메뉴 건너뛰기




Volumn 11, Issue 6, 2012, Pages 511-517

Functional analysis of synonymous substitutions predicted to affect splicing of the CFTR gene

Author keywords

Ectopic splice sites; Exon skipping; Minigene assay; SplicePort predictions; Synonymous substitution

Indexed keywords

TRANSMEMBRANE CONDUCTANCE REGULATOR;

EID: 84869088202     PISSN: 15691993     EISSN: 18735010     Source Type: Journal    
DOI: 10.1016/j.jcf.2012.04.009     Document Type: Article
Times cited : (16)

References (32)
  • 2
    • 0025241696 scopus 로고
    • The relation between genotype and phenotype in cystic-fibrosis-analysis of the most common mutation (δF508)
    • Kerem E., Corey M., Kerem B.S., Rommens J., Markiewicz D., Levison H., et al. The relation between genotype and phenotype in cystic-fibrosis-analysis of the most common mutation (δF508). N Engl J Med 1990, 323:1517-1522.
    • (1990) N Engl J Med , vol.323 , pp. 1517-1522
    • Kerem, E.1    Corey, M.2    Kerem, B.S.3    Rommens, J.4    Markiewicz, D.5    Levison, H.6
  • 3
    • 0028559511 scopus 로고
    • Conformational maturation of CFTR but not its mutant counterpart (delta F508) occurs in the endoplasmic-reticulum and requires atp
    • Lukacs G.L., Mohamed A., Kartner N., Chang X.B., Riordan J.R., Grinstein S. Conformational maturation of CFTR but not its mutant counterpart (delta F508) occurs in the endoplasmic-reticulum and requires atp. EMBO J 1994, 13:6076-6086.
    • (1994) EMBO J , vol.13 , pp. 6076-6086
    • Lukacs, G.L.1    Mohamed, A.2    Kartner, N.3    Chang, X.B.4    Riordan, J.R.5    Grinstein, S.6
  • 4
    • 84870448743 scopus 로고    scopus 로고
    • Cystic Fibrosis Mutation Database.
    • Cystic Fibrosis Mutation Database. http://www.genet.sickkids.on.ca.
  • 5
    • 0036207384 scopus 로고    scopus 로고
    • Listening to silence and understanding nonsense: exonic mutations that affect splicing
    • Cartegni L., Chew S.L., Krainer A.R. Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat Rev Genet 2002, 3:285-298.
    • (2002) Nat Rev Genet , vol.3 , pp. 285-298
    • Cartegni, L.1    Chew, S.L.2    Krainer, A.R.3
  • 6
    • 37349056702 scopus 로고    scopus 로고
    • Pre-mRNA secondary structures influence exon recognition
    • Hiller M., Zhang Z., Backofen R., Stamm S. Pre-mRNA secondary structures influence exon recognition. PLoS Genet 2007, 3:e204.
    • (2007) PLoS Genet , vol.3
    • Hiller, M.1    Zhang, Z.2    Backofen, R.3    Stamm, S.4
  • 7
    • 0028895417 scopus 로고
    • Exon recognition in vertebrate splicing
    • Berget S.M. Exon recognition in vertebrate splicing. J Biol Chem 1995, 270:2411-2414.
    • (1995) J Biol Chem , vol.270 , pp. 2411-2414
    • Berget, S.M.1
  • 8
    • 0037899998 scopus 로고    scopus 로고
    • New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12
    • Pagani F., Stuani C., Tzetis M., Kanavakis E., Efthymiadou A., Doudounakis S., et al. New type of disease causing mutations: the example of the composite exonic regulatory elements of splicing in CFTR exon 12. Hum Mol Genet 2003, 12:1111-1120.
    • (2003) Hum Mol Genet , vol.12 , pp. 1111-1120
    • Pagani, F.1    Stuani, C.2    Tzetis, M.3    Kanavakis, E.4    Efthymiadou, A.5    Doudounakis, S.6
  • 9
    • 0038712558 scopus 로고    scopus 로고
    • Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9
    • Pagani F., Buratti E., Stuani C., Baralle F.E. Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem 2003, 278:26580-26588.
    • (2003) J Biol Chem , vol.278 , pp. 26580-26588
    • Pagani, F.1    Buratti, E.2    Stuani, C.3    Baralle, F.E.4
  • 10
    • 0042420388 scopus 로고    scopus 로고
    • Characterization of disease-associated mutations affecting an exonic splicing enhancer and two cryptic splice sites in exon 13 of the cystic fibrosis transmembrane conductance regulator gene
    • Aznarez I., Chan E.M., Zielenski J., Blencowe B.J., Tsui L.C. Characterization of disease-associated mutations affecting an exonic splicing enhancer and two cryptic splice sites in exon 13 of the cystic fibrosis transmembrane conductance regulator gene. Hum Mol Genet 2003, 12:2031-2040.
    • (2003) Hum Mol Genet , vol.12 , pp. 2031-2040
    • Aznarez, I.1    Chan, E.M.2    Zielenski, J.3    Blencowe, B.J.4    Tsui, L.C.5
  • 11
    • 77951744075 scopus 로고    scopus 로고
    • A synonymous mutation in the CFTR gene causes aberrant splicing in an Italian patient affected by a mild form of cystic fibrosis
    • Faa V., Coiana A., Incani F., Costantino L., Cao A., Rosatelli M.C. A synonymous mutation in the CFTR gene causes aberrant splicing in an Italian patient affected by a mild form of cystic fibrosis. J Mol Diagn 2010, 12:380-383.
    • (2010) J Mol Diagn , vol.12 , pp. 380-383
    • Faa, V.1    Coiana, A.2    Incani, F.3    Costantino, L.4    Cao, A.5    Rosatelli, M.C.6
  • 12
    • 0035158730 scopus 로고    scopus 로고
    • A mechanism for exon skipping caused by nonsense or missense mutations in brca1 and other genes
    • Liu H.X., Cartegni L., Zhang M.Q., Krainer A.R. A mechanism for exon skipping caused by nonsense or missense mutations in brca1 and other genes. Nat Genet 2001, 27:55-58.
    • (2001) Nat Genet , vol.27 , pp. 55-58
    • Liu, H.X.1    Cartegni, L.2    Zhang, M.Q.3    Krainer, A.R.4
  • 13
    • 0039108539 scopus 로고    scopus 로고
    • Splicing defects in the ataxia-telangiectasia gene, atm: underlying mutations and consequences
    • Teraoka S.N., Telatar M., Becker-Catania S., Liang T., Onengut S., Tolun A., et al. Splicing defects in the ataxia-telangiectasia gene, atm: underlying mutations and consequences. Am J Hum Genet 1999, 64:1617-1631.
    • (1999) Am J Hum Genet , vol.64 , pp. 1617-1631
    • Teraoka, S.N.1    Telatar, M.2    Becker-Catania, S.3    Liang, T.4    Onengut, S.5    Tolun, A.6
  • 14
    • 18144386947 scopus 로고    scopus 로고
    • Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution
    • Pagani F., Raponi M., Baralle F.E. Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution. Proc Natl Acad Sci U S A 2005, 102:6368-6372.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 6368-6372
    • Pagani, F.1    Raponi, M.2    Baralle, F.E.3
  • 15
    • 77949480756 scopus 로고    scopus 로고
    • Genomic features defining exonic variants that modulate splicing
    • Woolfe A., Mullikin J.C., Elnitski L. Genomic features defining exonic variants that modulate splicing. Genome Biol 2010, 11:R20.
    • (2010) Genome Biol , vol.11
    • Woolfe, A.1    Mullikin, J.C.2    Elnitski, L.3
  • 17
    • 79955956183 scopus 로고    scopus 로고
    • Splicing defects in the cftr gene: minigene analysis of two mutations, 1811+1g>c and 1898+3a>g
    • Dujardin G., Commandeur D., Le Jossic-Corcos C., Ferec C., Corcos L. Splicing defects in the cftr gene: minigene analysis of two mutations, 1811+1g>c and 1898+3a>g. J Cyst Fibros 2011, 10:212-216.
    • (2011) J Cyst Fibros , vol.10 , pp. 212-216
    • Dujardin, G.1    Commandeur, D.2    Le Jossic-Corcos, C.3    Ferec, C.4    Corcos, L.5
  • 18
    • 2442441507 scopus 로고    scopus 로고
    • Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
    • Yeo G., Burge C.B. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. J Comput Biol 2004, 11:377-394.
    • (2004) J Comput Biol , vol.11 , pp. 377-394
    • Yeo, G.1    Burge, C.B.2
  • 19
    • 84870421634 scopus 로고    scopus 로고
    • NL#54.
    • NL#54. http://www.Genet.Sickkids.On.Ca/resource/nl/CFnewslet.54.html.
  • 20
    • 84870450108 scopus 로고    scopus 로고
    • NL#45.
    • NL#45. http://www.Genet.Sickkids.On.Ca/resource/nl/CFnewslet.45.html.
  • 21
    • 0035020939 scopus 로고    scopus 로고
    • Complete and rapid scanning of the cystic fibrosis transmembrane conductance regulator (CFTR) gene by denaturing high-performance liquid chromatography (d-hplc): major implications for genetic counselling
    • Le Marechal C., Audrezet M.P., Quere I., Raguenes O., Langonne S., Ferec C. Complete and rapid scanning of the cystic fibrosis transmembrane conductance regulator (CFTR) gene by denaturing high-performance liquid chromatography (d-hplc): major implications for genetic counselling. Hum Genet 2001, 108:290-298.
    • (2001) Hum Genet , vol.108 , pp. 290-298
    • Le Marechal, C.1    Audrezet, M.P.2    Quere, I.3    Raguenes, O.4    Langonne, S.5    Ferec, C.6
  • 22
    • 84870397287 scopus 로고    scopus 로고
    • NL#40.
    • NL#40. http://www.Genet.Sickkids.On.Ca/resource/nl/CFnewslet.40.html.
  • 23
    • 0027234275 scopus 로고
    • Analysis of the 27 exons and flanking regions of the cystic fibrosis gene: 40 different mutations account for 91.2% of the mutant alleles in southern France
    • Claustres M., Laussel M., Desgeorges M., Giansily M., Culard J.F., Razakatsara G., et al. Analysis of the 27 exons and flanking regions of the cystic fibrosis gene: 40 different mutations account for 91.2% of the mutant alleles in southern France. Hum Mol Genet 1993, 2:1209-1213.
    • (1993) Hum Mol Genet , vol.2 , pp. 1209-1213
    • Claustres, M.1    Laussel, M.2    Desgeorges, M.3    Giansily, M.4    Culard, J.F.5    Razakatsara, G.6
  • 24
    • 55249116242 scopus 로고    scopus 로고
    • Rapid generation of splicing reporters with pspliceexpress
    • Kishore S., Khanna A., Stamm S. Rapid generation of splicing reporters with pspliceexpress. Gene 2008, 427:104-110.
    • (2008) Gene , vol.427 , pp. 104-110
    • Kishore, S.1    Khanna, A.2    Stamm, S.3
  • 25
    • 0036226603 scopus 로고    scopus 로고
    • Blat-the blast-like alignment tool
    • Kent W.J. Blat-the blast-like alignment tool. Genome Res 2002, 12:656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 27
    • 0032605197 scopus 로고    scopus 로고
    • Spectrum of CFTR mutations in the middle north of Spain and identification of a novel mutation (1341g->a). Mutation in brief no. 252
    • (Online)
    • Telleria J.J., Alonso M.J., Calvo C., Alonso M., Blanco A. Spectrum of CFTR mutations in the middle north of Spain and identification of a novel mutation (1341g->a). Mutation in brief no. 252. Hum Mutat 1999, 14:89. (Online).
    • (1999) Hum Mutat , vol.14 , pp. 89
    • Telleria, J.J.1    Alonso, M.J.2    Calvo, C.3    Alonso, M.4    Blanco, A.5
  • 31
    • 8144225362 scopus 로고    scopus 로고
    • Variation in sequence and organization of splicing regulatory elements in vertebrate genes
    • Yeo G., Hoon S., Venkatesh B., Burge C.B. Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci U S A 2004, 101:15700-15705.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 15700-15705
    • Yeo, G.1    Hoon, S.2    Venkatesh, B.3    Burge, C.B.4
  • 32
    • 0038486897 scopus 로고    scopus 로고
    • Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
    • Sorek R., Ast G. Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res 2003, 13:1631-1637.
    • (2003) Genome Res , vol.13 , pp. 1631-1637
    • Sorek, R.1    Ast, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.