Monitoring alkane degradation by single biobrick integration to an optimal cellular framework

ACS Synthetic Biology

Volumn 1, Issue 2, 2012, Pages 60-64

  Santala, Suvi ^a   Karp, Matti ^a   Santala, Ville ^a  

^a TAMPERE UNIVERSITY OF TECHNOLOGY   (Finland)

Author keywords

Acinetobacter baylyi ADP1; Alkane degradation; Bioluminescence; Synthetic biology

Indexed keywords

ADP1 PROTEIN; ALKANAL MONOOXYGENASE (FMN LINKED); ALKANE; BACTERIAL LUCIFERASE LUXAB; BACTERIAL PROTEIN; HYDROCARBON; UNCLASSIFIED DRUG;

ACINETOBACTER BAYLYI; ARTICLE; BIOTECHNOLOGY; DEGRADATION; METABOLISM; NONHUMAN; PRIORITY JOURNAL;

ACINETOBACTER; ALKANES; GENETIC ENGINEERING; KINETICS; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; SYNTHETIC BIOLOGY;

ACINETOBACTER BAYLYI; BACTERIA (MICROORGANISMS);

EID: 84868243959     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb2000066     Document Type: Article

References (21)

1. Endy, D. (2005) Foundations for engineering biology. Nature 438, 449-453. (Pubitemid 41742010)
2. Shetty, R. P., Endy, D., and Knight, T. F. Jr. (2008) Engineering BioBrick vectors from BioBrick parts. J. Biol. Eng. 2, 5.
3. Metzgar, D., Bacher, J. M., Pezo, V., Reader, J., Doring, V., Schimmel, P., Marliere, P., and de Crecy-Lagard, V. (2004) Acinetobacter sp. ADP1: An ideal model organism for genetic analysis and genome engineering. Nucleic Acids Res. 32, 5780-5790. (Pubitemid 39619161)
4. Santala, S., Efimova, E., Kivinen, V., Larjo, A., Aho, T., Karp, M., and Santala, V. (2011) Improved triacylglycerol production in Acinetobacter baylyi ADP1 by metabolic engineering. Microb. Cell Fact. 10, 36.
5. Young, D. M., Parke, D., and Ornston, L. N. (2005) Opportunities for genetic investigation afforded by Acinetobacter baylyi, a nutritionally versatile bacterial species that is highly competent for natural transformation. Annu. Rev. Microbiol. 59, 519-551. (Pubitemid 41507441)
6. Barbe, V., Vallenet, D., Fonknechten, N., Kreimeyer, A., Oztas, S., Labarre, L., Cruveiller, S., Robert, C., Duprat, S., Wincker, P., Ornston, L. N., Weissenbach, J., Marliere, P., Cohen, G. N., and Medigue, C. Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res. 32, 5766-5779.
7. Durot, M., Le Fevre, F., de Berardinis, V., Kreimeyer, A., Vallenet, D., Combe, C., Smidtas, S., Salanoubat, M., Weissenbach, J., and Schachter, V. (2008) Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data. BMC Syst. Biol. 2, 85.
8. de Berardinis, V., Vallenet, D., Castelli, V., Besnard, M., Pinet, A., Cruaud, C., Samair, S., Lechaplais, C., Gyapay, G., Richez, C., Durot, M., Kreimeyer, A., Le Fevre, F., Schachter, V., Pezo, V., Doring, V., Scarpelli, C., Medigue, C., Cohen, G. N., Marliere, P., Salanoubat, M., and Weissenbach, J. (2008) A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1. Mol. Syst. Biol. 4, 174.
9. Ishige, T., Tani, A., Sakai, Y., and Kato, N. (2000) Long-chain aldehyde dehydrogenase that participates in n-alkane utilization and wax ester synthesis in Acinetobacter sp. strain M-1. Appl. Environ. Microbiol. 66, 3481-3486. (Pubitemid 30624592)
10. Jung, J., Baek, J. H., and Park, W. (2010) Complete genome sequence of the diesel-degrading Acinetobacter sp. strain DR1. J. Bacteriol. 192, 4794-4795.
11. Ratajczak, A., Geissdorfer, W., and Hillen, W. (1998) Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases. Appl. Environ. Microbiol. 64, 1175-1179. (Pubitemid 28188368)
12. Hanson, K. G., Nigam, A., Kapadia, M., and Desai, A. J. (1997) Bioremediation of crude oil contamination with Acinetobacter sp. A3. Curr. Microbiol. 35, 191-193. (Pubitemid 27347277)
13. Mishra, S., Sarma, P. M., and Lal, B. (2004) Crude oil degradation efficiency of a recombinant Acinetobacter baumannii strain and its survival in crude oil-contaminated soil microcosm. FEMS Microbiol. Lett. 235, 323-331. (Pubitemid 38746779)
14. Popp, N., Schlomann, M., and Mau, M. (2006) Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils. Microbiol. (Reading, U. K.) 152, 3291-3304. (Pubitemid 44734333)
15. Menezes Bento, F., de Oliveira Camargo, F. A., Okeke, B. C., and Frankenberger, W. T. Jr. (2005) Diversity of biosurfactant producing microorganisms isolated from soils contaminated with diesel oil. Microbiol. Res. 160, 249-255. (Pubitemid 40793844)
16. Li, Z., and Meighen, E. A. (1994) The turnover of bacterial luciferase is limited by a slow decomposition of the ternary enzymeproduct complex of luciferase, FMN, and fatty acid. J. Biol. Chem. 269, 6640-6644. (Pubitemid 24191047)
17. Minak-Bernero, V., Bare, R. E., Haith, C. E., and Grossman, M. J. (2004) Detection of alkanes, alcohols, and aldehydes using bioluminescence. Biotechnol. Bioeng. 87, 170-177. (Pubitemid 38879746)
18. Sticher, P., Jaspers, M. C., Stemmler, K., Harms, H., Zehnder, A. J., and van der Meer, J. R. (1997) Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples. Appl. Environ. Microbiol. 63, 4053-4060. (Pubitemid 27411370)
19. Calvo, C., Manzanera, M., Silva-Castro, G. A., Uad, I., and Gonzalez-Lopez, J. (2009) Application of bioemulsifiers in soil oil bioremediation processes. Future prospects. Sci. Total Environ. 407, 3634-3640.
20. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1990) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
21. Frackman, S., Anhalt, M., and Nealson, K. H. (1990) Cloning, organization, and expression of the bioluminescence genes of Xenorhabdus luminescens. J. Bacteriol. 172, 5767-5773.