Fast photochemical oxidation of proteins for comparing structures of protein-ligand complexes: The calmodulin-peptide model system

Analytical Chemistry

Volumn 83, Issue 1, 2011, Pages 311-318

  Zhang, Hao ^a   Gau, Brian C ^a   Jones, Lisa M ^a   Vidavsky, Ilan ^a   Gross, Michael L ^a  

^a WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPREHENSIVE EXAMINATION; DRUG DISCOVERY; HIGH THROUGHPUT; HOLO STATE; LASER PHOTOLYSIS; LC-MS/MS; MELITTIN; PEPTIDE COMPLEX; PEPTIDE MODELS; PHOTOCHEMICAL OXIDATION; PROTEIN COMPLEXES; PROTEIN FOOTPRINTING; PROTEIN-LIGAND COMPLEXES; SENSITIVE INFORMATIONS; SIDE CHAINS; SKELETAL MUSCLE MYOSIN; STRUCTURAL CHANGE; STRUCTURAL COMPARISON; TIME-SCALES;

AMINO ACIDS; COMPLEXATION; HYDROGEN PEROXIDE; LIGANDS; MASS SPECTROMETRY; MUSCLE; OXIDATION; PEPTIDES; PHOTOLYSIS;

CALMODULIN;

CALCIUM; CALMODULIN; LIGAND; PEPTIDE;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATTLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; ELECTROSPRAY MASS SPECTROMETRY; KINETICS; LIQUID CHROMATOGRAPHY; METABOLISM; MOLECULAR GENETICS; OXIDATION REDUCTION REACTION; PHOTOCHEMISTRY; PROTEIN CONFORMATION; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; ANIMALS; CALCIUM; CALMODULIN; CATTLE; CHROMATOGRAPHY, LIQUID; KINETICS; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PEPTIDES; PHOTOCHEMICAL PROCESSES; PROTEIN CONFORMATION; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TANDEM MASS SPECTROMETRY;

EID: 78650772189     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac102426d     Document Type: Article

References (50)

1. Aebersold, R. and Mann, M. Nature 2003, 422, 198-207
2. Schermann, S. M., Simmons, D. A., and Konermann, L. Expert Rev. Proteomics 2005, 2, 475-485
3. Jay, D. G. J. Biol. Chem. 1984, 259, 15572-15578
4. Mirzabekov, A. D. and Melnikova, A. F. Mol. Biol. Rep. 1974, 1, 379-384
5. Sheshberadaran, H. and Payne, L. G. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 1-5
6. Hanai, R. and Wang, J. C. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 11904-11908
7. Fitzgerald, M. C. and West, G. M. J. Am. Soc. Mass Spectrom. 2009, 20, 1193-1206
8. Wales, T. E. and Engen, J. R. Mass Spectrom. Rev. 2006, 25, 158-170
9. Zhu, M. M., Rempel, D. L., Du, Z., and Gross, M. L. J. Am. Chem. Soc. 2003, 125, 5252-5253
10. Roulhac, P. L., Powell, K. D., Dhungana, S., Weaver, K. D., Mietzner, T. A., Crumbliss, A. L., and Fitzgerald, M. C. Biochemistry 2004, 43, 15767-15774
11. Mendoza, V. L. and Vachet, R. W. Mass Spectrom. Rev. 2009, 28, 785-815
12. Maleknia, S. D., Brenowitz, M., and Chance, M. R. Anal. Chem. 1999, 71, 3965-3973
13. Xu, G. and Chance, M. R. Anal. Chem. 2004, 76, 1213-1221
14. Sharp, J. S., Becker, J. M., and Hettich, R. L. Anal. Chem. 2004, 76, 672-683
15. Zhu, Y., Guo, T., Park, J. E., Li, X., Meng, W., Datta, A., Bern, M., Lim, S. K., and Sze, S. K. Mol. Cell. Proteomics 2009, 8, 1999-2010
16. Tong, X., Wren, J. C., and Konermann, L. Anal. Chem. 2007, 79, 6376-6382
17. Hambly, D. M. and Gross, M. L. J. Am. Soc. Mass Spectrom. 2005, 16, 2057-2063
18. Xu, G. and Chance, M. R. Chem. Rev. 2007, 107, 3514-3543
19. Weinstein, H. and Mehler, E. L. Annu. Rev. Physiol. 1994, 56, 213-236
20. Wriggers, W., Mehler, E., Pitici, F., Weinstein, H., and Schulten, K. Biophys. J. 1998, 74, 1622-1639
21. Tanaka, T. and Hidaka, H. J. Biol. Chem. 1980, 255, 11078-11080
22. Degrado, W. F. Adv. Protein Chem. 1988, 39, 51-124
23. Bachs, O., Agell, N., and Carafoli, E. Biochim. Biophys. Acta 1992, 1113, 259-270
24. Blumenthal, D. K., Takio, K., Edelman, A. M., Charbonneau, H., Titani, K., Walsh, K. A., and Krebs, E. G. Proc. Natl. Acad. Sci. U.S.A. 1985, 82, 3187-3191
25. Kataoka, M., Head, J. F., Seaton, B. A., and Engelman, D. M. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 6944-6948
26. Matsushima, N., Izumi, Y., Matsuo, T., Yoshino, H., Ueki, T., and Miyake, Y. J. Biochem. 1989, 105, 883-887
27. Seeholzer, S. H., Cohn, M., Putkey, J. A., Means, A. R., and Crespi, H. L. Proc. Natl. Acad. Sci. U.S.A. 1986, 83, 3634-3638
28. Zhu, M. M., Rempel, D. L., Zhao, J., Giblin, D. E., and Gross, M. L. Biochemistry 2003, 42, 15388-15397
29. Chapman, E. R., Alexander, K., Vorherr, T., Carafoli, E., and Storm, D. R. Biochemistry 1992, 31, 12819-12825
30. Scaloni, A., Miraglia, N., Orru, S., Amodeo, P., Motta, A., Marino, G., and Pucci, P. J. Mol. Biol. 1998, 277, 945-958
31. Schulz, D. M., Ihling, C., Clore, G. M., and Sinz, A. Biochemistry 2004, 43, 4703-4715
32. Steiner, R. F., Albaugh, S., Fenselau, C., Murphy, C., and Vestling, M. Anal. Biochem. 1991, 196, 120-125
33. Wong, J. W., Maleknia, S. D., and Downard, K. M. J. Am. Soc. Mass Spectrom. 2005, 16, 225-233
34. Yap, K. L., Kim, J., Truong, K., Sherman, M., Yuan, T., and Ikura, M. J. Struct. Funct. Genomics 2000, 1, 8-14
35. Heidorn, D. B., Seeger, P. A., Rokop, S. E., Blumenthal, D. K., Means, A. R., Crespi, H., and Trewhella, J. Biochemistry 1989, 28, 6757-6764
36. Ikura, M., Clore, G. M., Gronenborn, A. M., Zhu, G., Klee, C. B., and Bax, A. Science 1992, 256, 632-638
37. Wan, K. X., Vidavsky, I., and Gross, M. L. J. Am. Soc. Mass Spectrom. 2002, 13, 85-88
38. Hambly, D. and Gross, M. L. Int. J. Mass Spectrom. 2007, 259, 124-129
39. Sperry, J. B., Shi, X., Rempel, D. L., Nishimura, Y., Akashi, S., and Gross, M. L. Biochemistry 2008, 47, 1797-1807
40. Sharp, J. S. and Tomer, K. B. Biophys. J. 2007, 92, 1682-1692
41. Perkins, D. N., Pappin, D. J., Creasy, D. M., and Cottrell, J. S. Electrophoresis 1999, 20, 3551-3567
42. Neubert, H., Bonnert, T. P., Rumpel, K., Hunt, B. T., Henle, E. S., and James, I. T. J. Proteome Res. 2008, 7, 2270-2279
43. Gau, B. C., Sharp, J. S., Rempel, D. L., and Gross, M. L. Anal. Chem. 2009, 81
44. Xu, G., Kiselar, J., He, Q., and Chance, M. R. Anal. Chem. 2005, 77, 3029-3037
45. Boys, B. L., Kuprowski, M. C., Noel, J. J., and Konermann, L. Anal. Chem. 2009, 81, 4027-4034
46. Hambly, D. M. and Gross, M. L. Anal. Chem. 2009, 81, 7235-7242
47. Saladino, J., Liu, M., Live, D., and Sharp, J. S. J. Am. Soc. Mass Spectrom. 2009, 20, 1123-1126
48. Takamoto, K. and Chance, M. R. Annu. Rev. Biophys. Biomol. Struct. 2006, 35, 251-276
49. Zheng, X., Wintrode, P. L., and Chance, M. R. Structure 2008, 16, 38-51
50. Kamal, J. K. and Chance, M. R. Protein Sci. 2008, 17, 79-94