RNA Aptamers Inhibit the Growth of the Fish Pathogen Viral Hemorrhagic Septicemia Virus (VHSV)

Marine Biotechnology

Volumn 14, Issue 6, 2012, Pages 752-761

  Punnarak, Porntep ^a   Santos, Mudjekeewis D ^a,c   Hwang, Seong Don ^a   Kondo, Hidehiro ^a   Hirono, Ikuo ^a   Kikuchi, Yo ^b   Aoki, Takashi ^a  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^b TOYOHASHI UNIVERSITY OF TECHNOLOGY   (Japan)

^c NATIONAL FISHERIES RESEARCH AND DEVELOPMENT INSTITUTE   (Philippines)

Author keywords

Japanese flounder; Rhodovulum sulfidophilum; RNA aptamer; VHSV

Indexed keywords

DIAGNOSIS; ELECTROPHORETIC MOBILITY; FISH; LIGANDS; OLIGONUCLEOTIDES; VIRUSES;

APTAMER TECHNOLOGY; ELECTROPHORETIC MOBILITY SHIFT ASSAY; JAPANESE FLOUNDER; RHODOVULUM; RNA APTAMER; SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENTS; VHSV; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

RNA;

BIOASSAY; CHEMICAL BINDING; ELECTROKINESIS; FLATFISH; GROWTH RATE; INFECTIOUS DISEASE; INHIBITOR; LIGAND; MOBILITY; RNA; VIRAL DISEASE;

PARALICHTHYS OLIVACEUS; PLEURONECTOIDEI; RHODOVULUM; RHODOVULUM SULFIDOPHILUM; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

EID: 84869147600     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-012-9448-1     Document Type: Article

References (40)

1. Benmansour A, Basurco B, Monnier AF, Vende P, Winton JR, de Kinkelin P (1997) Sequence variation of the glycoprotein gene identifies three distinct lineages within field isolates of viral haemorrhagic septicaemia virus, a fish rhabdovirus. J Gen Virol 78: 2837-2846.
2. Bunka DHJ, Stockley PG (2006) Aptamers come of age-at last. Nature Rev Microbiol 4: 588-596.
3. Byon JY, Takano T, Hirono I, Aoki T (2006) Genome analysis of viral hemorrhagic septicemia virus (VHSV) isolated from Japanese flounder, Paralichthys olivaceus in Japan. Fish Sci 72: 906-908.
4. Caipang CMA, Hirono I, Aoki T (2003) In vitro inhibition of fish rhabdoviruses by Japanese flounder, Paralichthys olivaceus Mx. Virology 317: 373-382.
5. Chico V, Ortega-Villaizan M, Falco A, Tafalla C, Perez L, Coll JM, Estepa A (2009) The immunogenicity of viral haemorragic septicaemia rhabdovirus (VHSV) DNA vaccines can depend on plasmid regulatory sequences. Vaccine 27: 1938-1948.
6. Einer-Jensen K, Ahrens P, Forsberg R, Lorenzen N (2004) Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus. J Gen Virol 85: 1167-1179.
7. Einer-Jensen K, Winton J, Lorenzen N (2005) Genotyping of the fish rhabdovirus, viral haemorrhagic septicaemia virus, by restriction fragment length polymorphisms. Vet Microb 106: 167-178.
8. Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822.
9. Evensen Ø (2009) Development in fish vaccinology with focus on delivery methodologies, adjuvants and formulations. Options Méditerranéennes 86: 177-186.
10. Famulok M, Hartig JS, Mayer G (2007) Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy. Chem Rev 107: 3715-3743.
11. Fischer NO, Tarasow TM, Tok JBH (2007) Aptasensors for biosecurity applications. Curr Opin Chem Biol 11: 316-328.
12. Fornari CS, Kaplan S (1982) Genetic transformation of Rhodopseudomonas sphaeroides by plasmid DNA. J Bacteriol 152: 89-97.
13. Gopinath SCB, Misono TS, Kawasaki K, Mizuno T, Imai M, Odagiri T, Kumar PKR (2006) An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits haemagglutinin-mediated membrane fusion. J Gen Virol 87: 479-487.
14. Green LS, Jellinek D, Bell C, Beebe LA, Feistner BD, Gill SC, Jucker FM, Janjić N (1995) Nuclease-resistant nucleic acid ligands to vascular permeability factor/vascular endothelial growth factor. Chem Biol 2: 683-695.
15. Guthrie JW, Hamula CLA, Zhang H, Le C (2006) Assays for cytokines using aptamers. Methods 38: 324-330.
16. Hermann T, Patel DJ (2000) Adaptive recognition by nucleic acid aptamers. Science 287: 820-825.
17. James W (2007) Aptamers in the virologists' toolkit. J Gen Virol 88: 351-364.
18. Jeon SH, Kayhan B, Ben-Yedidia T, Arnon R (2004) A DNA aptamer prevents influenza infection by blocking the receptor binding region of the viral hemagglutinin. J Biol Chem 279: 48410-48419.
19. Kärkkäinen RM, Drasbek MR, McDowall I, Smith CJ, Young NWG, Bonwick GA (2011) Aptamers for safety and quality assurance in the food industry: detection of pathogens. Int J Food Sci Tech 46: 445-454.
20. Kim R, Faisal M (2011) Emergence and resurgence of the viral hemorrhagic septicemia virus (Novirhabdovirus, Rhabdoviridae, Mononegavirales). J Adv Res 2: 9-23.
21. Lorger M, Engstler M, Homann M, Ulrich Goringer H (2003) Targeting the variable surface of African trypanosomes with variant surface glycoprotein-specific, serum-stable RNA aptamers. Eukaryotic Cell 2: 84-94.
22. Lorenzen N, Olesen NJ, Jørgensen PEV (1988) Production and characterization of monoclonal antibodies to four Egtved virus structural proteins. Dis Aquat Org 4: 35-42.
23. Lorenzen N, Olesen NJ, Koch C (1999) Immunity to VHS in rainbow trout. Aquaculture 172: 41-61.
24. Marshall WS, Kaiser RJ (2004) Recent advances in the high-speed solid phase synthesis of RNA. Curr Opin Chem Biol 8: 222-229.
25. Milligan JF, Groebe DR, Witherell GW, Uhlenbeck OC (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15: 8783-8798.
26. Mourton C, Romestand B, de Kinkelin P, Jeffroy J, Le Gouvello R, Pau B (1992) Highly sensitive immunoassay for direct diagnosis of viral hemorrhagic septicemia which uses antinucleocapsid monoclonal antibodies. J Clinical Microbiol 30: 2338-2345.
27. Nishizawa T, Iida H, Takano R, Isshiki T, Nakajima K, Muroga K (2002) Genetic relatedness among Japanese, American and European isolates of viral hemorrhagic septicemia virus (VHSV) based on partial G and P genes. Dis Aquat Org 48: 143-148.
28. Nishizawa T, Savas H, Işi{dotless}dan H, Üstündaǧ C, Iwamoto H, Yoshimizu M (2006) Genotyping and pathogenicity of viral hemorrhagic septicemia virus from free-living turbot (Psetta maxima) in a Turkish coastal area of the Black Sea. Appl Environ Microbiol 72: 2373-2378.
29. Osborne SE, Matsumura I, Ellington AD (1997) Aptamers as therapeutic and diagnostic reagents: problems and prospects. Curr Opin Chem Biol 1: 5-9.
30. Oshima KH, Higman KH, Arakawa CK, de Kinkelin P, Jørgensen PEV, Meyers TR, Winton JR (1993) Genetic comparison of viral hemorrhagic septicemia virus isolates from North America and Europe. Dis Aquat Org 17: 73-80.
31. Pan W, Craven RC, Qiu Q, Wilson CB, Wills JW, Golovine S, Wang JF (1995) Isolation of virus-neutralizing RNAs from a large pool of random sequences. Proc Natl Acad Sci USA 92: 11509-11513.
32. Phillips JA, Lopez-Colon D, Zhu Z, Xu Y, Tan W (2008) Applications of aptamers in cancer cell biology. Anal Chim Acta 621: 101-108.
33. 165). J Biol Chem 273: 20556-20567.
34. Smail DA (1999) Viral haemorrhagic septicemia. In: Woo PTK, Bruno DW (eds) Fish diseases and disorders, vol 3. Viral, bacterial and fungal infections. CABI, New York, pp 123-147.
35. Stoltenburg R, Reinemann C, Strehlitz B (2007) SELEX-A revolutionary method to generate high-affinity nucleic acid ligands. Biomol Eng 24: 381-403.
36. Suzuki H, Ando T, Umekage S, Tanaka T, Kikuchi Y (2010) Extracellular production of an RNA aptamer by ribonuclease-free marine bacteria harboring engineered plasmids: a proposal for industrial RNA drug production. Appl Environ Microbiol 76: 786-793.
37. Tombelli S, Minunni M, Mascini M (2007) Aptamer-based assays for diagnostics, environmental and food analysis. Biomol Eng 24: 191-200.
38. Torres-Chavolla E, Alocilja EC (2009) Aptasensors for detection of microbial and viral pathogens. Biosens Bioelectron 24: 3175-3182.
39. Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249: 505-510.
40. Zhou J, Swiderski P, Li H, Zhang J, Neff CP, Akkina R, Rossi JJ (2009) Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells. Nucleic Acids Res 37: 3094-3109.