-
1
-
-
0030019094
-
Frequency of morphological phage descriptions in 1995
-
Ackermann, H. W. (1996). Frequency of morphological phage descriptions in 1995. Arch Virol 141, 209-218.
-
(1996)
Arch Virol
, vol.141
, pp. 209-218
-
-
Ackermann, H.W.1
-
2
-
-
33751059692
-
The marine viromes of four oceanic regions
-
Angly, F. E., Felts, B., Breitbart, M., Salamon, P., Edwards, R. A., Carlson, C., Chan, A. M., Haynes, M., Kelley, S. & other authors (2006). The marine viromes of four oceanic regions. PLoS Biol 4, e368.
-
(2006)
PLoS Biol
, vol.4
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
Salamon, P.4
Edwards, R.A.5
Carlson, C.6
Chan, A.M.7
Haynes, M.8
Kelley, S.9
-
3
-
-
34250220631
-
Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules
-
Brady, S. F. (2007). Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules. Nat Protoc 2, 1297-1305.
-
(2007)
Nat Protoc
, vol.2
, pp. 1297-1305
-
-
Brady, S.F.1
-
4
-
-
33847662974
-
Phage metagenomics
-
Casas, V. & Rohwer, F. (2007). Phage metagenomics. Methods Enzymol 421, 259-268.
-
(2007)
Methods Enzymol
, vol.421
, pp. 259-268
-
-
Casas, V.1
Rohwer, F.2
-
5
-
-
79952359922
-
Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences
-
Del Casale, A., Flanagan, P. V., Larkin, M. J., Allen, C. C. & Kulakov, L. A. (2011a). Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences. FEMS Microbiol Ecol 76, 100-108.
-
(2011)
FEMS Microbiol Ecol
, vol.76
, pp. 100-108
-
-
Del Casale, A.1
Flanagan, P.V.2
Larkin, M.J.3
Allen, C.C.4
Kulakov, L.A.5
-
6
-
-
79961084433
-
Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments
-
Del Casale, A., Flanagan, P. V., Larkin, M. J., Allen, C. C. R. & Kulakov, L. A. (2011b). Extent and variation of phage-borne bacterial 16S rRNA gene sequences in wastewater environments. Appl Environ Microbiol 77, 5529-5532.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 5529-5532
-
-
Del Casale, A.1
Flanagan, P.V.2
Larkin, M.J.3
Allen, C.C.R.4
Kulakov, L.A.5
-
7
-
-
79957518623
-
Differences between bacterial communities associated with the surface or tissue of Mediterranean sponge species
-
Gerçe, B., Schwartz, T., Syldatk, C. & Hausmann, R. (2011). Differences between bacterial communities associated with the surface or tissue of Mediterranean sponge species. Microb Ecol 61, 769-782.
-
(2011)
Microb Ecol
, vol.61
, pp. 769-782
-
-
Gerçe, B.1
Schwartz, T.2
Syldatk, C.3
Hausmann, R.4
-
8
-
-
38349191323
-
Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA
-
Ghosh, D., Roy, K., Williamson, K. E., White, D. C., Wommack, K. E., Sublette, K. L. & Radosevich, M. (2008). Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA. Appl Environ Microbiol 74, 495-502.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 495-502
-
-
Ghosh, D.1
Roy, K.2
Williamson, K.E.3
White, D.C.4
Wommack, K.E.5
Sublette, K.L.6
Radosevich, M.7
-
9
-
-
34250704324
-
An environmental genomics perspective on the diversity and function of marine sponge-associated microbiota
-
Grozdanov, L. & Hentschel, U. (2007). An environmental genomics perspective on the diversity and function of marine sponge-associated microbiota. Curr Opin Microbiol 10, 215-220.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 215-220
-
-
Grozdanov, L.1
Hentschel, U.2
-
10
-
-
33644942115
-
Marine sponges as microbial fermenters
-
Hentschel, U., Usher, K. M. & Taylor, M. W. (2006). Marine sponges as microbial fermenters. FEMS Microbiol Ecol 55, 167-177.
-
(2006)
FEMS Microbiol Ecol
, vol.55
, pp. 167-177
-
-
Hentschel, U.1
Usher, K.M.2
Taylor, M.W.3
-
11
-
-
77956987118
-
Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences
-
Huang, S., Wilhelm, S. W., Jiao, N. & Chen, F. (2010). Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences. ISME J 4, 1243-1251.
-
(2010)
ISME J
, vol.4
, pp. 1243-1251
-
-
Huang, S.1
Wilhelm, S.W.2
Jiao, N.3
Chen, F.4
-
12
-
-
84856579879
-
Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges
-
Huang, S., Wang, K., Jiao, N. & Chen, F. (2012). Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges. Environ Microbiol 14, 540-558.
-
(2012)
Environ Microbiol
, vol.14
, pp. 540-558
-
-
Huang, S.1
Wang, K.2
Jiao, N.3
Chen, F.4
-
13
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., Faulkner, G. & Hugenholtz, P. (2004). Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
14
-
-
84862486758
-
Pyrosequencing reveals diverse and distinct spongespecific microbial communities in sponges from a single geographical location in Irish waters
-
Jackson, S. A., Kennedy, J., Morrisey, J. P., O'Gara, F. & Dobson, A. D. W. (2012). Pyrosequencing reveals diverse and distinct spongespecific microbial communities in sponges from a single geographical location in Irish waters. Microb Ecol 64, 105-116.
-
(2012)
Microb Ecol
, vol.64
, pp. 105-116
-
-
Jackson, S.A.1
Kennedy, J.2
Morrisey, J.P.3
O'Gara, F.4
Dobson, A.D.W.5
-
15
-
-
44849090313
-
Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome
-
Kennedy, J., Codling, C. E., Jones, B. V., Dobson, A. D. & Marchesi, J. R. (2008). Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome. Environ Microbiol 10, 1888-1902.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1888-1902
-
-
Kennedy, J.1
Codling, C.E.2
Jones, B.V.3
Dobson, A.D.4
Marchesi, J.R.5
-
16
-
-
72949103741
-
New dimensions of the virus world discovered through metagenomics
-
Kristensen, D. M., Mushegian, A. R., Dolja, V. V. & Koonin, E. V. (2010). New dimensions of the virus world discovered through metagenomics. Trends Microbiol 18, 11-19.
-
(2010)
Trends Microbiol
, vol.18
, pp. 11-19
-
-
Kristensen, D.M.1
Mushegian, A.R.2
Dolja, V.V.3
Koonin, E.V.4
-
17
-
-
15444372597
-
Genomic analysis of bacteriophage PhiJL001: Insights into its interaction with a spongeassociated alpha-proteobacterium
-
Lohr, J. E., Chen, F. & Hill, R. T. (2005). Genomic analysis of bacteriophage PhiJL001: insights into its interaction with a spongeassociated alpha-proteobacterium. Appl Environ Microbiol 71, 1598-1609.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1598-1609
-
-
Lohr, J.E.1
Chen, F.2
Hill, R.T.3
-
18
-
-
33748713890
-
UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
-
Lozupone, C., Hamady, M. & Knight, R. (2006). UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7, 371.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 371
-
-
Lozupone, C.1
Hamady, M.2
Knight, R.3
-
19
-
-
0031937375
-
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
-
Marchesi, J. R., Sato, T., Weightman, A. J., Martin, T. A., Fry, J. C., Hiom, S. J., Dymock, D. & Wade, W. G. (1998). Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64, 795-799.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 795-799
-
-
Marchesi, J.R.1
Sato, T.2
Weightman, A.J.3
Martin, T.A.4
Fry, J.C.5
Hiom, S.J.6
Dymock, D.7
Wade, W.G.8
-
20
-
-
46149112822
-
Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf corticata by 16S rRNA, aprA, and amoA gene analysis
-
Meyer, B. & Kuever, J. (2008). Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf. corticata by 16S rRNA, aprA, and amoA gene analysis. Microb Ecol 56, 306-321.
-
(2008)
Microb Ecol
, vol.56
, pp. 306-321
-
-
Meyer, B.1
Kuever, J.2
-
21
-
-
77950555675
-
Census of the viral metagenome within an activated sludge microbial assemblage
-
Parsley, L. C., Consuegra, E. J., Thomas, S. J., Bhavsar, J., Land, A. M., Bhuiyan, N. N., Mazher, M. A., Waters, R. J., Wommack, K. E. & other authors (2010). Census of the viral metagenome within an activated sludge microbial assemblage. Appl Environ Microbiol 76, 2673-2677.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 2673-2677
-
-
Parsley, L.C.1
Consuegra, E.J.2
Thomas, S.J.3
Bhavsar, J.4
Land, A.M.5
Bhuiyan, N.N.6
Mazher, M.A.7
Waters, R.J.8
Wommack, K.E.9
-
22
-
-
70350482660
-
Roles of viruses in the environment
-
Rohwer, F., Prangishvili, D. & Lindell, D. (2009). Roles of viruses in the environment. Environ Microbiol 11, 2771-2774.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2771-2774
-
-
Rohwer, F.1
Prangishvili, D.2
Lindell, D.3
-
23
-
-
0004136246
-
-
3rd edn, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn, vol. 1. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(2001)
Molecular Cloning: A Laboratory Manual
, vol.1
-
-
Sambrook, J.1
Russell, D.W.2
-
24
-
-
0035315947
-
Method for host-independent detection of generalized transducing bacteriophages in natural habitats
-
Sander, M. & Schmieger, H. (2001). Method for host-independent detection of generalized transducing bacteriophages in natural habitats. Appl Environ Microbiol 67, 1490-1493.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1490-1493
-
-
Sander, M.1
Schmieger, H.2
-
25
-
-
25144506135
-
Viruses in the sea
-
Suttle, C. A. (2005). Viruses in the sea. Nature 437, 356-361.
-
(2005)
Nature
, vol.437
, pp. 356-361
-
-
Suttle, C.A.1
-
26
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle, C. A. (2007). Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5, 801-812.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
27
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
28
-
-
34250733462
-
Spongeassociated microorganisms: Evolution, ecology, and biotechnological potential
-
Taylor, M. W., Radax, R., Steger, D. & Wagner, M. (2007). Spongeassociated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71, 295-347.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 295-347
-
-
Taylor, M.W.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
29
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber, R. V., Haynes, M., Breitbart, M., Wegley, L. & Rohwer, F. (2009). Laboratory procedures to generate viral metagenomes. Nat Protoc 4, 470-483.
-
(2009)
Nat Protoc
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
Haynes, M.2
Breitbart, M.3
Wegley, L.4
Rohwer, F.5
-
30
-
-
80052206993
-
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries
-
Veesler, D. & Cambillau, C. (2011). A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol Mol Biol Rev 75, 423-433.
-
(2011)
Microbiol Mol Biol Rev
, vol.75
, pp. 423-433
-
-
Veesler, D.1
Cambillau, C.2
-
31
-
-
84856583756
-
Marine sponges and their microbial symbionts: Love and other relationships
-
Webster, N. S. & Taylor, M. W. (2012). Marine sponges and their microbial symbionts: love and other relationships. Environ Microbiol 14, 335-346.
-
(2012)
Environ Microbiol
, vol.14
, pp. 335-346
-
-
Webster, N.S.1
Taylor, M.W.2
-
32
-
-
33644606606
-
FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
-
Yu, Y., Breitbart, M., McNairnie, P. & Rohwer, F. (2006). FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 7, 57.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 57
-
-
Yu, Y.1
Breitbart, M.2
McNairnie, P.3
Rohwer, F.4
-
33
-
-
80052540333
-
Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems
-
Zinger, L., Amaral-Zettler, L. A., Fuhrman, J. A., Horner-Devine, M. C., Huse, S. M., Welch, D. B., Martiny, J. B., Sogin, M., Boetius, A. & Ramette, A. (2011). Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS ONE 6, e24570.
-
(2011)
PLoS ONE
, vol.6
-
-
Zinger, L.1
Amaral-Zettler, L.A.2
Fuhrman, J.A.3
Horner-Devine, M.C.4
Huse, S.M.5
Welch, D.B.6
Martiny, J.B.7
Sogin, M.8
Boetius, A.9
Ramette, A.10
|