Characterization of influenza A viruses isolated from wild waterfowl in Zambia

Journal of General Virology

Volumn 92, Issue 6, 2011, Pages 1416-1427

  Simulundu, Edgar ^a   Ishii, Akihiro ^a,b   Igarashi, Manabu ^a   Mweene, Aaron S ^b   Suzuki, Yuka ^a,b   Hang'ombe, Bernard M ^b   Namangala, Boniface ^b   Moonga, Ladslav ^b   Manzoor, Rashid ^a   Ito, Kimihito ^a   Nakamura, Ichiro ^a,b   Sawa, Hirofumi ^a,b   Sugimoto, Chihiro ^a,b   Kida, Hiroshi ^a,c,d   Simukonda, Chuma ^a   Chansa, Wilbroad ^a   Chulu, Jack ^a   Takada, Ayato ^a,b  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF ZAMBIA   (Zambia)

^c HOKKAIDO UNIVERSITY   (Japan)

^d NONE

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BIRD; DUCK; GOOSE; INFLUENZA A; INFLUENZA VIRUS A; INFLUENZA VIRUS A H11N9; INFLUENZA VIRUS A H3N8; INFLUENZA VIRUS A H4N6; INFLUENZA VIRUS A H6N2; INFLUENZA VIRUS A H9N1; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; VIRUS GENOME; VIRUS INFECTION; VIRUS ISOLATION; VIRUS REPLICATION; WILDLIFE; ZAMBIA;

ANIMALS; ANIMALS, WILD; ANSERIFORMES; FECES; HUMANS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; MICE; MICE, INBRED BALB C; MOLECULAR SEQUENCE DATA; PHYLOGENY; VIRAL PROTEINS; VIRULENCE; ZAMBIA;

ANATIDAE; AVES; AVIAN INFLUENZA VIRUS; HUMAN INFLUENZA VIRUS; INFLUENZA A VIRUS; MAMMALIA; MUS;

EID: 79956310538     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.030403-0     Document Type: Article

References (48)

1. Abolnik, C. (2007). Molecular characterization of H5N2 avian influenza viruses isolated from South African ostriches in 2006. Avian Dis 51, 873-879.
2. Abolnik, C., Bisschop, S., Gerdes, T., Olivier, A. & Horner, R. (2007). Outbreaks of avian influenza H6N2 viruses in chickens arose by a reassortment of H6N8 and H9N2 ostrich viruses. Virus Genes 34, 37-45.
3. Abolnik, C., Gerdes, G. H., Sinclair, M., Ganzevoort, B. W., Kitching, J. P., Burger, C. E., Romito, M., Dreyer, M., Swanepoel, S. & other authors (2010). Phylogenetic analysis of influenza A viruses (H6N8, H1N8, H4N2, H9N2, H10N7) isolated from wild birds, ducks, and ostriches in South Africa from 2007 to 2009. Avian Dis 54 (Suppl.), 313-322.
4. Alexander, D. J. (2007). Summary of avian influenza activity in Europe, Asia, Africa, and Australasia, 2002-2006. Avian Dis 51 (Suppl.), 161-166.
5. Bahl, J., Vijaykrishna, D., Holmes, E. C., Smith, G. J. D. & Guan, Y. (2009). Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. Virology 390, 289-297.
6. Beare, A. S. & Webster, R. G. (1991). Replication of avian influenza viruses in humans. Arch Virol 119, 37-42.
7. Brown, I. H. (2010). Summary of avian influenza activity in Europe, Asia, and Africa, 2006-2009. Avian Dis 54 (Suppl.), 187-193.
8. Brown, J. D., Goekjian, G., Poulson, R., Valeika, S. & Stallknecht, D. E. (2009). Avian influenza virus in water: infectivity is dependent on pH, salinity and temperature. Vet Microbiol 136, 20-26.
9. Capua, I. & Alexander, D. J. (2006). The challenge of avian influenza to the veterinary community. Avian Pathol 35, 189-205.
10. Caron, A., Abolnik, C., Mundava, J., Gaidet, N., Burger, C. E., Mochotlhoane, B., Bruinzeel, L., Chiweshe, N., de Garine-Wichatitsky, M. & Cumming, G. S. (2010). Persistence of low pathogenic avian influenza virus in waterfowl in a Southern African ecosystem. Eco Health (Epub ahead of print).
11. Chen, G.-W., Chang, S.-C., Mok, C.-K., Lo, Y.-L., Kung, Y.-N., Huang, J.-H., Shih, Y.-H., Wang, J.-Y., Chiang, C. & other authors (2006). Genomic signatures of human versus avian influenza A viruses. Emerg Infect Dis 12, 1353-1360.
12. Conenello, G. M., Zamarin, D., Perrone, L. A., Tumpey, T. & Palese, P. (2007). A single mutation in the PB1-F2 of H5N1 (HK/97) and 1918 influenza A viruses contributes to increased virulence. PLoS Pathog 3, 1414-1421.
13. de Wit, E., Kawaoka, Y., de Jong, M. D. & Fouchier, R. A. (2008). Pathogenicity of highly pathogenic avian influenza virus in mammals. Vaccine 26 (Suppl. 4), D54-D58.
14. Driskell, E. A., Jones, C. A., Stallknecht, D. E., Howerth, E. W. & Tompkins, S. M. (2010). Avian influenza virus isolates from wild birds replicate and cause disease in a mouse model of infection. Virology 399, 280-289.
15. Duan, L., Campitelli, L., Fan, X. H., Leung, Y. H., Vijaykrishna, D., Zhang, J. X., Donatelli, I., Delogu, M., Li, K. S. & other authors (2007). Characterization of low-pathogenic H5 subtype influenza viruses from Eurasia: implications for the origin of highly pathogenic H5N1 viruses. J Virol 81, 7529-7539.
16. Ducatez, M. F., Olinger, C. M., Owoade, A. A., De Landtsheer, S., Ammerlaan, W., Niesters, H. G. M., Osterhaus, A. D. M. E., Fouchier, R. A. M. & Muller, C. P. (2006). Avian flu: multiple introductions of H5N1 in Nigeria. Nature 442, 37.
17. Finkelstein, D. B., Mukatira, S., Mehta, P. K., Obenauer, J. C., Su, X., Webster, R. G. & Naeve, C. W. (2007). Persistent host markers in pandemic and H5N1 influenza viruses. J Virol 81, 10292-10299.
18. Gaidet, N., Dodman, T., Caron, A., Balança, G., Desvaux, S., Goutard, F., Cattoli, G., Lamarque, F., Hagemeijer, W. & Monicat, F. (2007). Avian influenza viruses in water birds, Africa. Emerg Infect Dis 13, 626-629.
19. Gaidet, N., Cattoli, G., Hammoumi, S., Newman, S. H., Hagemeijer, W., Takekawa, J. Y., Cappelle, J., Dodman, T., Joannis, T. & &/x&&namegr type=editor&&name&&fname&other&/fname&&x& &/x&&sname&authors&/sname&&/name&&/namegr& (2008). Evidence of infection by H5N2 highly pathogenic avian influenza viruses in healthy wild waterfowl. PLoS Pathog 4, e1000127.
20. Gill, J. S., Webby, R., Gilchrist, M. J. R. & Gray, G. C. (2006). Avian influenza among waterfowl hunters and wildlife professionals. Emerg Infect Dis 12, 1284-1286.
21. Gillim-Ross, L., Santos, C., Chen, Z., Aspelund, A., Yang, C.-F., Ye, D., Jin, H., Kemble, G. & Subbarao, K. (2008). Avian influenza H6 viruses productively infect and cause illness in mice and ferrets. J Virol 82, 10854-10863.
22. Hinshaw, V. S., Webster, R. G., Easterday, B. C. & Bean, W. J., Jr (1981). Replication of avian influenza A viruses in mammals. Infect Immun 34, 354-361.
23. Huelsenbeck, J. P. & Ronquist, F. R. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755
24. Joseph, T., McAuliffe, J., Lu, B., Jin, H., Kemble, G. & Subbarao, K. (2007). Evaluation of replication and pathogenicity of avian influenza a H7 subtype viruses in a mouse model. J Virol 81, 10558-10566.
25. Kida, H., Ito, T., Yasuda, J., Shimizu, Y., Itakura, C., Shortridge, K. F., Kawaoka, Y. & Webster, R. G. (1994). Potential for transmission of avian influenza viruses to pigs. J Gen Virol 75, 2183-2188.
26. Kim, H.-R., Lee, Y.-J., Lee, K.-K., Oem, J.-K., Kim, S.-H., Lee, M. -H., Lee, O.-S. & Park, C.-K. (2010). Genetic relatedness of H6 subtype avian influenza viruses isolated from wild birds and domestic ducks in Korea and their pathogenicity in animals. J Gen Virol 91, 208-219.
27. Li, K. S., Xu, K. M., Peiris, J. S., Poon, L. L., Yu, K. Z., Yuen, K. Y., Shortridge, K. F., Webster, R. G. & Guan, Y. (2003). Characterization of H9 subtype influenza viruses from the ducks of southern China: a candidate for the next influenza pandemic in humans? J Virol 77, 6988-6994.
28. Li, K. S., Guan, Y., Wang, J., Smith, G. J. D., Xu, K. M., Duan, L., Rahardjo, A. P., Puthavathana, P., Buranathai, C. & other authors (2004). Genesis of a highly pathogenic and potentially pandemic H5N1 influenza virus in eastern Asia. Nature 430, 209-213.
29. Munster, V. J., Baas, C., Lexmond, P., Waldenström, J., Wallensten, A., Fransson, T., Rimmelzwaan, G. F., Beyer, W. E., Schutten, M. & other authors (2007). Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS Pathog 3, e61.
30. Murphy, B. R., Hinshaw, V. S., Sly, D. L., London, W. T., Hosier, N. T., Wood, F. T., Webster, R. G. & Chanock, R. M. (1982). Virulence of avian influenza A viruses for squirrel monkeys. Infect Immun 37, 1119-1126.
31. Myers, K. P., Setterquist, S. F., Capuano, A. W. & Gray, G. C. (2007). Infection due to 3 avian influenza subtypes in United States veterinarians. Clin Infect Dis 45, 4-9.
32. Olsen, B., Munster, V. J., Wallensten, A., Waldenström, J., Osterhaus, A. D. & Fouchier, R. A. (2006). Global patterns of influenza A virus in wild birds. Science 312, 384-388.
33. Peiris, J. S., de Jong, M. D. & Guan, Y. (2007). Avian influenza virus (H5N1): a threat to human health. Clin Microbiol Rev 20, 243-267.
34. Posada, D. & Crandall, K. A. (2001). Selecting the best-fit model of nucleotide substitution. Syst Biol 50, 580-601.
35. Reed, L. J. & Muench, H. (1938). A simple method of estimating fifty percent endpoints. Am J Hyg 27, 493-497.
36. Röhm, C., Horimoto, T., Kawaoka, Y., Süss, J. & Webster, R. G. (1995). Do hemagglutinin genes of highly pathogenic avian influenza viruses constitute unique phylogenetic lineages? Virology 209, 664-670.
37. Shaw, M., Cooper, L., Xu, X., Thompson, W., Krauss, S., Guan, Y., Zhou, N., Klimov, A., Cox, N. & other authors (2002). Molecular changes associated with the transmission of avian influenza a H5N1 and H9N2 viruses to humans. J Med Virol 66, 107-114.
38. Shinya, K., Makino, A., Ozawa, M., Kim, J. H., Sakai-Tagawa, Y., Ito, M., Le, Q. M. & Kawaoka, Y. (2009). Ostrich involvement in the selection of H5N1 influenza virus possessing mammalian-type amino acids in the PB2 protein. J Virol 83, 13015-13018.
39. Shortridge, K. F. (1992). Pandemic influenza: a zoonosis? Semin Respir Infect 7, 11-25.
40. Simulundu, E., Mweene, A. S., Tomabechi, D., Hang̈ombe, B. M., Ishii, A., Suzuki, Y., Nakamura, I., Sawa, H., Sugimoto, C. & other authors (2009). Characterization of H3N6 avian influenza virus isolated from a wild white pelican in Zambia. Arch Virol 154, 1517-1522.
41. Smith, G. J. D., Fan, X. H., Wang, J., Li, K. S., Qin, K., Zhang, J. X., Vijaykrishna, D., Cheung, C. L., Huang, K. & other authors (2006). Emergence and predominance of an H5N1 influenza variant in China. Proc Natl Acad Sci U S A 103, 16936-16941.
42. Swofford, D. L. (2001). PAUP*: phylogenetic analysis using parsimony (and other methods) 4.0 beta. Sunderland, MA: Sinauer Associates.
43. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
44. Wan, H., Sorrell, E. M., Song, H., Hossain, M. J., Ramirez-Nieto, G., Monne, I., Stevens, J., Cattoli, G., Capua, I. & other authors (2008). Replication and transmission of H9N2 influenza viruses in ferrets: evaluation of pandemic potential. PLoS ONE 3, e2923.
45. Wang, G., Zhan, D., Li, L., Lei, F., Liu, B., Liu, D., Xiao, H., Feng, Y., Li, J. & other authors (2008). H5N1 avian influenza re-emergence of Lake Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation. J Gen Virol 89, 697-702.
46. Webster, R. G., Bean, W. J., Gorman, O. T., Chambers, T. M. & Kawaoka, Y. (1992). Evolution and ecology of influenza A viruses. Microbiol Rev 56, 152-179.
47. World Health Organization (2010). Cumulative number of confirmed human cases of avian influenza A/(H5N1) reported to WHO. http://www.who.int/csr/disease/avian_influenza/country/cases_table_2010_12_29/en/index.html. Accessed 4 January 2011.
48. Xu, K. M., Smith, G. J. D., Bahl, J., Duan, L., Tai, H., Vijaykrishna, D., Wang, J., Zhang, J. X., Li, K. S. & other authors (2007). The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005. J Virol 81, 10389-10401.