Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes

Genomics

Volumn 88, Issue 4, 2006, Pages 504-512

  Lahbib Mansais, Yvette ^a   Mompart, Florence ^a   Milan, Denis ^a   Leroux, Sophie ^a   Faraut, Thomas ^a   Delcros, Chantal ^a   Yerle, Martine ^a  

^a CEMAGREF   (France)

Author keywords

BAC; Comparative mapping; FISH; Human; Pig; RH map; SSC16; SSC2; Synteny breakpoint

Indexed keywords

ARTICLE; CHROMOSOME 16; CHROMOSOME 2; CHROMOSOME 2Q; COMPARATIVE GENE MAPPING; EVOLUTIONARY HOMOLOGY; EXPRESSED SEQUENCE TAG; FLUORESCENCE IN SITU HYBRIDIZATION; HUMAN; HUMAN CHROMOSOME; NONHUMAN; PRIORITY JOURNAL; SPECIES; SYNTENY;

SUIDAE; SUS SCROFA;

EID: 33748698415     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2006.04.010     Document Type: Article

References (47)

1. Jeon J.T., et al. A paternally expressed QTL affecting skeletal and cardiac muscle mass in pigs maps to the IGF2 locus. Nat. Genet. 21 (1999) 157-158
2. Nezer C., et al. An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nat. Genet. 21 (1999) 155-156
3. de Koning D.J., et al. Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa). Genetics 152 (1999) 1679-1690
4. Ratting A.P., et al. Fine mapping and imprinting analysis for fatness trait QTLs in pigs. Mamm. Genome 11 (2000) 656-661
5. Van Laere A.S., et al. A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Nature 23 (2003) 832-836
6. Jungerius B.J., et al. The IGF2-intron 3-G3072A substitution explains a major imprinted QTL effect on backfat thickness in a Meishan × European White pig intercross. Genet. Res. 84 (2004) 95-101
7. Wada Y., et al. Quantitative trait loci (QTL) analysis in a Meishan × Gottingen cross population. Anim. Genet. 31 (2000) 376-384
8. Casas-Carrillo E., Prill-Adams A., Price S.G., Clutter A.C., and Kirkpatrick B.W. Mapping genomic regions associated with growth rate in pigs. J. Anim. Sci. 75 (1997) 2047-2053
9. Malek M., Dekkers J.C.M., Lee H.K., Baas T.J., and Rothschild M.F. A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig: I. Growth and body composition. Mamm. Genome 12 (2001) 630-636
10. Malek M., et al. A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig: II. Meat and muscle composition. Mamm. Genome 12 (2001) 637-645
11. Bidanel J.P., et al. Detection of quantitative trait loci for growth and fatness in pigs. Genet. Sel. Evol. 33 (2001) 289-309
12. Lee S.S., et al. Linkage and QTL mapping for Sus scrofa chromosome 2. J. Anim. Breed Genet. 120 Suppl 1 (2003) 11-19
13. Houston R.D., Haley C.S., Archibald A., and Rance K.A. A QTL affecting daily feed intake maps to chromosome 2 in pigs. Mamm. Genome 16 (2005) 464-470
14. Nii M., et al. Quantitative trait loci mapping for meat quality and muscle fiber traits in a Japanese wild boar × Large White intercross. J. Anim. Sci. 83 (2005) 308-315
15. Vidal O., et al. Identification of carcass and meat quality quantitative trait loci in a Landrace pig population selected for growth and leanness. J. Anim. Sci. 83 (2005) 293-300
16. Stearns T.M., et al. Evaluation of approaches to detect quantitative trait loci for growth, carcass, and meat quality on swine chromosomes 2, 16, 13, and 18: I. Univariate outbred F2 and sib-pair analyses. J. Anim. Sci. 83 (2005) 1481-1493
17. Rettenberger G., et al. Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics 26 (1995) 372-378
18. Goureau A., et al. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36 (1996) 252-262
19. Pinton P., Schidler L., Cribiu E., Gellin J., and Yerle M. Localisation of 113 anchor loci in pigs: improvement of the comparative map for humans, pig and goats. Mamm. Genome 11 (2000) 306-315
20. Rink A., Santschi E.M., and Beattie C.W. Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection. Mamm. Genome 13 (2002) 198-205
21. Ratting A.P., Faivre M., Jungerius B.J., Groenen M.A.M., and Harlizius B. A high- resolution comparative RH map of porcine chromosome (SSC) 2. Mamm. Genome 12 (2001) 366-370
22. Ratting A.P., Jungerius B.J., Faivre M., Chardon P., and Harlizius B. Improving the comparative map of SSC2p-q13 by sample sequencing of BAC clones. Anim. Genet. 32 (2001) 274-280
23. Meyers S.N., et al. Piggy-BACing the human genome: II. A high-resolution, physically-anchored, comparative map of the porcine autosomes. Genomics 86 (2005) 739-752
24. Muller C., Denis M., Gentzbittel L., and Faraut T. The ICCARE Web server: an attempt to merge sequence and mapping information for plant and animal species. Nucleic Acids Res. 1 (Web server issue) (2004) W429-W434
25. Yerle M., et al. Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet. Cell Genet. 82 (1998) 182-188
26. Hawken R.J., et al. A first-generation porcine whole-genome radiation hybrid map. Mamm. Genome 10 (1999) 824-830
27. Jiang Z., Priat C., and Galibert F. Traced orthologous amplified sequence tags (TOASTs) and mammalian comparative maps. Mamm. Genome 9 (1998) 577-587
28. Lahbib-Mansais Y., et al. A successful strategy for comparative mapping with human ESTs: 65 new regional assignments in the pig. Mamm. Genome 10 (1999) 145-153
29. Lahbib-Mansais Y., et al. Comparative mapping between humans and pigs: localization of 58 anchorage markers (TOASTs) by use of porcine somatic cell and radiation hybrid panels. Mamm. Genome 11 (2000) 1098-1106
30. Milan D., et al. IMpRH server: an RH mapping server available on the Web. Bioinform. Appl. Note 16 (2000) 558-559
31. Schiex T., and Gaspin C. CARTHAGENE: constructing and joining maximum likelihood genetic maps. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5 (1997) 258-267
32. de Givry S., Bouchez M., Chabrier P., Milan D., and Schiex T. CARTHA GENE: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21 (2005) 1703-1704
33. Yerle M., et al. A somatic cell hybrid panel for pig regional gene mapping characterized by molecular cytogenetics. Cytogenet. Cell Genet. 73 (1996) 194-202
34. Rogel-Gaillard C., Bourgeaux N., Billault A., Vaiman M., and Chardon P. Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet. Cell Genet. 85 (1999) 205-211
35. Genet C., et al. In the QTL region surrounding porcine MHC, gene order is conserved with human genome. Mamm. Genome 12 (2001) 246-249
36. Yerle M. Generation and characterization of a 12,000 rads radiation hybrid panel for fine mapping in pig. Cytogenet. Genome Res. 97 (2002) 219-228
37. Demeure O., et al. Rearranged gene order between pig and human in a QTL region on SSC17. Mamm. Genome 14 (2003) 71-80
38. Murphy W.J., et al. Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps. Science 309 (2005) 613-617
39. Pletcher M.T., et al. Chromosome evolution: the junction of mammalian chromosomes in the formation of mouse chromosome 10. Genome Res. 10 (2000) 1463-1467
40. Dehal P., et al. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. Science 293 (2001) 104-111
41. Armengol L., Pujana M.A., Cheung J., Scherer S.W., and Estivill X. Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements. Hum. Mol. Genet. 12 (2003) 2201-2208
42. Bailey J.A., Baertsch R., Kent W.J., Haussler D., and Eichler E.E. Hotspots of mammalian chromosomal evolution. Genome Biol. 5 (2004) R23
43. Ruiz-Herrera A., et al. Evolutionary breakpoints are co-localized with fragile sites and intrachromosomal telomeric sequences in primates. Cytogenet. Genome Res. 108 (2005) 234-247
44. Schook L.B., et al. Swine Genome Sequencing Consortium (SGSC): a strategic roadmap for sequencing the pig genome. Comp. Funct. Genom. 6 (2005) 251-255
45. Chevalet C., Gouzy J., and SanCristobal-Gaudy M. Regional assignment of genetic markers using a somatic cell hybrid panel: a WWW interactive program available for the pig genome. Comput. Appl. Biosci. 13 (1997) 69-73
46. Lahbib-Mansais Y., et al. A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: identification of synteny breakpoints. Genomics 86 (2005) 405-413
47. Yerle M., Goureau A., Gellin J., Le Tissier P., and Moran C. Rapid mapping of cosmid clones on pig chromosomes by fluorescence in situ hybridization. Mamm. Genome 5 (1994) 34-37