메뉴 건너뛰기




Volumn 160, Issue 3, 2012, Pages 1420-1431

Effects of reduced chloroplast gene copy number on chloroplast gene expression in maize

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84868319446     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.112.204198     Document Type: Article
Times cited : (55)

References (49)
  • 1
    • 0028272427 scopus 로고
    • A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms
    • Barkan A, Walker M, Nolasco M, Johnson D (1994) A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 13: 3170-3181
    • (1994) EMBO J , vol.13 , pp. 3170-3181
    • Barkan, A.1    Walker, M.2    Nolasco, M.3    Johnson, D.4
  • 2
    • 0001355547 scopus 로고
    • Plastid transcription activity and DNA copy number increase early in barley chloroplast development
    • Baumgartner BJ, Rapp JC, Mullet JE (1989) Plastid transcription activity and DNA copy number increase early in barley chloroplast development. Plant Physiol 89: 1011-1018
    • (1989) Plant Physiol , vol.89 , pp. 1011-1018
    • Baumgartner, B.J.1    Rapp, J.C.2    Mullet, J.E.3
  • 3
    • 50249171238 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts
    • Beick S, Schmitz-Linneweber C, Williams-Carrier R, Jensen B, Barkan A (2008) The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol Cell Biol 28: 5337-5347
    • (2008) Mol Cell Biol , vol.28 , pp. 5337-5347
    • Beick, S.1    Schmitz-Linneweber, C.2    Williams-Carrier, R.3    Jensen, B.4    Barkan, A.5
  • 4
    • 0023359272 scopus 로고
    • Why do chloroplasts and mitochondria contain so many copies of their genome?
    • Bendich AJ (1987) Why do chloroplasts and mitochondria contain so many copies of their genome? Bioessays 6: 279-282
    • (1987) Bioessays , vol.6 , pp. 279-282
    • Bendich, A.J.1
  • 5
    • 3142719794 scopus 로고    scopus 로고
    • Circular chloroplast chromosomes: The grand illusion
    • Bendich AJ (2004) Circular chloroplast chromosomes: the grand illusion. Plant Cell 16: 1661-1666
    • (2004) Plant Cell , vol.16 , pp. 1661-1666
    • Bendich, A.J.1
  • 6
    • 33644876148 scopus 로고    scopus 로고
    • Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons
    • Christensen AC, Lyznik A, Mohammed S, Elowsky CG, Elo A, Yule R, Mackenzie SA (2005) Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons. Plant Cell 17: 2805-2816
    • (2005) Plant Cell , vol.17 , pp. 2805-2816
    • Christensen, A.C.1    Lyznik, A.2    Mohammed, S.3    Elowsky, C.G.4    Elo, A.5    Yule, R.6    Mackenzie, S.A.7
  • 8
    • 0036324267 scopus 로고    scopus 로고
    • Searching limiting steps in the expression of chloroplast-encoded proteins: Relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii
    • Eberhard S, Drapier D, Wollman FA (2002) Searching limiting steps in the expression of chloroplast-encoded proteins: relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii. Plant J 31: 149-160
    • (2002) Plant J , vol.31 , pp. 149-160
    • Eberhard, S.1    Drapier, D.2    Wollman, F.A.3
  • 9
    • 2342511519 scopus 로고    scopus 로고
    • Chloroplast development affects expression of phage-type RNA polymerases in barley leaves
    • Emanuel C, Weihe A, Graner A, Hess WR, Börner T (2004) Chloroplast development affects expression of phage-type RNA polymerases in barley leaves. Plant J 38: 460-472
    • (2004) Plant J , vol.38 , pp. 460-472
    • Emanuel, C.1    Weihe, A.2    Graner, A.3    Hess, W.R.4    Börner, T.5
  • 10
    • 0034811993 scopus 로고    scopus 로고
    • The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts
    • Felder S, Meierhoff K, Sane AP, Meurer J, Driemel C, Plücken H, Klaff P, Stein B, Bechtold N, Westhoff P (2001) The nucleus-encoded HCF107 gene of Arabidopsis provides a link between intercistronic RNA processing and the accumulation of translation-competent psbH transcripts in chloroplasts. Plant Cell 13: 2127-2141
    • (2001) Plant Cell , vol.13 , pp. 2127-2141
    • Felder, S.1    Meierhoff, K.2    Sane, A.P.3    Meurer, J.4    Driemel, C.5    Plücken, H.6    Klaff, P.7    Stein, B.8    Bechtold, N.9    Westhoff, P.10
  • 11
    • 79953234083 scopus 로고    scopus 로고
    • Chloroplast genomes of photosynthetic eukaryotes
    • Green BR (2011) Chloroplast genomes of photosynthetic eukaryotes. Plant J 66: 34-44
    • (2011) Plant J , vol.66 , pp. 34-44
    • Green, B.R.1
  • 12
    • 84859602756 scopus 로고    scopus 로고
    • RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression
    • Hammani K, Cook WB, Barkan A (2012) RNA binding and RNA remodeling activities of the half-a-tetratricopeptide (HAT) protein HCF107 underlie its effects on gene expression. Proc Natl Acad Sci USA 109: 5651-5656
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 5651-5656
    • Hammani, K.1    Cook, W.B.2    Barkan, A.3
  • 13
    • 0000196802 scopus 로고
    • Aberrations in plastid transcripts and deficiency of plastid DNA in striped and albino mutants in maize
    • Han C-D, Patrie W, Polacco M, Coe EH (1993) Aberrations in plastid transcripts and deficiency of plastid DNA in striped and albino mutants in maize. Planta 191: 552-563
    • (1993) Planta , vol.191 , pp. 552-563
    • Han, C.-D.1    Patrie, W.2    Polacco, M.3    Coe, E.H.4
  • 14
    • 0001600715 scopus 로고
    • Relationship between gene dosage and gene expression in the chloroplast of Chlamydomonas reinhardtii
    • Hosler JP, Wurtz EA, Harris EH, Gillham NW, Boynton JE (1989) Relationship between gene dosage and gene expression in the chloroplast of Chlamydomonas reinhardtii. Plant Physiol 91: 648-655
    • (1989) Plant Physiol , vol.91 , pp. 648-655
    • Hosler, J.P.1    Wurtz, E.A.2    Harris, E.H.3    Gillham, N.W.4    Boynton, J.E.5
  • 16
    • 79960896245 scopus 로고    scopus 로고
    • Distinguishing authentic mitochondrial and plastid DNAs from similar DNA sequences in the nucleus using the polymerase chain reaction
    • Kumar RA, Bendich AJ (2011) Distinguishing authentic mitochondrial and plastid DNAs from similar DNA sequences in the nucleus using the polymerase chain reaction. Curr Genet 57: 287-295
    • (2011) Curr Genet , vol.57 , pp. 287-295
    • Kumar, R.A.1    Bendich, A.J.2
  • 17
    • 0030766634 scopus 로고    scopus 로고
    • Fine mapping of replication origins (ori A and ori B) in Nicotiana tabacum chloroplast DNA
    • Kunnimalaiyaan M, Nielsen BL (1997) Fine mapping of replication origins (ori A and ori B) in Nicotiana tabacum chloroplast DNA. Nucleic Acids Res 25: 3681-3686
    • (1997) Nucleic Acids Res , vol.25 , pp. 3681-3686
    • Kunnimalaiyaan, M.1    Nielsen, B.L.2
  • 18
    • 84868335987 scopus 로고
    • Report of maize genetics cooperation stock center
    • Lambert RJ (1980) Report of maize genetics cooperation stock center. Maize Genetics Cooperation Newsletter 54: 131-135
    • (1980) Maize Genetics Cooperation Newsletter , vol.54 , pp. 131-135
    • Lambert, R.J.1
  • 19
    • 0000752533 scopus 로고
    • Plastid differentiation, acyl lipid, and fatty acid changes in developing green maize leaves
    • Leech RM, Rumsby MG, Thomson WW (1973) Plastid differentiation, acyl lipid, and fatty acid changes in developing green maize leaves. Plant Physiol 52: 240-245
    • (1973) Plant Physiol , vol.52 , pp. 240-245
    • Leech, R.M.1    Rumsby, M.G.2    Thomson, W.W.3
  • 20
    • 0036329026 scopus 로고    scopus 로고
    • Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries
    • Legen J, Kemp S, Krause K, Profanter B, Herrmann RG, Maier RM (2002) Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries. Plant J 31: 171-188
    • (2002) Plant J , vol.31 , pp. 171-188
    • Legen, J.1    Kemp, S.2    Krause, K.3    Profanter, B.4    Herrmann, R.G.5    Maier, R.M.6
  • 21
    • 2542590978 scopus 로고    scopus 로고
    • The nuclear factor HCF145 affects chloroplast psaA-psaB-rps14 transcript abundance in Arabidopsis thaliana
    • Lezhneva L, Meurer J (2004) The nuclear factor HCF145 affects chloroplast psaA-psaB-rps14 transcript abundance in Arabidopsis thaliana. Plant J 38: 740-753
    • (2004) Plant J , vol.38 , pp. 740-753
    • Lezhneva, L.1    Meurer, J.2
  • 22
    • 32444433857 scopus 로고    scopus 로고
    • Constancy of organellar genome copy numbers during leaf development and senescence in higher plants
    • Li W, Ruf S, Bock R (2006) Constancy of organellar genome copy numbers during leaf development and senescence in higher plants. Mol Genet Genomics 275: 185-192
    • (2006) Mol Genet Genomics , vol.275 , pp. 185-192
    • Li, W.1    Ruf, S.2    Bock, R.3
  • 24
    • 84855286345 scopus 로고    scopus 로고
    • Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: A new conceptual framework for nucleoid functions
    • Majeran W, Friso G, Asakura Y, Qu X, Huang M, Ponnala L, Watkins KP, Barkan A, van Wijk KJ (2012) Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions. Plant Physiol 158: 156-189
    • (2012) Plant Physiol , vol.158 , pp. 156-189
    • Majeran, W.1    Friso, G.2    Asakura, Y.3    Qu, X.4    Huang, M.5    Ponnala, L.6    Watkins, K.P.7    Barkan, A.8    van Wijk, K.J.9
  • 25
    • 0038457836 scopus 로고    scopus 로고
    • HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs
    • Meierhoff K, Felder S, Nakamura T, Bechtold N, Schuster G (2003) HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Plant Cell 15: 1480-1495
    • (2003) Plant Cell , vol.15 , pp. 1480-1495
    • Meierhoff, K.1    Felder, S.2    Nakamura, T.3    Bechtold, N.4    Schuster, G.5
  • 26
    • 9344270525 scopus 로고    scopus 로고
    • Changes in the structure of DNA molecules and the amount of DNA per plastid during chloroplast development in maize
    • Oldenburg DJ, Bendich AJ (2004a) Changes in the structure of DNA molecules and the amount of DNA per plastid during chloroplast development in maize. J Mol Biol 344: 1311-1330
    • (2004) J Mol Biol , vol.344 , pp. 1311-1330
    • Oldenburg, D.J.1    Bendich, A.J.2
  • 27
    • 0347123538 scopus 로고    scopus 로고
    • Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms
    • Oldenburg DJ, Bendich AJ (2004b) Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms. J Mol Biol 335: 953-970
    • (2004) J Mol Biol , vol.335 , pp. 953-970
    • Oldenburg, D.J.1    Bendich, A.J.2
  • 28
    • 0025318647 scopus 로고
    • The Mu1 maize transposable element induces tissue-specific aberrant splicing and polyadenylation in two Adh1 mutants
    • Ortiz DF, Strommer JN (1990) The Mu1 maize transposable element induces tissue-specific aberrant splicing and polyadenylation in two Adh1 mutants. Mol Cell Biol 10: 2090-2095
    • (1990) Mol Cell Biol , vol.10 , pp. 2090-2095
    • Ortiz, D.F.1    Strommer, J.N.2
  • 29
    • 79955988819 scopus 로고    scopus 로고
    • Divergent roles for the two PolI-like organelle DNA polymerases of Arabidopsis
    • Parent JS, Lepage E, Brisson N (2011) Divergent roles for the two PolI-like organelle DNA polymerases of Arabidopsis. Plant Physiol 156: 254-262
    • (2011) Plant Physiol , vol.156 , pp. 254-262
    • Parent, J.S.1    Lepage, E.2    Brisson, N.3
  • 30
    • 67651171227 scopus 로고    scopus 로고
    • Site-specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts
    • Pfalz J, Bayraktar OA, Prikryl J, Barkan A (2009) Site-specific binding of a PPR protein defines and stabilizes 59 and 39 mRNA termini in chloroplasts. EMBO J 28: 2042-2052
    • (2009) EMBO J , vol.28 , pp. 2042-2052
    • Pfalz, J.1    Bayraktar, O.A.2    Prikryl, J.3    Barkan, A.4
  • 31
    • 52649136147 scopus 로고    scopus 로고
    • A member of the Whirly family is a multifunctional RNA-and DNA-binding protein that is essential for chloroplast biogenesis
    • Prikryl J, Watkins KP, Friso G, vanWijk KJ, Barkan A (2008) A member of the Whirly family is a multifunctional RNA-and DNA-binding protein that is essential for chloroplast biogenesis. Nucleic Acids Res 36: 5152-5165
    • (2008) Nucleic Acids Res , vol.36 , pp. 5152-5165
    • Prikryl, J.1    Watkins, K.P.2    Friso, G.3    vanWijk, K.J.4    Barkan, A.5
  • 32
    • 3142774899 scopus 로고    scopus 로고
    • The demise of chloroplast DNA in Arabidopsis
    • Rowan BA, Oldenburg DJ, Bendich AJ (2004) The demise of chloroplast DNA in Arabidopsis. Curr Genet 46: 176-181
    • (2004) Curr Genet , vol.46 , pp. 176-181
    • Rowan, B.A.1    Oldenburg, D.J.2    Bendich, A.J.3
  • 33
    • 60349097605 scopus 로고    scopus 로고
    • A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis
    • Rowan BA, Oldenburg DJ, Bendich AJ (2009) A multiple-method approach reveals a declining amount of chloroplast DNA during development in Arabidopsis. BMC Plant Biol 9: 3
    • (2009) BMC Plant Biol , vol.9 , pp. 3
    • Rowan, B.A.1    Oldenburg, D.J.2    Bendich, A.J.3
  • 34
    • 84860147226 scopus 로고    scopus 로고
    • Short non-coding RNA fragments accumulating in chloroplasts: Footprints of RNA binding proteins?
    • Ruwe H, Schmitz-Linneweber C (2012) Short non-coding RNA fragments accumulating in chloroplasts: footprints of RNA binding proteins? Nucleic Acids Res 40: 3106-3116
    • (2012) Nucleic Acids Res , vol.40 , pp. 3106-3116
    • Ruwe, H.1    Schmitz-Linneweber, C.2
  • 35
    • 33750444943 scopus 로고    scopus 로고
    • Linear molecules of tobacco ptDNA end at known replication origins and additional loci
    • Scharff LB, Koop HU (2006) Linear molecules of tobacco ptDNA end at known replication origins and additional loci. Plant Mol Biol 62: 611-621
    • (2006) Plant Mol Biol , vol.62 , pp. 611-621
    • Scharff, L.B.1    Koop, H.U.2
  • 36
    • 33744487886 scopus 로고    scopus 로고
    • Changes in chloroplast DNA during development in tobacco, Medicago truncatula, pea, and maize
    • Shaver JM, Oldenburg DJ, Bendich AJ (2006) Changes in chloroplast DNA during development in tobacco, Medicago truncatula, pea, and maize. Planta 224: 72-82
    • (2006) Planta , vol.224 , pp. 72-82
    • Shaver, J.M.1    Oldenburg, D.J.2    Bendich, A.J.3
  • 37
    • 2642512446 scopus 로고    scopus 로고
    • Genetics and genomics of chloroplast biogenesis: Maize as a model system
    • Stern DB, Hanson MR, Barkan A (2004) Genetics and genomics of chloroplast biogenesis: maize as a model system. Trends Plant Sci 9: 293-301
    • (2004) Trends Plant Sci , vol.9 , pp. 293-301
    • Stern, D.B.1    Hanson, M.R.2    Barkan, A.3
  • 38
    • 80051920146 scopus 로고    scopus 로고
    • Recruitment of a ribosomal release factor for light-and stress-dependent regulation of petB transcript stability in Arabidopsis chloroplasts
    • Stoppel R, Lezhneva L, Schwenkert S, Torabi S, Felder S, Meierhoff K, Westhoff P, Meurer J (2011) Recruitment of a ribosomal release factor for light-and stress-dependent regulation of petB transcript stability in Arabidopsis chloroplasts. Plant Cell 23: 2680-2695
    • (2011) Plant Cell , vol.23 , pp. 2680-2695
    • Stoppel, R.1    Lezhneva, L.2    Schwenkert, S.3    Torabi, S.4    Felder, S.5    Meierhoff, K.6    Westhoff, P.7    Meurer, J.8
  • 39
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
    • Timmis JN, AyliffeMA, Huang CY, Martin W (2004) Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 5: 123-135
    • (2004) Nat Rev Genet , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 40
    • 0041693974 scopus 로고    scopus 로고
    • Comparison of plastid DNA replication in different cells and tissues of the rice plant
    • Wang Y, Saitoh Y, Sato T, Hidaka S, Tsutsumi K (2003) Comparison of plastid DNA replication in different cells and tissues of the rice plant. Plant Mol Biol 52: 905-913
    • (2003) Plant Mol Biol , vol.52 , pp. 905-913
    • Wang, Y.1    Saitoh, Y.2    Sato, T.3    Hidaka, S.4    Tsutsumi, K.5
  • 42
    • 0344237359 scopus 로고    scopus 로고
    • A chloroplast-localized PPR protein required for plastid ribosome accumulation
    • Williams PM, Barkan A (2003) A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J 36: 675-686
    • (2003) Plant J , vol.36 , pp. 675-686
    • Williams, P.M.1    Barkan, A.2
  • 43
    • 77954251724 scopus 로고    scopus 로고
    • Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy mutator lines of maize
    • Williams-Carrier R, Stiffler N, Belcher S, Kroeger T, Stern DB, Monde RA, Coalter R, Barkan A (2010) Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy mutator lines of maize. Plant J 63: 167-177
    • (2010) Plant J , vol.63 , pp. 167-177
    • Williams-Carrier, R.1    Stiffler, N.2    Belcher, S.3    Kroeger, T.4    Stern, D.B.5    Monde, R.A.6    Coalter, R.7    Barkan, A.8
  • 44
    • 1842483066 scopus 로고    scopus 로고
    • PPR motifs of the nucleusencoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis
    • Yamazaki H, Tasaka M, Shikanai T (2004) PPR motifs of the nucleusencoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis. Plant J 38: 152-163
    • (2004) Plant J , vol.38 , pp. 152-163
    • Yamazaki, H.1    Tasaka, M.2    Shikanai, T.3
  • 45
    • 84860153569 scopus 로고    scopus 로고
    • Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts
    • Zhelyazkova P, Hammani K, Rojas M, Voelker R, Vargas-Suárez M, Börner T, Barkan A (2012a) Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts. Nucleic Acids Res 40: 3092-3105
    • (2012) Nucleic Acids Res , vol.40 , pp. 3092-3105
    • Zhelyazkova, P.1    Hammani, K.2    Rojas, M.3    Voelker, R.4    Vargas-Suárez, M.5    Börner, T.6    Barkan, A.7
  • 46
    • 84857757047 scopus 로고    scopus 로고
    • The primary transcriptome of barley chloroplasts: Numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase
    • Zhelyazkova P, Sharma CM, Förstner KU, Liere K, Vogel J, Börner T (2012b) The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase. Plant Cell 24: 123-136
    • (2012) Plant Cell , vol.24 , pp. 123-136
    • Zhelyazkova, P.1    Sharma, C.M.2    Förstner, K.U.3    Liere, K.4    Vogel, J.5    Börner, T.6
  • 47
    • 79957437619 scopus 로고    scopus 로고
    • Independent effects of leaf growth and light on the development of the plastid and its DNA content in Zea species
    • Zheng Q, Oldenburg DJ, Bendich AJ (2011) Independent effects of leaf growth and light on the development of the plastid and its DNA content in Zea species. J Exp Bot 62: 2715-2730
    • (2011) J Exp Bot , vol.62 , pp. 2715-2730
    • Zheng, Q.1    Oldenburg, D.J.2    Bendich, A.J.3
  • 49
    • 34248398376 scopus 로고    scopus 로고
    • From seedling to mature plant: Arabidopsis plastidial genome copy number, RNA accumulation and transcription are differentially regulated during leaf development
    • Zoschke R, Liere K, Börner T (2007) From seedling to mature plant: Arabidopsis plastidial genome copy number, RNA accumulation and transcription are differentially regulated during leaf development. Plant J 50: 710-722
    • (2007) Plant J , vol.50 , pp. 710-722
    • Zoschke, R.1    Liere, K.2    Börner, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.