
27. Reed Teague M, (1983) Deterministic phase retrieval: a Green's function solution. J Opt Soc Am 73: 1434-1441.
28. Streibl N, (1984) Phase imaging by the transport equation of intensity. Optics Communications 49: 6-10.
29. Fienup JR, (1982) Phase retrieval algorithms: a comparison. Applied Optics 21: 2758-2769.
30. Miao J, Sayre D, Chapman H, (1998) Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects. J Opt Soc Am A 15: 1662-1669.
31. Iwai H, Fang-Yen C, Popescu G, Wax A, Badizadegan K, et al. (2004) Quantitative phase imaging using actively stabilized phase-shifting low-coherence interferometry. Optics Letters 29: 2399-2401.
32. Ikeda T, Popescu G, Dasari RR, Feld MS, (2005) Hilbert phase microscopy for investigating fast dynamics in transparent systems. Optics Letters 30: 1165-1167.
33. Kim M, Choi Y, Fang-Yen C, Sung Y, Dasari RR, et al. (2011) High-speed synthetic aperture microscopy for live cell imaging. Optics Letters 36: 148-150.
34. Chatterjee P, Mukherjee S, Chaudhuri S, Seetharaman G, (2009) Application of Papoulis-Gerchberg method in image super-resolution and inpainting. The Computer Journal 52: 80-89.
35. Paul J, Mateyko G, (1970) Quantitative interference microscopy of polytene chromosomes: I. Cytophysical studies on refractive index and dry mass concentration. Experimental Cell Research 59: 227-236.
36. Ayasso H, Duchêne B, Mohammad-Djafari A, (2010) Bayesian inversion for optical diffraction tomography. Journal of Modern Optics 57: 765-776.
37. Candès EJ, Romberg J, Tao T, (2006) Robust uncertainty principles: Exact signal reconstruction from highly incomplete frequency information. Information Theory, IEEE Transactions on 52: 489-509.
38. Donoho DL, (2006) Compressed sensing. Information Theory, IEEE Transactions on 52: 1289-1306.
39. Zhao H, Brown PH, Schuck P, (2011) On the distribution of protein refractive index increments. Biophysical Journal 100: 2309-2317.
40. Zeskind BJ, Jordan CD, Timp W, Trapani L, Waller G, et al. (2007) Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy. Nature Methods 4: 567-569.
41. Wolf E, (1969) Three-dimensional structure determination of semi-transparent objects from holographic data. Optics Communications 1: 153-156.