Mapping pH-induced protein structural changes under equilibrium conditions by pulsed oxidative labeling and mass spectrometry

Analytical Chemistry

Volumn 84, Issue 21, 2012, Pages 9124-9130

  Vahidi, Siavash ^a   Stocks, Bradley B ^a   Liaghati Mobarhan, Yalda ^a   Konermann, Lars ^a  

^a UNIVERSITY OF WESTERN ONTARIO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ACIDIC PH; APOMYOGLOBIN; COMPARATIVE MEASUREMENTS; CONFORMATIONAL STUDY; DIFFERENT SOLVENTS; EQUILIBRIUM CONDITIONS; EQUILIBRIUM INTERMEDIATE; HIGH-RESOLUTION TECHNIQUES; HYDROGEN/DEUTERIUM EXCHANGE; HYDROXYL RADICALS; LASER PHOTOLYSIS; MODEL SYSTEM; OXIDATIVE MODIFICATION; PH DEPENDENCE; PH-DEPENDENT; PHOTOCHEMICAL OXIDATION; SIDE-CHAINS; STRUCTURAL CHANGE; STRUCTURAL CHARACTERIZATION;

MASS SPECTROMETRY; PHOTOLYSIS;

PROTEINS;

APOMYOGLOBIN; APOPROTEIN; HYDROXYL RADICAL; MYOGLOBIN; SOLVENT;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; MASS SPECTROMETRY; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; PH; PROTEIN SECONDARY STRUCTURE; STAINING;

AMINO ACID SEQUENCE; ANIMALS; APOPROTEINS; HYDROGEN-ION CONCENTRATION; HYDROXYL RADICAL; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MYOGLOBIN; OXIDATION-REDUCTION; PROTEIN STRUCTURE, SECONDARY; SOLVENTS; STAINING AND LABELING;

EID: 84868579517     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302393g     Document Type: Article

References (57)

1. Bai, Y.; Sosnick, T. R.; Mayne, L.; Englander, S. W. Science 1995, 269, 192-197
2. Hughson, F. M.; Wright, P. E.; Baldwin, R. L. Science 1990, 249, 1544-1548
3. Chiti, F.; Dobson, C. M. Annu. Rev. Biochem. 2006, 75, 333-366
4. Detoma, A. S.; Salamekh, S.; Ramamoorthy, A.; Lim, M. H. Chem. Soc. Rev. 2012, 41, 608-621
5. Bartlett, A. I.; Radford, S. E. Nat. Struct. Mol. Biol. 2009, 16, 582-588
6. Chamberlain, A. K.; Marqusee, S. Adv. Protein Chem. 2000, 53, 283-328
7. Parker, M. W. J. Biol. Phys. 2003, 29, 341-362
8. Mittermaier, A.; Kay, L. E. Science 2006, 312, 224-228
9. Kaltashov, I. A.; Eyles, S. J. Mass Spectrometry in Structural Biology and Biophysics: Architecture, Dynamics, and Interaction of Biomolecules, 2 nd ed.; Wiley: Hoboken, NJ, 2012.
10. Sharon, M. J. Am. Soc. Mass Spectrom. 2010, 21, 487-500
11. Ashcroft, A. E. J. Am. Soc. Mass Spectrom. 2010, 21, 1087-1096
12. Dobo, A.; Kaltashov, I. A. Anal. Chem. 2001, 73, 4763-4773
13. Ly, T.; Liu, Z. J.; Pujanauski, B. G.; Sarpong, R.; Julian, R. R. Anal. Chem. 2008, 80, 5059-5064
14. Dimova, K.; Kalkhof, S.; Pottratz, I.; Ihling, C.; Rodriguez-Castaneda, F.; Liepold, T.; Griesinger, C.; Brose, N.; Sinz, A.; Jahn, O. Biochemistry 2009, 48, 5908-5921
15. Englander, S. W. J. Am. Soc. Mass Spectrom. 2006, 17, 1481-1489
16. Percy, A. J.; Rey, M.; Burns, K. M.; Schriemer, D. C. Anal. Chim. Acta 2012, 721, 7-21
17. Iacob, R. E.; Engen, J. R. J. Am. Soc. Mass Spectrom. 2012, 23, 1003-1010
18. Rand, K. D.; Zehl, M.; Jensen, O. N.; Jørgensen, T. J. D. Anal. Chem. 2009, 81, 5577-5584
19. Pan, J.; Han, J.; Borchers, C. H.; Konermann, L. J. Am. Chem. Soc. 2009, 131, 12801-12808
20. Mendoza, V. L.; Vachet, R. W. Mass Spectrom. Rev. 2009, 28, 785-815
21. Jumper, C. C.; Bomgarden, R.; Rogers, J.; Etienne, C.; Schriemer, D. C. Anal. Chem. 2012, 84, 4411-4418
22. Wang, L.; Chance, M. R. Anal. Chem. 2011, 83, 7234-7241
23. Stocks, B. B.; Konermann, L. Anal. Chem. 2009, 81, 20-27
24. Zheng, X.; Wintrode, P. L.; Chance, M. R. Structure 2008, 16, 38-51
25. Hambly, D. M.; Gross, M. L. J. Am. Soc. Mass Spectrom. 2005, 16, 2057-2063
26. Bai, Y.; Milne, J. S.; Mayne, L.; Englander, S. W. Proteins: Struct., Funct., Genet. 1993, 17, 75-86
27. Coales, S. J.; E, S. Y.; Lee, J. E.; Ma, A.; Morrow, J. A.; Hamuro, Y. Rapid Commun. Mass Spectrom. 2010, 24, 3585-3592
28. Tong, X.; Wren, J. C.; Konermann, L. Anal. Chem. 2008, 80, 2222-2231
29. Pan, Y.; Briggs, M. S. Biochemistry 1992, 31, 11405-11412
30. Keppel, T. R.; Howard, B. A.; Weis, D. D. Biochemistry 2011, 50, 8722-8732
31. Hiller, K. O.; Masloch, B.; Gobl, M.; Asmus, K. D. J. Am. Chem. Soc. 1981, 103, 2734-2743
32. Buxton, G. V.; Greenstock, C. L.; Helman, W. P.; Ross, A. B. J. Phys. Chem. Ref. Data 1988, 17, 513-886
33. Schoneich, C.; Yang, J. J. Chem. Soc., Perkin Trans. 1996, 2, 915-924
34. Xu, G.; Chance, M. R. Chem. Rev. 2007, 107, 3514-3543
35. Johnson, R. S.; Walsh, K. A. Protein Sci. 1994, 3, 2411-2418
36. Hambly, D. M.; Gross, M. L. Int. J. Mass Spectrom. 2007, 259, 124-129
37. Maleknia, S. D.; Downard, K. M. Eur. J. Biochem. 2001, 268, 5578-5588
38. Evans, S. V.; Brayer, G. D. J. Mol. Biol. 1990, 213, 885-897
39. Eliezer, D.; Yao, J.; Dyson, H. J.; Wright, P. E. Nat. Struct. Biol. 1998, 5, 148-155
40. Teale, F. W. J. Biochim. Biophys. Acta 1959, 35, 543
41. Antonini, E.; Brunori, M. Hemoglobin and Myoglobin in Their Reactions With Ligands; North-Holland Publishing Company: Amsterdam, The Netherlands, London, 1971.
42. Kelly, S. W.; Jess, T. J.; Price, N. C. Biochim. Biophys. Acta 2005, 1751, 119-139
43. Gau, B. C.; Sharp, J. S.; Rempel, D. L.; Gross, M. L. Anal. Chem. 2009, 81, 6563-6571
44. Bendall, S. C.; Hughes, C.; Campbell, J. J.; Stewart, M. H.; Pittock, P.; Liu, S.; Bonneil, E.; Thibault, P.; Bhatia, M.; Lajoie, G. A. Mol. Cell. Proteomics 2009, 8, 421-432
45. Lacerda, C. M. R.; Xin, L.; Rogers, I.; Reardon, K. F. Briefings Funct. Genomics Proteomics 2008, 7, 119-126
46. Stocks, B. B.; Rezvanpour, A.; Shaw, G. S.; Konermann, L. J. Mol. Biol. 2011, 409, 669-679
47. Goto, Y.; Fink, A. L. J. Mol. Biol. 1990, 214, 803-805
48. Eliezer, D.; Jennings, P. A.; Dyson, H. J.; Wright, P. E. FEBS Lett. 1997, 417, 92-96
49. van Holde, K.; Johnson, W.; Shing, Ho, P. Principles of Physical Biochemistry, 2 nd ed.; Pearson Prentice Hall: Upper Saddle River, NJ, 2006.
50. Creighton, T. E. Proteins; W. H. Freeman & Co: New York, 1993.
51. Maurus, R.; Overall, C. M.; Bogumil, R.; Luo, Y.; Mauk, A. G.; Smith, M.; Brayer, G. D. Biochim. Biophys. Acta 1997, 1341, 1-13
52. Zhang, H.; Gau, B. C.; Jones, L. M.; Vidavsky, I.; Gross, M. L. Anal. Chem. 2011, 83, 311-318
53. Ptitsyn, O. B. J. Protein Chem. 1987, 6, 273-293
54. Barrick, D.; Badwin, R. L. Protein Sci. 1993, 2, 869-876
55. Armstrong, B. D.; Choi, J.; Lopez, C.; Wesener, D. A.; Hubbell, W.; Cavagnero, S.; Han, S. J. Am. Chem. Soc. 2011, 133, 5987-5995
56. Bertagna, A. M.; Barrick, D. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12514-12519
57. Hambly, D. M.; Gross, M. L. In Protein Mass Spectrometry; Whitelegge, J. P., Ed.; Elsevier: Amsterdam, The Netherlands, 2009; Vol. 52, pp 151-177.