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Volumn 1, Issue SUPPL.60, 2012, Pages

Direct bisulfite sequencing for examination of DNA methylation with gene and nucleotide resolution from brain tissues

Author keywords

Bisulfite sequencing; Central nervous system; DNA methylation; Epigenetics

Indexed keywords

BISULFITE; CYTOSINE; NUCLEOTIDE; HYDROGEN SULFITE; SULFITE;

EID: 84868087624     PISSN: 19348584     EISSN: 19348576     Source Type: Journal    
DOI: 10.1002/0471142301.ns0724s60     Document Type: Article
Times cited : (45)

References (40)
  • 2
    • 33750043186 scopus 로고    scopus 로고
    • A dominant function of IKK/NF-kappaB signaling in global lipopolysaccharide-induced gene expression
    • Carayol, N., Chen, J., Yang, F., Jin, T., Jin, L., States, D., and Wang, C.Y. 2006. A dominant function of IKK/NF-kappaB signaling in global lipopolysaccharide-induced gene expression. J. Biol. Chem. 281:31142-31151.
    • (2006) J. Biol. Chem. , vol.281 , pp. 31142-31151
    • Carayol, N.1    Chen, J.2    Yang, F.3    Jin, T.4    Jin, L.5    States, D.6    Wang, C.Y.7
  • 3
    • 77951125407 scopus 로고    scopus 로고
    • BS Seeker: Precise mapping for bisulfite sequencing
    • Chen, P.Y., Cokus, S.J., and Pellegrini, M. 2010. BS Seeker: Precise mapping for bisulfite sequencing. BMC Bioinformatics 11:203.
    • (2010) BMC Bioinformatics , vol.11 , pp. 203
    • Chen, P.Y.1    Cokus, S.J.2    Pellegrini, M.3
  • 5
    • 44649113118 scopus 로고    scopus 로고
    • DNA methylation profiling of pseudogene-parental gene pairs and two gene families
    • Cortese, R., Krispin, M., Weiss, G., Berlin, K., and Eckhardt, F. 2008. DNA methylation profiling of pseudogene-parental gene pairs and two gene families. Genomics 91:492-502.
    • (2008) Genomics , vol.91 , pp. 492-502
    • Cortese, R.1    Krispin, M.2    Weiss, G.3    Berlin, K.4    Eckhardt, F.5
  • 6
    • 77958580776 scopus 로고    scopus 로고
    • DNA methylation andmemory formation
    • Day, J.J. and Sweatt, J.D. 2010. DNA methylation andmemory formation. Nat. Neurosci. 13:1319-1323.
    • (2010) Nat. Neurosci. , vol.13 , pp. 1319-1323
    • Day, J.J.1    Sweatt, J.D.2
  • 7
    • 77950187447 scopus 로고    scopus 로고
    • Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons
    • Feng, J., Zhou, Y., Campbell, S.L., Le, T., Li, E., Sweatt, J.D., Silva, A.J., and Fan, G. 2010. Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons. Nat. Neurosci. 13:423-430.
    • (2010) Nat. Neurosci. , vol.13 , pp. 423-430
    • Feng, J.1    Zhou, Y.2    Campbell, S.L.3    Le, T.4    Li, E.5    Sweatt, J.D.6    Silva, A.J.7    Fan, G.8
  • 9
    • 0030571050 scopus 로고    scopus 로고
    • Transient expression of the mitogen-activated protein kinase phosphatase MKP-1 (3CH134/ERP1) in the rat brain after limbic epilepsy
    • Gass, P., Eckhardt, A.,Schroder, H., Bravo, R., and Herdegen, T. 1996. Transient expression of the mitogen-activated protein kinase phosphatase MKP-1 (3CH134/ERP1) in the rat brain after limbic epilepsy.Brain Res. Mol. BrainRes. 41:74-80.
    • (1996) Brain Res. Mol. BrainRes. , vol.41 , pp. 74-80
    • Gass, P.1    Eckhardt, A.2    Schroder, H.3    Bravo, R.4    Herdegen, T.5
  • 10
    • 58749087364 scopus 로고    scopus 로고
    • Errors in the bisulfite conversion of DNA: Modulating inappropriate- and failed-conversion frequencies
    • Genereux, D.P., Johnson, W.C., Burden, A.F., Stoger, R., and Laird, C.D. 2008. Errors in the bisulfite conversion of DNA: Modulating inappropriate- and failed-conversion frequencies. Nucleic Acids Res. 36:e150.
    • (2008) Nucleic Acids Res , vol.36
    • Genereux, D.P.1    Johnson, W.C.2    Burden, A.F.3    Stoger, R.4    Laird, C.D.5
  • 12
    • 80051712275 scopus 로고    scopus 로고
    • Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond
    • Guo, J.U., Su, Y., Zhong, C., Ming, G.L., and Song, H. 2011b. Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond. Cell Cycle 10:2662-2668.
    • (2011) Cell Cycle , vol.10 , pp. 2662-2668
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 13
    • 79955538247 scopus 로고    scopus 로고
    • Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain
    • Guo, J.U., Su, Y., Zhong, C.,Ming, G.L., and Song, H. 2011c. Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain. Cell 145:423-434.
    • (2011) Cell , vol.145 , pp. 423-434
    • Guo, J.U.1    Su, Y.2    Zhong, C.3    Ming, G.L.4    Song, H.5
  • 16
    • 0016439429 scopus 로고
    • DNA modificationmechanisms and gene activity during development
    • Holliday, R. and Pugh, J.E. 1975. DNA modificationmechanisms and gene activity during development. Science 187:226-232.
    • (1975) Science , vol.187 , pp. 226-232
    • Holliday, R.1    Pugh, J.E.2
  • 17
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: the mark and its mediators
    • Klose, R.J. and Bird, A.P. 2006. Genomic DNA methylation: the mark and its mediators. Trends Biochem. Sci. 31:89-97.
    • (2006) Trends Biochem. Sci. , vol.31 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 19
    • 0029892470 scopus 로고    scopus 로고
    • Physiology of the neurotrophins
    • Lewin, G.R. and Barde, Y.A. 1996. Physiology of the neurotrophins. Annu. Rev. Neurosci. 19:289-317.
    • (1996) Annu. Rev. Neurosci. , vol.19 , pp. 289-317
    • Lewin, G.R.1    Barde, Y.A.2
  • 20
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: Genome-wide sequencing of cytosine methylation
    • Lister, R. and Ecker, J.R. 2009. Finding the fifth base: Genome-wide sequencing of cytosine methylation. Genome Res. 19:959-966.
    • (2009) Genome Res , vol.19 , pp. 959-966
    • Lister, R.1    Ecker, J.R.2
  • 22
    • 79957999131 scopus 로고    scopus 로고
    • Epigenetic gene regulation in the adult mammalian brain: Multiple roles in memory formation
    • Lubin, F.D. 2011. Epigenetic gene regulation in the adult mammalian brain: Multiple roles in memory formation. Neurobiol. Learn. Mem. 96:68-78.
    • (2011) Neurobiol. Learn. Mem. , vol.96 , pp. 68-78
    • Lubin, F.D.1
  • 23
    • 54849426071 scopus 로고    scopus 로고
    • Epigenetic regulation of BDNF gene transcription in the consolidation of fear memory
    • Lubin, F.D., Roth, T.L., and Sweatt, J.D. 2008. Epigenetic regulation of BDNF gene transcription in the consolidation of fear memory. J. Neurosci. 28:10576-10586.
    • (2008) J. Neurosci. , vol.28 , pp. 10576-10586
    • Lubin, F.D.1    Roth, T.L.2    Sweatt, J.D.3
  • 24
    • 66849119061 scopus 로고    scopus 로고
    • DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation
    • Ma, D.K., Guo, J.U., Ming, G.L., and Song, H. 2009a. DNA excision repair proteins and Gadd45 as molecular players for active DNA demethylation. Cell Cycle 8:1526-1531.
    • (2009) Cell Cycle , vol.8 , pp. 1526-1531
    • Ma, D.K.1    Guo, J.U.2    Ming, G.L.3    Song, H.4
  • 26
    • 77958605856 scopus 로고    scopus 로고
    • Epigenetic choreographers of neurogenesis in the adult mammalian brain
    • Ma, D.K., Marchetto, M.C., Guo, J.U., Ming, G.L., Gage, F.H., and Song, H. 2010. Epigenetic choreographers of neurogenesis in the adult mammalian brain. Nat. Neurosci. 13:1338-1344.
    • (2010) Nat. Neurosci. , vol.13 , pp. 1338-1344
    • Ma, D.K.1    Marchetto, M.C.2    Guo, J.U.3    Ming, G.L.4    Gage, F.H.5    Song, H.6
  • 27
    • 33847614418 scopus 로고    scopus 로고
    • Covalent modification of DNA regulates memory formation
    • Miller, C.A. and Sweatt, J.D. 2007. Covalent modification of DNA regulates memory formation. Neuron 53:857-869.
    • (2007) Neuron , vol.53 , pp. 857-869
    • Miller, C.A.1    Sweatt, J.D.2
  • 29
    • 38349044361 scopus 로고    scopus 로고
    • Activity-dependent suppression of miniature neurotransmission through the regulation of DNA methylation
    • Nelson, E.D., Kavalali, E.T., and Monteggia, L.M. 2008. Activity-dependent suppression of miniature neurotransmission through the regulation of DNA methylation. J. Neurosci. 28:395-406.
    • (2008) J. Neurosci. , vol.28 , pp. 395-406
    • Nelson, E.D.1    Kavalali, E.T.2    Monteggia, L.M.3
  • 31
    • 71749102589 scopus 로고    scopus 로고
    • Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences inDNAmethylation
    • Reed, K., Poulin, M.L., Yan, L., and Parissenti, A.M. 2010. Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences inDNAmethylation. Anal. Biochem. 397:96-106.
    • (2010) Anal. Biochem. , vol.397 , pp. 96-106
    • Reed, K.1    Poulin, M.L.2    Yan, L.3    Parissenti, A.M.4
  • 32
    • 0035153070 scopus 로고    scopus 로고
    • Pyrosequencing sheds light on DNA sequencing
    • Ronaghi, M. 2001. Pyrosequencing sheds light on DNA sequencing. Genome Res. 11:3-11.
    • (2001) Genome Res , vol.11 , pp. 3-11
    • Ronaghi, M.1
  • 33
    • 63449085750 scopus 로고    scopus 로고
    • Lasting epigenetic influence of early-life adversity on the BDNF gene
    • Roth, T.L., Lubin, F.D., Funk, A.J., and Sweatt, J.D. 2009. Lasting epigenetic influence of early-life adversity on the BDNF gene. Biol. Psychiatry 65:760-769.
    • (2009) Biol. Psychiatry , vol.65 , pp. 760-769
    • Roth, T.L.1    Lubin, F.D.2    Funk, A.J.3    Sweatt, J.D.4
  • 34
    • 33845877732 scopus 로고    scopus 로고
    • Defining an epigenetic code
    • Turner, B.M. 2007. Defining an epigenetic code. Nat. Cell Biol. 9:2-6.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 2-6
    • Turner, B.M.1
  • 35
    • 79954573165 scopus 로고    scopus 로고
    • Chronic high-fat diet drives postnatal epigenetic regulation of mu-opioid receptor in the brain
    • Vucetic, Z., Kimmel, J., and Reyes, T.M. 2011. Chronic high-fat diet drives postnatal epigenetic regulation of mu-opioid receptor in the brain. Neuropsychopharmacology 36:1199-1206.
    • (2011) Neuropsychopharmacology , vol.36 , pp. 1199-1206
    • Vucetic, Z.1    Kimmel, J.2    Reyes, T.M.3
  • 36
    • 77957258099 scopus 로고    scopus 로고
    • Maternal high-fat diet alters methylation and gene expression of dopamine and opioid-related genes
    • Vucetic, Z., Kimmel, J., Totoki, K., Hollenbeck, E., and Reyes, T.M. 2010. Maternal high-fat diet alters methylation and gene expression of dopamine and opioid-related genes. Endocrinology 151:4756-4764.
    • (2010) Endocrinology , vol.151 , pp. 4756-4764
    • Vucetic, Z.1    Kimmel, J.2    Totoki, K.3    Hollenbeck, E.4    Reyes, T.M.5
  • 38
    • 28044436691 scopus 로고    scopus 로고
    • Reversal of maternal programming of stress responses in adult offspring through methyl supplementation: Altering epigenetic marking later in life
    • Weaver, I.C., Champagne, F.A., Brown, S.E., Dymov, S., Sharma, S., Meaney, M.J., and Szyf, M. 2005. Reversal of maternal programming of stress responses in adult offspring through methyl supplementation: Altering epigenetic marking later in life. J. Neurosci. 25:11045-11054.
    • (2005) J. Neurosci. , vol.25 , pp. 11045-11054
    • Weaver, I.C.1    Champagne, F.A.2    Brown, S.E.3    Dymov, S.4    Sharma, S.5    Meaney, M.J.6    Szyf, M.7
  • 39
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber, M., Davies, J.J., Wittig, D., Oakeley, E.J., Haase, M., Lam, W.L., and Schubeler, D. 2005. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37:853-862.
    • (2005) Nat. Genet. , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.