-
1
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
10.1038/nature04670, 16554755
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440:637-643. 10.1038/nature04670, 16554755.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
-
2
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
10.1038/415180a, 11805837
-
Ho Y, Gruhler A, Heilbut A, Bader G, Moore L, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415:180-183. 10.1038/415180a, 11805837.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.4
Moore, L.5
-
3
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
31875, 11283351, 10.1073/pnas.061034498
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001, 98:4569-74. 31875, 11283351, 10.1073/pnas.061034498.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
4
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
10.1038/nrg1272, 14735121
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-113. 10.1038/nrg1272, 14735121.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
5
-
-
23744481400
-
What do we learn from high-throughput protein interaction data?
-
10.1586/14789450.1.1.111, 15966804
-
Titz B, Schlesner M, Uetz P. What do we learn from high-throughput protein interaction data?. Expert Rev Proteomics 2004, 1:111-121. 10.1586/14789450.1.1.111, 15966804.
-
(2004)
Expert Rev Proteomics
, vol.1
, pp. 111-121
-
-
Titz, B.1
Schlesner, M.2
Uetz, P.3
-
6
-
-
77952251569
-
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
-
10.1186/1471-2105-11-S3-S3, 20438650
-
Cho YR, Zhang A. Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins. BMC Bioinformatics 2010, 11(Suppl 3):S3. 10.1186/1471-2105-11-S3-S3, 20438650.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL 3
-
-
Cho, Y.R.1
Zhang, A.2
-
7
-
-
75149164017
-
A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
-
10.1186/1471-2105-11-S1-S25, 20122197
-
Chin CH, Chen SH, Ho CW, Ko MT, Lin CY. A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles. BMC Bioinformatics 2010, 11(Suppl 1):S25. 10.1186/1471-2105-11-S1-S25, 20122197.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.SUPPL 1
-
-
Chin, C.H.1
Chen, S.H.2
Ho, C.W.3
Ko, M.T.4
Lin, C.Y.5
-
9
-
-
85170282443
-
A density-based algorithm for discovering clusters in large spatial databases with noise
-
Ester M, Kriegel H, Jörg S, Xu X. A density-based algorithm for discovering clusters in large spatial databases with noise. Proceedings of the 2nd International Conference on Knowledge Discovery and Data Mining 1996, 1996:226-231.
-
(1996)
Proceedings of the 2nd International Conference on Knowledge Discovery and Data Mining
, vol.1996
, pp. 226-231
-
-
Ester, M.1
Kriegel, H.2
Jörg, S.3
Xu, X.4
-
10
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
218723, 14517352, 10.1073/pnas.2032324100
-
Spirin V, Mirny LA. Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 2003, 100:12123-12128. 218723, 14517352, 10.1073/pnas.2032324100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.A.2
-
11
-
-
2942552459
-
An automatedmethod for findingmolecular complexes in large protein interaction networks
-
149346, 12525261, 10.1186/1471-2105-4-2
-
Bader GD, Hogue CW. An automatedmethod for findingmolecular complexes in large protein interaction networks. BMC Bioinformatics 2003, 4:2. 149346, 12525261, 10.1186/1471-2105-4-2.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
12
-
-
33645830948
-
CFinder: locating cliques and overlapping modules in biological networks
-
10.1093/bioinformatics/btl039, 16473872
-
Adamcsek B, Palla G, Farkas IJ, Derényi I, Vicsek T. CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics 2006, 22:1021-1023. 10.1093/bioinformatics/btl039, 16473872.
-
(2006)
Bioinformatics
, vol.22
, pp. 1021-1023
-
-
Adamcsek, B.1
Palla, G.2
Farkas, I.J.3
Derényi, I.4
Vicsek, T.5
-
13
-
-
33744805096
-
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
-
1473204, 16613608, 10.1186/1471-2105-7-207
-
Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinformatics 2006, 7:207. 1473204, 16613608, 10.1186/1471-2105-7-207.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 207
-
-
Altaf-Ul-Amin, M.1
Shinbo, Y.2
Mihara, K.3
Kurokawa, K.4
Kanaya, S.5
-
14
-
-
54349096842
-
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
-
2570695, 18816408, 10.1186/1471-2105-9-398
-
Li M, Chen J, Wang J, Hu B, Chen G. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics 2008, 9:398. 2570695, 18816408, 10.1186/1471-2105-9-398.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 398
-
-
Li, M.1
Chen, J.2
Wang, J.3
Hu, B.4
Chen, G.5
-
15
-
-
0034515057
-
The genetics of peroxisome biogenesis
-
10.1146/annurev.genet.34.1.623, 11092841
-
Sacksteder KA, Gould SJ. The genetics of peroxisome biogenesis. Annu Rev Genet 2000, 34:623-652. 10.1146/annurev.genet.34.1.623, 11092841.
-
(2000)
Annu Rev Genet
, vol.34
, pp. 623-652
-
-
Sacksteder, K.A.1
Gould, S.J.2
-
16
-
-
0035184338
-
Peroxisome biogenesis
-
10.1146/annurev.cellbio.17.1.701, 11687502
-
Purdue PE, Lazarow PB. Peroxisome biogenesis. Annu Rev Cell Dev Biol 2001, 17:701-752. 10.1146/annurev.cellbio.17.1.701, 11687502.
-
(2001)
Annu Rev Cell Dev Biol
, vol.17
, pp. 701-752
-
-
Purdue, P.E.1
Lazarow, P.B.2
-
17
-
-
0037192780
-
COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression
-
10.1074/jbc.C200023200, 11805083
-
Krogan NJ, Dover J, Khorrami S, Greenblatt JF, Schneider J, Johnston M, Shilatifard A. COMPASS, a histone H3 (Lysine 4) methyltransferase required for telomeric silencing of gene expression. J Biol Chem 2002, 277:10753-10755. 10.1074/jbc.C200023200, 11805083.
-
(2002)
J Biol Chem
, vol.277
, pp. 10753-10755
-
-
Krogan, N.J.1
Dover, J.2
Khorrami, S.3
Greenblatt, J.F.4
Schneider, J.5
Johnston, M.6
Shilatifard, A.7
-
18
-
-
0036682601
-
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination
-
126137, 12145212, 10.1093/emboj/cdf390
-
Dichtl B, Blank D, Sadowski M, Hübner W, Weiser S, Keller W. Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. EMBO J 2002, 21:4125-4135. 126137, 12145212, 10.1093/emboj/cdf390.
-
(2002)
EMBO J
, vol.21
, pp. 4125-4135
-
-
Dichtl, B.1
Blank, D.2
Sadowski, M.3
Hübner, W.4
Weiser, S.5
Keller, W.6
-
19
-
-
1642309579
-
The essential WD repeat protein Swd2 has dual functions in RNA polymerase II transcription termination and lysine 4 methylation of histone H3
-
371121, 15024081, 10.1128/MCB.24.7.2932-2943.2004
-
Cheng H, He X, Moore C. The essential WD repeat protein Swd2 has dual functions in RNA polymerase II transcription termination and lysine 4 methylation of histone H3. Mol Cell Biol 2004, 24:2932-2943. 371121, 15024081, 10.1128/MCB.24.7.2932-2943.2004.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 2932-2943
-
-
Cheng, H.1
He, X.2
Moore, C.3
-
20
-
-
54349106706
-
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
-
2570367, 18801191, 10.1186/1471-2105-9-382
-
Cho YR, Shi L, Ramanathan M, Zhang A. A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge. BMC Bioinformatics 2008, 9:382. 2570367, 18801191, 10.1186/1471-2105-9-382.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 382
-
-
Cho, Y.R.1
Shi, L.2
Ramanathan, M.3
Zhang, A.4
-
21
-
-
55449131589
-
Probabilistic protein function prediction from heterogeneous genome-wide data
-
1828618, 17396164, 10.1371/journal.pone.0000337
-
Nariai N, Kolaczyk ED, Kasif S. Probabilistic protein function prediction from heterogeneous genome-wide data. PLoS ONE 2007, 2:e337. 1828618, 17396164, 10.1371/journal.pone.0000337.
-
(2007)
PLoS ONE
, vol.2
-
-
Nariai, N.1
Kolaczyk, E.D.2
Kasif, S.3
-
22
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
10.1038/nature02555, 15190252
-
Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, Vidal M. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 2004, 430:88-93. 10.1038/nature02555, 15190252.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.8
Cusick, M.E.9
Roth, F.P.10
Vidal, M.11
-
23
-
-
43149087837
-
Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast
-
Jin G, Zhang S, Zhang XS, Chen L. Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast. PLoS One 2007, 2:el207.
-
(2007)
PLoS One
, vol.2
-
-
Jin, G.1
Zhang, S.2
Zhang, X.S.3
Chen, L.4
-
24
-
-
59849125136
-
Dynamic modularity in protein interaction networks predicts breast cancer outcome
-
10.1038/nbt.1522, 19182785
-
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 2009, 27:199-204. 10.1038/nbt.1522, 19182785.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 199-204
-
-
Taylor, I.W.1
Linding, R.2
Warde-Farley, D.3
Liu, Y.4
Pesquita, C.5
Faria, D.6
Bull, S.7
Pawson, T.8
Morris, Q.9
Wrana, J.L.10
-
25
-
-
0035799707
-
Lethality and centrality in protein networks
-
10.1038/35075138, 11333967
-
Jeong H, Mason SP, Barabási AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 2001, 411:41-42. 10.1038/35075138, 11333967.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
26
-
-
33745712594
-
Why do hubs tend to be essential in protein networks?
-
1473040, 16751849, 10.1371/journal.pgen.0020088
-
He X, Zhang J. Why do hubs tend to be essential in protein networks?. PLoS Genet 2006, 2:e88. 1473040, 16751849, 10.1371/journal.pgen.0020088.
-
(2006)
PLoS Genet
, vol.2
-
-
He, X.1
Zhang, J.2
|