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Volumn 13, Issue 1, 2012, Pages

High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL GENETICS; ARTICLE; AUTOSOME; CHROMOSOME MAP; CHROMOSOME MARKER; CHROMOSOME SIZE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC LINKAGE; GENETIC RECOMBINATION; GENOME ANALYSIS; GENOTYPE; HUMAN GENOME; PREDICTION; RADIATION HYBRID MAPPING; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84868691285     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-585     Document Type: Article
Times cited : (14)

References (35)
  • 1
    • 70350714429 scopus 로고    scopus 로고
    • Every genome sequence needs a good map
    • 10.1101/gr.094557.109, 2775595, 19596977
    • Lewin HA, Larkin DM, Pontius J, O'Brien SJ. Every genome sequence needs a good map. Genome Res 2009, 19(11):1925-8. [http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id= 19596977], 10.1101/gr.094557.109, 2775595, 19596977.
    • (2009) Genome Res , vol.19 , Issue.11 , pp. 1925-1928
    • Lewin, H.A.1    Larkin, D.M.2    Pontius, J.3    O'Brien, S.J.4
  • 2
    • 20444423961 scopus 로고    scopus 로고
    • Piggy-bacing the human genome: ii. a high-resolution, physically anchored, comparative map of the porcine autosomes
    • 10.1016/j.ygeno.2005.04.010, 16246521
    • Meyers SN, Rogatcheva MB, Larkin DM, Yerle M, Milan D, Hawken RJ, Schook LB, Beever JE. Piggy-bacing the human genome: ii. a high-resolution, physically anchored, comparative map of the porcine autosomes. Genomics 2005, 86(6):739-752. [http://www.sciencedirect.com/science/article/pii/S0888754305001175], 10.1016/j.ygeno.2005.04.010, 16246521.
    • (2005) Genomics , vol.86 , Issue.6 , pp. 739-752
    • Meyers, S.N.1    Rogatcheva, M.B.2    Larkin, D.M.3    Yerle, M.4    Milan, D.5    Hawken, R.J.6    Schook, L.B.7    Beever, J.E.8
  • 9
    • 34548297174 scopus 로고    scopus 로고
    • A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly
    • 10.1186/1471-2164-8-254, 1959194, 17655763
    • Marques E, de Givry S, Stothard P, Murdoch B, Wang Z, Womack J, Moore SS. A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC genomics 2007, 8:254. [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1959194{set minus}&tool=pmcentrez{set minus}&rendertype=abstract], 10.1186/1471-2164-8-254, 1959194, 17655763.
    • (2007) BMC genomics , vol.8 , pp. 254
    • Marques, E.1    de Givry, S.2    Stothard, P.3    Murdoch, B.4    Wang, Z.5    Womack, J.6    Moore, S.S.7
  • 10
    • 35948973196 scopus 로고    scopus 로고
    • High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly
    • 10.1186/1471-2164-8-310, 2064936, 17784962
    • Prasad A, Schiex T, McKay S, Murdoch B, Wang Z, Womack JE, Stothard P, Moore SS. High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly. BMC genomics 2007, 8:310. [http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2064936{set minus}&tool=pmcentrez{set minus}&rendertype=abstract], 10.1186/1471-2164-8-310, 2064936, 17784962.
    • (2007) BMC genomics , vol.8 , pp. 310
    • Prasad, A.1    Schiex, T.2    McKay, S.3    Murdoch, B.4    Wang, Z.5    Womack, J.E.6    Stothard, P.7    Moore, S.S.8
  • 13
    • 0036044147 scopus 로고    scopus 로고
    • Generation and characterization of a 12,000-rad radiation hybrid panel for fine mapping in pig
    • 10.1159/000066616, 12438716
    • Yerle M, Pinton P, Delcros C, Arnal N, Milan D, Robic A. Generation and characterization of a 12,000-rad radiation hybrid panel for fine mapping in pig. Cytogenet Genome Res 2002, 97:219-228. 10.1159/000066616, 12438716.
    • (2002) Cytogenet Genome Res , vol.97 , pp. 219-228
    • Yerle, M.1    Pinton, P.2    Delcros, C.3    Arnal, N.4    Milan, D.5    Robic, A.6
  • 17
    • 33644878509 scopus 로고    scopus 로고
    • Mapping of 443 porcine EST improves the comparative maps for SSC1 and SSC7 with the human genome
    • 10.1111/j.1365-2052.2005.01328.x, 16167980
    • Demeure O, Pomp D, Milan D, Rothschild MF, Tuggle CK. Mapping of 443 porcine EST improves the comparative maps for SSC1 and SSC7 with the human genome. Animal genet 2005, 36:381-389. 10.1111/j.1365-2052.2005.01328.x, 16167980.
    • (2005) Animal genet , vol.36 , pp. 381-389
    • Demeure, O.1    Pomp, D.2    Milan, D.3    Rothschild, M.F.4    Tuggle, C.K.5
  • 18
    • 33644540184 scopus 로고    scopus 로고
    • A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: identification of synteny breakpoints
    • 10.1016/j.ygeno.2005.07.002, 16111857
    • Lahbib-Mansais Y, Karlskov-Mortensen P, Mompart F, Milan D, Jørgensen CB, Cirera S, Gorodkin J, Faraut T, Yerle M, Fredholm M. A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: identification of synteny breakpoints. Genomics 2005, 86(4):405-13. 10.1016/j.ygeno.2005.07.002, 16111857.
    • (2005) Genomics , vol.86 , Issue.4 , pp. 405-413
    • Lahbib-Mansais, Y.1    Karlskov-Mortensen, P.2    Mompart, F.3    Milan, D.4    Jørgensen, C.B.5    Cirera, S.6    Gorodkin, J.7    Faraut, T.8    Yerle, M.9    Fredholm, M.10
  • 20
    • 33748698415 scopus 로고    scopus 로고
    • Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes
    • 10.1016/j.ygeno.2006.04.010, 16765019
    • Lahbib-Mansais Y, Mompart F, Milan D, Leroux S, Faraut T, Delcros C, Yerle M. Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes. Genomics 2006, 88(4):504-12. 10.1016/j.ygeno.2006.04.010, 16765019.
    • (2006) Genomics , vol.88 , Issue.4 , pp. 504-512
    • Lahbib-Mansais, Y.1    Mompart, F.2    Milan, D.3    Leroux, S.4    Faraut, T.5    Delcros, C.6    Yerle, M.7
  • 21
    • 33645349025 scopus 로고    scopus 로고
    • High resolution physical map of porcine chromosome 7 QTL, region and comparative mapping of this region among vertebrate genomes
    • 10.1186/1471-2164-7-13, 1420295, 16433907
    • Demars J, Riquet J, Feve K, Gautier M, Morisson M, Demeure O, Renard C, Chardon P, Milan D. High resolution physical map of porcine chromosome 7 QTL, region and comparative mapping of this region among vertebrate genomes. BMC Genomics 2006, 7:13. 10.1186/1471-2164-7-13, 1420295, 16433907.
    • (2006) BMC Genomics , vol.7 , pp. 13
    • Demars, J.1    Riquet, J.2    Feve, K.3    Gautier, M.4    Morisson, M.5    Demeure, O.6    Renard, C.7    Chardon, P.8    Milan, D.9
  • 26
    • 79951764561 scopus 로고    scopus 로고
    • Statistical confidence measures for genome maps: application to the validation of genome assemblies
    • 10.1093/bioinformatics/btq598, 21076149
    • Servin B, de G, Faraut T. Statistical confidence measures for genome maps: application to the validation of genome assemblies. Bioinformatics 2010, 26(24):3035-3042. [http://bioinformatics.oxfordjournals.org/content/26/24/3035.abstract], 10.1093/bioinformatics/btq598, 21076149.
    • (2010) Bioinformatics , vol.26 , Issue.24 , pp. 3035-3042
    • Servin, B.1    de, G.2    Faraut, T.3
  • 27
    • 39449116116 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans
    • 10.1126/science.1151851, 18239090
    • Coop G, Wen X, Ober C, Pritchard JK, Przeworsk M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science 2008, 319(5868):1395-8. 10.1126/science.1151851, 18239090.
    • (2008) Science , vol.319 , Issue.5868 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworsk, M.5
  • 30
    • 84865865592 scopus 로고    scopus 로고
    • Copy number variation in the genomes of domestic animals
    • 10.1111/j.1365-2052.2012.02317.x, 22497594, Vidal O
    • Clop A, Amills M, Vidal O Copy number variation in the genomes of domestic animals. Anim genet 2012, 43(5):503-517. [http://www.ncbi.nlm.nih.gov/pubmed/22497594], 10.1111/j.1365-2052.2012.02317.x, 22497594, Vidal O.
    • (2012) Anim genet , vol.43 , Issue.5 , pp. 503-517
    • Clop, A.1    Amills, M.2
  • 31
    • 57149100162 scopus 로고    scopus 로고
    • Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes
    • 10.1101/gr.082487.108, 2593575, 18981267
    • Van Laere AS, Coppieters W, Georges M. Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes. Genome Res 2008, 18(12):1884-95. [http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id= 18981267], 10.1101/gr.082487.108, 2593575, 18981267.
    • (2008) Genome Res , vol.18 , Issue.12 , pp. 1884-1895
    • Van Laere, A.S.1    Coppieters, W.2    Georges, M.3
  • 32
    • 0029760561 scopus 로고    scopus 로고
    • Selected locus and multiple panel models for radiation hybrid mapping
    • 1914929, 8751873
    • Lunetta KL, Boehnke M, Lange K, Cox DR. Selected locus and multiple panel models for radiation hybrid mapping. Am J Hum Genet 1996, 59(3):717-25. [http: //eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=8751873], 1914929, 8751873.
    • (1996) Am J Hum Genet , vol.59 , Issue.3 , pp. 717-725
    • Lunetta, K.L.1    Boehnke, M.2    Lange, K.3    Cox, D.R.4
  • 33
    • 17444404610 scopus 로고    scopus 로고
    • CARTHAGENE: multipopulation integrated genetic and radiated hybrid mapping
    • 10.1093/bioinformatics/bti222, 15598829
    • de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T. CARTHAGENE: multipopulation integrated genetic and radiated hybrid mapping. Bioinformatics 2005, 21(8):1703-1704. 10.1093/bioinformatics/bti222, 15598829.
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1703-1704
    • de Givry, S.1    Bouchez, M.2    Chabrier, P.3    Milan, D.4    Schiex, T.5
  • 34
    • 0025802074 scopus 로고
    • A detailed multipoint map of human chromosome 4 provides evidence for linkage heterogeneity and position-specific recombination rates
    • 1683054, 1673289
    • Buetow KH, Shiang R, Yang P, Nakamura Y, Lathrop GM, White R, Wasmuth JJ, Wood S, Berdahl LD, Leysens NJ, et al A detailed multipoint map of human chromosome 4 provides evidence for linkage heterogeneity and position-specific recombination rates. Am J Hum Genet 1991, 48(5):911-25. [http: //eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=1673289], 1683054, 1673289, et. al.
    • (1991) Am J Hum Genet , vol.48 , Issue.5 , pp. 911-925
    • Buetow, K.H.1    Shiang, R.2    Yang, P.3    Nakamura, Y.4    Lathrop, G.M.5    White, R.6    Wasmuth, J.J.7    Wood, S.8    Berdahl, L.D.9    Leysens, N.J.10
  • 35
    • 0027503945 scopus 로고
    • Ordering genes: controlling the decision-error probabilities
    • 1682055, 8488844
    • Rogatko A, Zacks S. Ordering genes: controlling the decision-error probabilities. Am J Hum Genet 1993, 52(5):947-57. [http: //eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?cmd=prlinks&dbfrom=pubmed&retmode=ref&id=8488844], 1682055, 8488844.
    • (1993) Am J Hum Genet , vol.52 , Issue.5 , pp. 947-957
    • Rogatko, A.1    Zacks, S.2


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