Using double-stranded DNA probes to promote specificity in target capture

Colloids and Surfaces B: Biointerfaces

Volumn 102, Issue , 2013, Pages 884-890

  Baker, Bryan A ^a   Mahmoudabadi, Gita ^b   Milam, Valeria T ^a,b  

^a Georgia Institute of Technology   (United States)

^b GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Colloidal particle; DNA; Double stranded probe; Microsphere; Oligonucleotide; RNA

Indexed keywords

A-CENTER; COLLOIDAL PARTICLE; DOUBLE STRANDED DNA; ELEVATED TEMPERATURE; FALSE POSITIVE; FREE END; NUCLEIC ACID DETECTION; TARGET CAPTURE; TARGET DISCRIMINATION;

DNA; MICROSPHERES; OLIGONUCLEOTIDES; PROBES; RNA;

DNA SEQUENCES;

DOUBLE STRANDED DNA; MICROSPHERE; RNA;

ARTICLE; BINDING AFFINITY; DNA HYBRIDIZATION; DNA PROBE; DNA STRAND; FLOW CYTOMETRY; IMMOBILIZATION; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

DNA PROBES; FLOW CYTOMETRY; MICROSPHERES; RNA;

EID: 84868256743     PISSN: 09277765     EISSN: 18734367     Source Type: Journal    
DOI: 10.1016/j.colsurfb.2012.09.020     Document Type: Article

References (46)

1. Santangelo P.J., Nix B., Tsourkas A., Bao G. Nucleic Acids Res. 2004, 32:e57.
2. Tsourkas A., Behlke M.A., Rose S.D., Bao G. Nucleic Acids Res. 2003, 31:1319.
3. Ramsay G. Nat. Biotechnol. 1998, 16:40.
4. Pease A.C., Solas D., Sullivan E.J., Cronin M.T., Holmes C.P., Fodor S.P.A. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:5022.
5. Schena M., Shalon D., Davis R.W., Brown P.O. Science 1995, 270:467.
6. Hacia J.G., Brody L.C., Chee M.S., Fodor S.P.A., Collins F.S. Nat. Genet. 1996, 14:441.
7. Cattani-Scholz A., Pedone D., Blobner F., Abstreiter G., Schwartz J., Tornow M., Andruzzi L. Biomacromolecules 2009, 10:489.
8. Feng C.L., Zhang Z., Förch R., Knoll W., Vancso G.J., Schönherr H. Biomacromolecules 2005, 6:3243.
9. Dunbar S.A., Zee C.A.V., Oliver K.G., Karem K.L., Jacobson J.W. J. Microbiol. Methods 2003, 53:245.
10. Lu J., et al. Nature 2005, 435:834.
11. Dunbar S., Jacobsen J.W. Salmonella: Methods and Protocols 2007, vol. 394:1. Humana Press, Inc., Totowa, NJ.
12. Dunbar S.A. Clin. Chim. Acta 2006, 363:71.
13. Zhang Y., Milam V.T., Graves D.J., Hammer D.A. Biophys. J. 2006, 90:4128.
14. Lipshutz R.J., Fodor S.P.A., Gingeras T.R., Lockhart D.J. Nat. Genet. 1999, 21:20.
15. Vary C.P.H. Nucleic Acids Res. 1987, 15:6883.
16. Wolf S.F., Haines L., Fisch J., Kremsky J.N., Dougherty J.P., Jacobs K. Nucleic Acids Res. 1987, 15:2911.
17. Li Q., Luan G., Guo Q., Liang J. Nucleic Acids Res. 2002, 30:e5.
18. Mo Z.H., Yang X.C., Guo K.P., Wen Z.Y. Anal. Bioanal. Chem. 2007, 389:493.
19. Zhang D.Y., Chen S.X., Yin P. Nat. Chem. 2012, 4:208.
20. Zangmeister R.A., Tarlov M.J. Anal. Chem. 2004, 76:3655.
21. Homann M., Nedbal W., Sczakiel G. Nucleic Acids Res. 1996, 24:4395.
22. Reynaldo L.P., Vologodskii A.V., Neri B.P., Lyamichev V.I. J. Mol. Biol. 2000, 297:511.
23. Seferos D.S., Giljohann D.A., Hill H.D., Prigodich A.E., Mirkin C.A. J. Am. Chem. Soc. 2007, 129:15477.
24. Liu L., Dong X., Lian W., Peng X., Liu Z., He Z., Wang Q. Anal. Chem. 2010, 82:1381.
25. Cram L.S. Methods Cell Sci. 2002, 24:1.
26. Tison C.K., Milam V.T. Biomacromolecules 2008, 9:2468.
27. Fulton R.J., McDade R.L., Smith P.L., Kienker L.J., Kettman J.R. Clin. Chem. 1997, 43:1749.
28. Iannone M.A., Taylor J.D., Chen J., Li M.-S., Rivers P., Slentz-Kesler K.A., Weiner M.P. Cytometry 2000, 39:131.
29. Kim A.J., Biancaniello P.L., Crocker J.C. Langmuir 2006, 22:1991.
30. Tison C.K., Milam V.T. Langmuir 2007, 23:9728.
31. Baker B.A., Milam V.T. Nucleic Acids Res. 2011, 39:e99.
32. Tison C.K., Milam V.T. Soft Matter 2010, 6:4446.
33. Zhang D.Y., Winfree E. J. Am. Chem. Soc. 2009, 131:17303.
34. Seelig G., Soloveichik D., Zhang D.Y., Winfree E. Science 2006, 314:1585.
35. SantaLucia J. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:1460.
36. Sugimoto N., Nakano S., Yoneyama M., Honda K. Nucleic Acids Res. 1996, 24:4501.
37. Sugimoto N., Nakano S., Katoh M., Matsumura A., Nakamuta H., Ohmichi T., Yoneyama M., Sasaki M. Biochemistry 1995, 34:11211.
38. Peyret N., Seneviratne P.A., Allawi H.T., SantaLucia J. Biochemistry 1999, 38:3468.
39. Bommarito S., Peyret N., SantaLucia J. Nucleic Acids Res. 2000, 28:1929.
40. SantaLucia J., Hicks D. Annu. Rev. Biophys. Biomol. Struct. 2004, 33:415.
41. Baker B.A., Milam V.T. Langmuir 2010, 26:9818.
42. De Meyts P., Roth J., Neville D.M., Gavin J.R., Lesniak M.A. Biochem. Biophys. Res. Commun. 1973, 55:154.
43. Lesnik E.A., Freier S.M. Biochemistry 1995, 34:10807.
44. Wang A.H.-J., Fuji S., van Boom J.H., van der Marel G.A., van Boeckel S.A.A., Rich A. Nature 1982, 299:601.
45. Cheatham T.E., Kollman P.A. J. Am. Chem. Soc. 1997, 119:4805.
46. Noy A., Perez A., Marquez M., Luque F.J., Orozco M. J. Am. Chem. Soc. 2005, 127:4910.