-
1
-
-
0026460892
-
Mammalian stress response: Cell physiology, structure/function of stress proteins, and implications for medicine and disease
-
W. J. Welch, "Mammalian stress response: cell physiology, structure/function of stress proteins, and implications for medicine and disease," Physiological Reviews, vol. 72, no. 4, pp. 1063-1081, 1992.
-
(1992)
Physiological Reviews
, vol.72
, Issue.4
, pp. 1063-1081
-
-
Welch, W.J.1
-
2
-
-
84868665516
-
How to cluster gene expression dynamics in response to environmental signals
-
Y. Wang, M. Xu, Z. Wang, M. Tao, J. Zhu, L. Wang, R. Li, S. A. Berceli, and R. Wu, "How to cluster gene expression dynamics in response to environmental signals," Briefings in Bioinformatics, 2011.
-
(2011)
Briefings in Bioinformatics
-
-
Wang, Y.1
Xu, M.2
Wang, Z.3
Tao, M.4
Zhu, J.5
Wang, L.6
Li, R.7
Berceli, S.A.8
Wu, R.9
-
3
-
-
79651470986
-
Pharmacogenomic biomarkers: New tools in current and future drug therapy
-
S. C. Sim and M. Ingelman-Sundberg, "Pharmacogenomic biomarkers: new tools in current and future drug therapy," Trends in Pharmacological Sciences, vol. 32, no. 2, pp. 72-81, 2011.
-
(2011)
Trends in Pharmacological Sciences
, vol.32
, Issue.2
, pp. 72-81
-
-
Sim, S.C.1
Ingelman-Sundberg, M.2
-
4
-
-
79151486380
-
Use of molecular markers for predicting therapy response in cancer patients
-
M. J. Duffy, N. ODonovan, and J. Crown, "Use of molecular markers for predicting therapy response in cancer patients," Cancer Treatment Reviews, vol. 37, no. 2, pp. 151-159, 2011.
-
(2011)
Cancer Treatment Reviews
, vol.37
, Issue.2
, pp. 151-159
-
-
Duffy, M.J.1
ODonovan, N.2
Crown, J.3
-
5
-
-
80054993340
-
Biomarkers to predict response to sunitinib therapy and prognosis in metastatic renal cell cancer
-
T. Yuasa, S. Takahashi, K. Hatake, J. Yonese, and I. Fukui, "Biomarkers to predict response to sunitinib therapy and prognosis in metastatic renal cell cancer," Cancer Science, vol. 102, no. 11, pp. 1949-1957, 2011.
-
(2011)
Cancer Science
, vol.102
, Issue.11
, pp. 1949-1957
-
-
Yuasa, T.1
Takahashi, S.2
Hatake, K.3
Yonese, J.4
Fukui, I.5
-
6
-
-
79955649353
-
Cancer microRNAs: From subtype profiling to predictors of response to therapy
-
E. Chan, D. E. E. Prado, and J. B. B. Weidhaas, "Cancer microRNAs: From subtype profiling to predictors of response to therapy." Trends in molecular medicine, vol. 17, no. 5, pp. 235-243, 2011.
-
(2011)
Trends in Molecular Medicine
, vol.17
, Issue.5
, pp. 235-243
-
-
Chan, E.1
Prado, D.E.E.2
Weidhaas, J.B.B.3
-
7
-
-
68249108128
-
Targeting the dna damage response for cancer therapy
-
S. N. Powell and R. S. Bindra, "Targeting the dna damage response for cancer therapy," DNA Repair, vol. 8, no. 9, pp. 1153-1165, 2009.
-
(2009)
DNA Repair
, vol.8
, Issue.9
, pp. 1153-1165
-
-
Powell, S.N.1
Bindra, R.S.2
-
8
-
-
84856019858
-
The DNA damage response and cancer therapy
-
C. J. Lord and A. Ashworth, "The DNA damage response and cancer therapy," Nature, vol. 481, no. 7381, pp. 287-294, 2012.
-
(2012)
Nature
, vol.481
, Issue.7381
, pp. 287-294
-
-
Lord, C.J.1
Ashworth, A.2
-
9
-
-
34548863946
-
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
-
J. Herschkowitz, K. Simin, V. Weigman, I. Mikaelian, J. Usary, Z. Hu, K. Rasmussen, L. Jones, S. Assefnia, S. Chandrasekharan, M. Backlund, Y. Yin, A. Khramtsov, R. Bastein, J. Quackenbush, R. Glazer, P. Brown, J. Green, L. Kopelovich, P. Furth, J. Palazzo, O. Olopade, P. Bernard, G. Churchill, T. Van Dyke, and C. Perou, "Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors," Genome Biology, vol. 8, no. 5, p. R76, 2007.
-
(2007)
Genome Biology
, vol.8
, Issue.5
-
-
Herschkowitz, J.1
Simin, K.2
Weigman, V.3
Mikaelian, I.4
Usary, J.5
Hu, Z.6
Rasmussen, K.7
Jones, L.8
Assefnia, S.9
Chandrasekharan, S.10
Backlund, M.11
Yin, Y.12
Khramtsov, A.13
Bastein, R.14
Quackenbush, J.15
Glazer, R.16
Brown, P.17
Green, J.18
Kopelovich, L.19
Furth, P.20
Palazzo, J.21
Olopade, O.22
Bernard, P.23
Churchill, G.24
Van Dyke, T.25
Perou, C.26
more..
-
10
-
-
79551545346
-
Is my network module preserved and reproducible?
-
P. Langfelder, R. Luo, M. C. Oldham, and S. Horvath, "Is my network module preserved and reproducible?" PLoS Comput Biol, vol. 7, no. 1, p. e1001057, 2011.
-
(2011)
PLoS Comput Biol
, vol.7
, Issue.1
-
-
Langfelder, P.1
Luo, R.2
Oldham, M.C.3
Horvath, S.4
-
11
-
-
77953236579
-
Quantitative Genetic Interactions Reveal Biological Modularity
-
P. Beltrao, G. Cagney, and N. J. Krogan, "Quantitative Genetic Interactions Reveal Biological Modularity," Cell, vol. 141, no. 5, pp. 739-745, 2010.
-
(2010)
Cell
, vol.141
, Issue.5
, pp. 739-745
-
-
Beltrao, P.1
Cagney, G.2
Krogan, N.J.3
-
12
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
J. Ihmels, G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai, "Revealing modular organization in the yeast transcriptional network." Nat Genet, vol. 31, no. 4, pp. 370-377, 2002.
-
(2002)
Nat Genet
, vol.31
, Issue.4
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
13
-
-
78649782914
-
Exploring hierarchical and overlapping modular structure in the yeast protein interaction network
-
C. Liu, J. Li, and Y. Zhao, "Exploring hierarchical and overlapping modular structure in the yeast protein interaction network." BMC genomics, vol. 11 Suppl 4, 2010.
-
(2010)
BMC Genomics
, vol.11
, Issue.SUPPL. 4
-
-
Liu, C.1
Li, J.2
Zhao, Y.3
-
14
-
-
77958564958
-
Community landscapes: An integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics
-
I. A. Kovács, R. Palotai, M. S. Szalay, and P. Csermely, "Community landscapes: An integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics," PLoS ONE, vol. 5, no. 9, p. e12528, 2010.
-
(2010)
PLoS ONE
, vol.5
, Issue.9
-
-
Kovács, I.A.1
Palotai, R.2
Szalay, M.S.3
Csermely, P.4
-
15
-
-
23244467882
-
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
-
J. Ihmels, S. Bergmann, M. Gerami-Nejad, I. Yanai, M. McClellan, J. Berman, and N. Barkai, "Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage," Science, vol. 309, no. 5736, pp. 938-940, 2005.
-
(2005)
Science
, vol.309
, Issue.5736
, pp. 938-940
-
-
Ihmels, J.1
Bergmann, S.2
Gerami-Nejad, M.3
Yanai, I.4
McClellan, M.5
Berman, J.6
Barkai, N.7
-
16
-
-
58149377592
-
Cyclic changes in gene expression induced by peg-interferon alfa-2b plus ribavirin in peripheral blood monocytes (pbmc) of hepatitis c patients during the first 10 weeks of treatment
-
M. Taylor, T. Tsukahara, J. McClintick, H. Edenberg, and P. Kwo, "Cyclic changes in gene expression induced by peg-interferon alfa-2b plus ribavirin in peripheral blood monocytes (pbmc) of hepatitis c patients during the first 10 weeks of treatment," Journal of Translational Medicine, vol. 6, no. 1, p. 66, 2008.
-
(2008)
Journal of Translational Medicine
, vol.6
, Issue.1
, pp. 66
-
-
Taylor, M.1
Tsukahara, T.2
McClintick, J.3
Edenberg, H.4
Kwo, P.5
-
17
-
-
34548024598
-
Integrating physical and genetic maps: From genomes to interaction networks
-
A. Beyer, S. Bandyopadhyay, and T. Ideker, "Integrating physical and genetic maps: from genomes to interaction networks," Nature Reviews Genetics, vol. 8, no. 9, pp. 699-710, 2007.
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.9
, pp. 699-710
-
-
Beyer, A.1
Bandyopadhyay, S.2
Ideker, T.3
-
18
-
-
0032919364
-
Kegg: Kyoto encyclopedia of genes and genomes
-
H. Ogata, S. Goto, K. Sato, W. Fujibuchi, H. Bono, and M. Kanehisa, "Kegg: Kyoto encyclopedia of genes and genomes," Nucleic Acids Research, vol. 27, no. 1, pp. 29-34, 1999.
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
19
-
-
53749099231
-
Itfp: An integrated platform of mammalian transcription factors
-
G. Zheng, K. Tu, Q. Yang, Y. Xiong, C. Wei, L. Xie, Y. Zhu, and Y. Li, "Itfp: an integrated platform of mammalian transcription factors," Bioinformatics, vol. 24, no. 20, pp. 2416-2417, 2008.
-
(2008)
Bioinformatics
, vol.24
, Issue.20
, pp. 2416-2417
-
-
Zheng, G.1
Tu, K.2
Yang, Q.3
Xiong, Y.4
Wei, C.5
Xie, L.6
Zhu, Y.7
Li, Y.8
-
20
-
-
13444305306
-
Tred: A transcriptional regulatory element database and a platform for in silico gene regulation studies
-
F. Zhao, Z. Xuan, L. Liu, and M. Q. Zhang, "Tred: a transcriptional regulatory element database and a platform for in silico gene regulation studies," Nucleic Acids Research, vol. 33, no. suppl 1, pp. D103-D107, 2005.
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.SUPPL. 1
-
-
Zhao, F.1
Xuan, Z.2
Liu, L.3
Zhang, M.Q.4
-
21
-
-
54949127160
-
Irefindex: A consolidated protein interaction database with provenance
-
S. Razick, G. Magklaras, and I. Donaldson, "irefindex: A consolidated protein interaction database with provenance," BMC Bioinformatics, vol. 9, no. 1, p. 405, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 405
-
-
Razick, S.1
Magklaras, G.2
Donaldson, I.3
-
23
-
-
77952334885
-
Closegraph: Mining closed frequent graph patterns
-
Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining, ser.
-
X. Yan and J. Han, "Closegraph: mining closed frequent graph patterns," in Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining, ser. KDD '03, 2003, pp. 286-295.
-
KDD '03, 2003
, pp. 286-295
-
-
Yan, X.1
Han, J.2
-
24
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander, and J. P. Mesirov, "Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles," Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 43, pp. 15 545-15 550, 2005.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
25
-
-
80052215666
-
Noa: A novel network ontology analysis method. Nucleic acids research
-
doi: 10.1093/nar/gkr251
-
J. Wang, Q. Huang, Z. Liu, Y. Wang, L. Wu, L. Chen, and X. Zhang, "Noa: a novel network ontology analysis method. nucleic acids research," Nucleic Acids Research, p. doi: 10.1093/nar/gkr251, 2011.
-
(2011)
Nucleic Acids Research
-
-
Wang, J.1
Huang, Q.2
Liu, Z.3
Wang, Y.4
Wu, L.5
Chen, L.6
Zhang, X.7
-
26
-
-
79959923522
-
G:Profiler - Web server for functional interpretation of gene lists (2011 update)
-
J. Reimand, T. Arak, and J. Vilo, "g:profiler - web server for functional interpretation of gene lists (2011 update)," Nucleic Acids Research, 2011.
-
(2011)
Nucleic Acids Research
-
-
Reimand, J.1
Arak, T.2
Vilo, J.3
-
27
-
-
16344389891
-
Permutmatrix: A graphical environment to arrange gene expression profiles in optimal linear order
-
G. Caraux and S. Pinloche, "Permutmatrix: a graphical environment to arrange gene expression profiles in optimal linear order," Bioinformatics, vol. 21, no. 7, pp. 1280-1281, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1280-1281
-
-
Caraux, G.1
Pinloche, S.2
-
28
-
-
76749092270
-
The weka data mining software: An update
-
M. Hall, E. Frank, G. Holmes, B. Pfahringer, P. Reutemann, and I. H. Witten, "The weka data mining software: an update," SIGKDD Explor. Newsl., vol. 11, no. 1, pp. 10-18, 2009.
-
(2009)
SIGKDD Explor. Newsl.
, vol.11
, Issue.1
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witten, I.H.6
-
29
-
-
84861893428
-
Coexpression network analysis in chronic hepatitis b and c hepatic lesion reveals distinct patterns of disease progression to hepatocellular carcinoma
-
D. He, Z. Liu, M. Honda, S. Kaneko, and L. Chen, "Coexpression network analysis in chronic hepatitis b and c hepatic lesion reveals distinct patterns of disease progression to hepatocellular carcinoma," Journal of Molecular Cell Biology, vol. 4, no. 3, pp. 140-152, 2012.
-
(2012)
Journal of Molecular Cell Biology
, vol.4
, Issue.3
, pp. 140-152
-
-
He, D.1
Liu, Z.2
Honda, M.3
Kaneko, S.4
Chen, L.5
-
30
-
-
84863128658
-
Identifying disease genes and module biomarkers with differential interactions
-
X. Liu, Z. Liu, X. Zhao, and L. Chen, "Identifying disease genes and module biomarkers with differential interactions," Journal of the American Medical Informatics Association, vol. 19, pp. 241-248, 2011.
-
(2011)
Journal of the American Medical Informatics Association
, vol.19
, pp. 241-248
-
-
Liu, X.1
Liu, Z.2
Zhao, X.3
Chen, L.4
-
31
-
-
84859741480
-
Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers
-
DOI:10.1038/srep00342
-
L. Chen, R. Liu, Z. Liu, M. Li, and K. Aihara, "Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers," Scientific Reports, vol. 2, p. DOI:10.1038/srep00342, 2012.
-
(2012)
Scientific Reports
, vol.2
-
-
Chen, L.1
Liu, R.2
Liu, Z.3
Li, M.4
Aihara, K.5
|