Birds and Viruses at a Crossroad - Surveillance of Influenza A Virus in Portuguese Waterfowl

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Tolf, Conny ^a   Bengtsson, Daniel ^a   Rodrigues, David ^b   Latorre Margalef, Neus ^a   Wille, Michelle ^a   Figueiredo, Maria Ester ^b   Jankowska Hjortaas, Monika ^c   Germundsson, Anna ^c   Duby, Pierre Yves ^b   Lebarbenchon, Camille ^d   Gauthier Clerc, Michel ^e   Olsen, Björn ^f   Waldenström, Jonas ^a  

^a LINNAEUS UNIVERSITY   (Sweden)

^b INSTITUTO POLITÉCNICO DE COIMBRA   (Portugal)

^c NORWEGIAN VETERINARY INSTITUTE   (Norway)

^d UNIVERSITÉ DE LA RÉUNION   (France)

^e STATION BIOLOGIQUE DE LA TOUR DU VALAT   (France)

^f UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS HEMAGGLUTININ; VIRUS SIALIDASE;

AFRICA; AMINO ACID SEQUENCE; ANAS PLATYRHYNCHOS; ARTICLE; BREEDING; DISEASE SURVEILLANCE; DUCKS AND GEESE; GEOGRAPHIC DISTRIBUTION; INFLUENZA VIRUS A; INFLUENZA VIRUS A H10N7; INFLUENZA VIRUS A H11N3; INFLUENZA VIRUS A H9N2; MALLARD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POPULATION MIGRATION; PORTUGAL; PORTUGUESE WATERFOWL; PREVALENCE; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; UNINDEXED SEQUENCE; VIRUS ISOLATION; VIRUS STRAIN; VIRUS TRANSMISSION; WETLAND;

ANIMAL MIGRATION; ANIMALS; ANIMALS, WILD; BIRDS; FEMALE; INFLUENZA A VIRUS, H10N7 SUBTYPE; INFLUENZA A VIRUS, H9N2 SUBTYPE; INFLUENZA IN BIRDS; PHYLOGENY; PORTUGAL;

ANAS PLATYRHYNCHOS; ANATIDAE; AVES; INFLUENZA A VIRUS;

EID: 84868686374     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049002     Document Type: Article

References (58)

1. Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus AD, et al. (2006) Global patterns of influenza A virus in wild birds. Science 312: 384-388.
2. Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y, (1992) Evolution and ecology of influenza A viruses. Microbiological reviews 56: 152-179.
3. Munster VJ, Baas C, Lexmond P, Waldenstrom J, Wallensten A, et al. (2007) Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS pathogens 3: e61 doi: 10.1371/journal.ppat.0030061.
4. Latorre-Margalef N, Gunnarsson G, Munster VJ, Fouchier RA, Osterhaus AD, et al. (2009) Effects of influenza A virus infection on migrating mallard ducks. Proceedings of the Royal Society B 276: 1029-1036.
5. Pappaioanou M, (2009) Highly pathogenic H5N1 avian influenza virus: cause of the next pandemic? Comparative immunology, microbiology and infectious diseases 32: 287-300.
6. Alexander DJ, Manvell RJ, Irvine R, Londt BZ, Cox B, et al. (2010) Overview of incursions of Asian H5N1 subtype highly pathogenic avian influenza virus into Great Britain, 2005-2008. Avian diseases 54: 194-200.
7. Le Gall-Recule G, Briand FX, Schmitz A, Guionie O, Massin P, et al. (2008) Double introduction of highly pathogenic H5N1 avian influenza virus into France in early 2006. Avian Pathology 37: 15-23.
8. Enserink M, (2006) Avian influenza. H5N1 moves into Africa, European Union, deepening global crisis. Science 311: 932.
9. Kim HR, Lee YJ, Park CK, Oem JK, Lee OS, et al. (2012) Highly pathogenic avian influenza (H5N1) outbreaks in wild birds and poultry, South Korea. Emerging infectious diseases 18: 480-483.
10. Ekong PS, Ducheyne E, Carpenter TE, Owolodun OA, Oladokun AT, et al. (2012) Spatio-temporal epidemiology of highly pathogenic avian influenza (H5N1) outbreaks in Nigeria, 2006-2008. Preventive veterinary medicine 103: 170-177.
11. Brown IH, Banks J, Manvell RJ, Essen SC, Shell W, et al. (2006) Recent epidemiology and ecology of influenza A viruses in avian species in Europe and the Middle East. Developments in biologicals 124: 45-50.
12. Bouscambert-Duchamp M, Lina B, Morfin F, (2009) [Avian influenza in children]. Archives de pediatrie: organe officiel de la Societe francaise de pediatrie 16: S101-S107.
13. Alexander DJ, (2003) Report on avian influenza in the eastern hemisphere during 1997-2000. Developments in biologicals 47: 792-797.
14. Alexander DJ, Brown IH, (2009) History of highly pathogenic avian influenza. Revue scientifique et technique 28: 19-38.
15. Cattoli G, Capua I, (2007) Diagnosing avian influenza in the framework of wildlife surveillance efforts and environmental samples. Journal of Wildlife Diseases 43: S35-S39.
16. Takekawa JY, Prosser DJ, Newman SH, Bin Muzaffar S, Hill NJ, et al. (2010) Victims and vectors: highly pathogenic avian influenza H5N1 and the ecology of wild birds. Avian Biology Research 3: 51-73.
17. Takekawa JY, Newman SH, Xiao X, Prosser DJ, Spragens KA, et al. (2010) Migration of waterfowl in the East Asian flyway and spatial relationship to HPAI H5N1 outbreaks. Avian diseases 54: 466-476.
18. Keawcharoen J, van Riel D, van Amerongen G, Bestebroer T, Beyer WE, et al. (2008) Wild ducks as long-distance vectors of highly pathogenic avian influenza virus (H5N1). Emerging infectious diseases 14: 600-607.
19. Butt AM, Siddique S, Idrees M, Tong Y, (2010) Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population. Virology journal 7: 319.
20. Alexander DJ, (2000) A review of avian influenza in different bird species. Veterinary microbiology 74: 3-13.
21. Suss J, Schafer J, Sinnecker H, Webster RG, (1994) Influenza virus subtypes in aquatic birds of eastern Germany. Archives of virology 135: 101-114.
22. Wallensten A, Munster VJ, Latorre-Margalef N, Brytting M, Elmberg J, et al. (2007) Surveillance of influenza A virus in migratory waterfowl in northern Europe. Emerging infectious diseases 13: 404-411.
23. De Marco MA, Foni E, Campitelli L, Raffini E, Delogu M, et al. (2003) Long-term monitoring for avian influenza viruses in wild bird species in Italy. Veterinary Research Communications 27: 107-114.
24. Fouchier RA, Olsen B, Bestebroer TM, Herfst S, van der Kemp L, et al. (2003) Influenza A virus surveillance in wild birds in northern Europe in 1999 and 2000. Avian diseases 47: 857-860.
25. Krauss S, Walker D, Pryor SP, Niles L, Chenghong L, et al. (2004) Influenza A viruses of migrating wild aquatic birds in North America. Vector borne and zoonotic diseases 4: 177-189.
26. Hanson BA, Stallknecht DE, Swayne DE, Lewis LA, Senne DA, (2003) Avian influenza viruses in Minnesota ducks during 1998-2000. Avian diseases 47: 867-871.
27. Lebarbenchon C, van der Werf S, Thomas F, Aubin JT, Azebi S, et al. (2007) Absence of detection of highly pathogenic H5N1 in migratory waterfowl in southern France in 2005-2006. Infection, Genetics and Evolution 7: 604-608.
28. De Marco MA, Foni GE, Campitelli L, Raffini E, Di Trani L, et al. (2003) Circulation of influenza viruses in wild waterfowl wintering in Italy during the 1993-99 period: evidence of virus shedding and seroconversion in wild ducks. Avian diseases 47: 861-866.
29. Arenas A, Carranza J, Perea A, Miranda A, Maldonado A, et al. (1990) Type A influenza viruses in birds in southern Spain: serological survey by enzyme-linked immunosorbent assay and haemagglutination inhibition tests. Avian Pathology 19: 539-546.
30. Lebarbenchon C, Chang CM, Grandhomme V, Dietrich M, Kayser Y, et al. (2010) Avian influenza circulation in the Camargue (south of France) during the 2006-07 season. Avian diseases 54: 446-449.
31. Terregino C, De Nardi R, Guberti V, Scremin M, Raffini E, et al. (2007) Active surveillance for avian influenza viruses in wild birds and backyard flocks in northern Italy during 2004 to 2006. Avian Pathology 36: 337-344.
32. Busquets N, Alba A, Napp S, Sanchez A, Serrano E, et al. (2010) Influenza A virus subtypes in wild birds in north-eastern Spain (Catalonia). Virus research 149: 10-18.
33. Lebarbenchon C, Chang CM, Gauthier-Clerc M, Thomas F, Renaud F, et al. (2008) H9N2 avian influenza virus in a Mediterranean gull. Journal of Molecular and Genetic Medicine 3: 121-123.
34. Lebarbenchon C, Albespy F, Brochet AL, Grandhomme V, Renaud F, et al. (2009) Spread of avian influenza viruses by common teal (Anas crecca) in Europe. PloS one 4: e7289 doi:7210.1371/journal.pone.0007289.
35. Germundsson A, Madslien KI, Hjortaas MJ, Handeland K, Jonassen CM, (2010) Prevalence and subtypes of influenza A viruses in wild waterfowl in Norway 2006-2007. Acta veterinaria Scandinavica 52: 28 doi: 10.1186/1751-0147-1152-1128.
36. Rodrigues DF, A (1997) Loss and change of habitat and possible effects on mallard populations of Mondego and Vouga river basins. In: J. D. Goss Custard RRAL, editor. Effect of Habitat Loss and Change on Waterbirds. London: The Stationery Office. 127-130.
37. Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, et al. (2002) Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. Journal of clinical microbiology 40: 3256-3260.
38. WHO (2002) WHO manual on animal influenza diagnosis and surveillance. WHO/CDS/CSR/NCS/20025: 1-99.
39. Phipps LP, Essen SC, Brown IH, (2004) Genetic subtyping of influenza A viruses using RT-PCR with a single set of primers based on conserved sequences within the HA2 coding region. Journal of virological methods 122: 119-122.
40. Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR, (2001) Universal primer set for the full-length amplification of all influenza A viruses. Archives of virology 146: 2275-2289.
41. Orozovic G, Latorre-Margalef N, Wahlgren J, Muradrasoli S, Olsen B, (2010) Degenerate primers for PCR amplification and sequencing of the avian influenza A neuraminidase gene. Journal of virological methods 170: 94-98.
42. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, et al. (2010) Geneious v. 5.3. Available: http://www.geneious.com. Accessed 2012 Oct 15.
43. Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research 33: 511-518.
44. Posada D, (2008) jModelTest: phylogenetic model averaging. Molecular biology and evolution 25: 1253-1256.
45. Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
46. Altizer S, Bartel R, Han BA, (2011) Animal migration and infectious disease risk. Science 331: 296-302.
47. Cramp SP, Christopher M (1994) Handbook of the Birds of Europe, the Middle East, and North Africa: The Birds of the Western Palearctic: Oxford University Press. 772 p.
48. Hinshaw VS, Wood JM, Webster RG, Deibel R, Turner B, (1985) Circulation of influenza viruses and paramyxoviruses in waterfowl originating from two different areas of North America. Bulletin of the World Health Organization 63: 711-719.
49. Stallknecht DE, Shane SM, (1988) Host range of avian influenza virus in free-living birds. Veterinary Research Communications 12: 125-141.
50. Henriques AM, Fagulha T, Barros SC, Ramos F, Duarte M, et al. (2011) Multiyear surveillance of influenza A virus in wild birds in Portugal. Avian Pathology 40: 597-602.
51. Otsuki K, Kariya H, Matsuo K, Sugiyama S, Hoshina K, et al. (1987) Isolation of influenza A viruses from migratory waterfowls in San-In District Japan in the winter of 1984-1985. The Japanese Journal of Veterinary Science 49: 721-723.
52. Stallknecht DE, Shane SM, Zwank PJ, Senne DA, Kearney MT, (1990) Avian influenza viruses from migratory and resident ducks of coastal Louisiana. Avian diseases 34: 398-405.
53. Abolnik C, Gerdes GH, Sinclair M, Ganzevoort BW, Kitching JP, et al. (2010) Phylogenetic analysis of influenza A viruses (H6N8, H1N8, H4N2, H9N2, H10N7) isolated from wild birds, ducks, and ostriches in South Africa from 2007 to 2009. Avian diseases 54: 313-322.
54. Simulundu E, Ishii A, Igarashi M, Mweene AS, Suzuki Y, et al. (2011) Characterization of influenza A viruses isolated from wild waterfowl in Zambia. Journal of General Virology 92: 1416-1427.
55. Guan Y, Shortridge KF, Krauss S, Webster RG, (1999) Molecular characterization of H9N2 influenza viruses: were they the donors of the "internal" genes of H5N1 viruses in Hong Kong? Proceedings of the National Academy of Sciences of the United States of America 96: 9363-9367.
56. Peiris M, Yuen KY, Leung CW, Chan KH, Ip PL, et al. (1999) Human infection with influenza H9N2. Lancet 354: 916-917.
57. Butt KM, Smith GJ, Chen H, Zhang LJ, Leung YH, et al. (2005) Human infection with an avian H9N2 influenza A virus in Hong Kong in 2003. Journal of clinical microbiology 43: 5760-5767.
58. Bennett G, Wit P (2001) The Development and Application of Ecological Networks A Review of Proposals, Plans and Programmes. 137 p.