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Volumn 2012, Issue , 2012, Pages

Imaging mRNA expression in live cells via PNA·DNA strand displacement-activated probes

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; FLUORESCEIN; INDUCIBLE NITRIC OXIDE SYNTHASE; NANOPARTICLE;

EID: 84867921611     PISSN: 20900201     EISSN: 2090021X     Source Type: Journal    
DOI: 10.1155/2012/962652     Document Type: Article
Times cited : (13)

References (33)
  • 1
    • 65449131152 scopus 로고    scopus 로고
    • Imaging intracellular RNA distribution and dynamics in living cells
    • 2-s2.0-65449131152 10.1038/nmeth.1321
    • Tyagi S., Imaging intracellular RNA distribution and dynamics in living cells. Nature Methods 2009 6 5 331 338 2-s2.0-65449131152 10.1038/nmeth.1321
    • (2009) Nature Methods , vol.6 , Issue.5 , pp. 331-338
    • Tyagi, S.1
  • 2
    • 67651151407 scopus 로고    scopus 로고
    • Fluorescent probes for live-cell RNA detection
    • 2-s2.0-67651151407 10.1146/annurev-bioeng-061008-124920
    • Bao G., Won J. R., Tsourkas A., Fluorescent probes for live-cell RNA detection. Annual Review of Biomedical Engineering 2009 11 25 47 2-s2.0-67651151407 10.1146/annurev-bioeng-061008-124920
    • (2009) Annual Review of Biomedical Engineering , vol.11 , pp. 25-47
    • Bao, G.1    Won, J.R.2    Tsourkas, A.3
  • 3
    • 83055184268 scopus 로고    scopus 로고
    • Imaging of RNA in live cells
    • 10.1016/j.cbpa.2011.10.006
    • Armitage B. A., Imaging of RNA in live cells. Current Opinion in Chemical Biology 2011 15 6 806 812 10.1016/j.cbpa.2011.10.006
    • (2011) Current Opinion in Chemical Biology , vol.15 , Issue.6 , pp. 806-812
    • Armitage, B.A.1
  • 4
    • 47249136607 scopus 로고    scopus 로고
    • Efficient cytosolic delivery of molecular beacon conjugates and flow cytometric analysis of target RNA
    • DOI 10.1093/nar/gkn331
    • Chen A. K., Behlke M. A., Tsourkas A., Efficient cytosolic delivery of molecular beacon conjugates and flow cytometric analysis of target RNA. Nucleic Acids Research 2008 36 12, article e69 2-s2.0-47249136607 10.1093/nar/gkn331 (Pubitemid 351984837)
    • (2008) Nucleic Acids Research , vol.36 , Issue.12
    • Chen, A.K.1    Behlke, M.A.2    Tsourkas, A.3
  • 5
    • 33645158637 scopus 로고    scopus 로고
    • Nanostructured probes for RNA detection in living cells
    • 2-s2.0-33645158637 10.1007/s10439-005-9003-6
    • Santangelo P., Nitin N., Bao G., Nanostructured probes for RNA detection in living cells. Annals of Biomedical Engineering 2006 34 1 39 50 2-s2.0-33645158637 10.1007/s10439-005-9003-6
    • (2006) Annals of Biomedical Engineering , vol.34 , Issue.1 , pp. 39-50
    • Santangelo, P.1    Nitin, N.2    Bao, G.3
  • 6
    • 77955698528 scopus 로고    scopus 로고
    • Binary probes for nucleic acid analysis
    • 2-s2.0-77955698528 10.1021/cr900323b
    • Kolpashchikov D. M., Binary probes for nucleic acid analysis. Chemical Reviews 2010 110 8 4709 4723 2-s2.0-77955698528 10.1021/cr900323b
    • (2010) Chemical Reviews , vol.110 , Issue.8 , pp. 4709-4723
    • Kolpashchikov, D.M.1
  • 7
    • 48949116125 scopus 로고    scopus 로고
    • Molecular beacons: An optimal multifunctional biological probe
    • 2-s2.0-48949116125 10.1016/j.bbrc.2008.05.038
    • Li Y., Zhou X., Ye D., Molecular beacons: an optimal multifunctional biological probe. Biochemical and Biophysical Research Communications 2008 373 4 457 461 2-s2.0-48949116125 10.1016/j.bbrc.2008.05.038
    • (2008) Biochemical and Biophysical Research Communications , vol.373 , Issue.4 , pp. 457-461
    • Li, Y.1    Zhou, X.2    Ye, D.3
  • 8
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • 2-s2.0-0029065917
    • Livak K. J., Flood S. J. A., Marmaro J., Giusti W., Deetz K., Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods and Applications 1995 4 6 357 362 2-s2.0-0029065917
    • (1995) PCR Methods and Applications , vol.4 , Issue.6 , pp. 357-362
    • Livak, K.J.1    Flood, S.J.A.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 9
    • 0037134940 scopus 로고    scopus 로고
    • Intramolecular dimers: A new strategy to flourescence quenching in dual-labeled oligonucleotide probes
    • DOI 10.1021/ja025678o
    • Johansson M. K., Fidder H., Dick D., Cook R. M., Intramolecular dimers: a new strategy to flourescence quenching in dual-labeled oligonucleotide probes. Journal of the American Chemical Society 2002 124 24 6950 6956 2-s2.0-0037134940 10.1021/ja025678o (Pubitemid 34633598)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.24 , pp. 6950-6956
    • Johansson, M.K.1    Fidder, H.2    Dick, D.3    Cook, R.M.4
  • 10
    • 0022892517 scopus 로고
    • Strand displacement applied to assays with nucleic acid probes
    • Ellwood M. S., Collins M., Fritsch E. F., Strand displacement applied to assays with nucleic acid probes. Clinical Chemistry 1986 32 9 1631 1636 2-s2.0-0022892517 (Pubitemid 17020559)
    • (1986) Clinical Chemistry , vol.32 , Issue.9 , pp. 1631-1636
    • Ellwood, M.S.1    Collins, M.2    Fritsch, E.F.3
  • 11
    • 0024784534 scopus 로고
    • Solution-phase detection of polynucleotides using interacting fluorescent labels and competitive hybridization
    • DOI 10.1016/0003-2697(89)90473-9
    • Morrison L. E., Halder T. C., Stols L. M., Solution-phase detection of polynucleotides using interacting fluorescent labels and competitive hybridization. Analytical Biochemistry 1989 183 2 231 244 2-s2.0-0024784534 10.1016/0003-2697(89)90473-9 (Pubitemid 20016253)
    • (1989) Analytical Biochemistry , vol.183 , Issue.2 , pp. 231-244
    • Morrison, L.E.1    Halder, T.C.2    Stols, L.M.3
  • 12
    • 18744432001 scopus 로고    scopus 로고
    • A new class of homogeneous nucleic acid probes based on specific displacement hybridization
    • 2-s2.0-18744432001
    • Li Q., Luan G., Guo Q., Liang J., A new class of homogeneous nucleic acid probes based on specific displacement hybridization. Nucleic Acids Research 2002 30 2 E5 2-s2.0-18744432001
    • (2002) Nucleic Acids Research , vol.30 , Issue.2
    • Li, Q.1    Luan, G.2    Guo, Q.3    Liang, J.4
  • 13
    • 72249110882 scopus 로고    scopus 로고
    • Control of DNA strand displacement kinetics using toehold exchange
    • 2-s2.0-72249110882 10.1021/ja906987s
    • Zhang D. Y., Winfree E., Control of DNA strand displacement kinetics using toehold exchange. Journal of the American Chemical Society 2009 131 47 17303 17314 2-s2.0-72249110882 10.1021/ja906987s
    • (2009) Journal of the American Chemical Society , vol.131 , Issue.47 , pp. 17303-17314
    • Zhang, D.Y.1    Winfree, E.2
  • 14
  • 15
    • 67649211943 scopus 로고    scopus 로고
    • Optical antisense tumor targeting in vivo with an improved fluorescent DNA duplex probe
    • 2-s2.0-67649211943 10.1021/bc9000933
    • Liang M., Liu X., Cheng D., Nakamura K., Wang Y., Dou S., Liu G., Rusckowski M., Hnatowich D. J., Optical antisense tumor targeting in vivo with an improved fluorescent DNA duplex probe. Bioconjugate Chemistry 2009 20 6 1223 1227 2-s2.0-67649211943 10.1021/bc9000933
    • (2009) Bioconjugate Chemistry , vol.20 , Issue.6 , pp. 1223-1227
    • Liang, M.1    Liu, X.2    Cheng, D.3    Nakamura, K.4    Wang, Y.5    Dou, S.6    Liu, G.7    Rusckowski, M.8    Hnatowich, D.J.9
  • 16
    • 37849040758 scopus 로고    scopus 로고
    • Nano-flares: Probes for transfection and mRNA detection in living cells
    • 2-s2.0-37849040758 10.1021/ja0776529
    • Seferos D. S., Giljohann D. A., Hill H. D., Prigodich A. E., Mirkin C. A., Nano-flares: probes for transfection and mRNA detection in living cells. Journal of the American Chemical Society 2007 129 50 15477 15479 2-s2.0-37849040758 10.1021/ja0776529
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.50 , pp. 15477-15479
    • Seferos, D.S.1    Giljohann, D.A.2    Hill, H.D.3    Prigodich, A.E.4    Mirkin, C.A.5
  • 17
    • 33744820016 scopus 로고    scopus 로고
    • Peptide nucleic acid (PNA) - A review
    • DOI 10.1002/jctb.1505
    • Shakeel S., Karim S., Ali A., Peptide nucleic acid (PNA)a review. Journal of Chemical Technology and Biotechnology 2006 81 6 892 899 2-s2.0-33744820016 10.1002/jctb.1505 (Pubitemid 43833602)
    • (2006) Journal of Chemical Technology and Biotechnology , vol.81 , Issue.6 , pp. 892-899
    • Shakeel, S.1    Karim, S.2    Ali, A.3
  • 18
    • 77951198765 scopus 로고    scopus 로고
    • Peptide Nucleic Acids (PNA) in chemical biology and drug discovery
    • 2-s2.0-77951198765 10.1002/cbdv.201000005
    • Nielsen P. E., Peptide Nucleic Acids (PNA) in chemical biology and drug discovery. Chemistry and Biodiversity 2010 7 4 786 804 2-s2.0-77951198765 10.1002/cbdv.201000005
    • (2010) Chemistry and Biodiversity , vol.7 , Issue.4 , pp. 786-804
    • Nielsen, P.E.1
  • 19
    • 64649089237 scopus 로고    scopus 로고
    • Cationic shell-cross-linked knedel-Like (cSCK) nanoparticles for highly efficient PNA delivery
    • 2-s2.0-64649089237 10.1021/mp800199w
    • Fang H., Zhang K., Shen G., Wooley K. L., Taylor J. S. A., Cationic shell-cross-linked knedel-Like (cSCK) nanoparticles for highly efficient PNA delivery. Molecular Pharmaceutics 2009 6 2 615 626 2-s2.0-64649089237 10.1021/mp800199w
    • (2009) Molecular Pharmaceutics , vol.6 , Issue.2 , pp. 615-626
    • Fang, H.1    Zhang, K.2    Shen, G.3    Wooley, K.L.4    Taylor, J.S.A.5
  • 20
    • 69249211285 scopus 로고    scopus 로고
    • Well-defined cationic shell crosslinked nanoparticles for efficient delivery of DNA or peptide nucleic acids
    • 2-s2.0-69249211285 10.1513/pats.200902-010AW
    • Zhang K., Fang H., Shen G., Taylor J. S. A., Wooley K. L., Well-defined cationic shell crosslinked nanoparticles for efficient delivery of DNA or peptide nucleic acids. Proceedings of the American Thoracic Society 2009 6 5 450 457 2-s2.0-69249211285 10.1513/pats.200902-010AW
    • (2009) Proceedings of the American Thoracic Society , vol.6 , Issue.5 , pp. 450-457
    • Zhang, K.1    Fang, H.2    Shen, G.3    Taylor, J.S.A.4    Wooley, K.L.5
  • 21
    • 2542455472 scopus 로고    scopus 로고
    • INOS-mediated nitric oxide production and its regulation
    • DOI 10.1016/j.lfs.2003.10.042, PII S0024320504002887
    • Aktan F., iNOS-mediated nitric oxide production and its regulation. Life Sciences 2004 75 6 639 653 2-s2.0-2542455472 10.1016/j.lfs.2003.10.042 (Pubitemid 38686696)
    • (2004) Life Sciences , vol.75 , Issue.6 , pp. 639-653
    • Aktan, F.1
  • 22
    • 77954624383 scopus 로고    scopus 로고
    • Regulation of the expression of inducible nitric oxide synthase
    • 2-s2.0-77954624383 10.1016/j.niox.2010.04.007
    • Pautz A., Art J., Hahn S., Nowag S., Voss C., Kleinert H., Regulation of the expression of inducible nitric oxide synthase. Nitric Oxide 2010 23 2 75 93 2-s2.0-77954624383 10.1016/j.niox.2010.04.007
    • (2010) Nitric Oxide , vol.23 , Issue.2 , pp. 75-93
    • Pautz, A.1    Art, J.2    Hahn, S.3    Nowag, S.4    Voss, C.5    Kleinert, H.6
  • 23
    • 77953644238 scopus 로고    scopus 로고
    • Native mRNA antisense-accessible sites library for the selection of antisense oligonucleotides, PNAs, and siRNAs
    • 2-s2.0-77953644238 10.1261/rna.1940610
    • Fang H., Shen Y., Taylor J. S., Native mRNA antisense-accessible sites library for the selection of antisense oligonucleotides, PNAs, and siRNAs. RNA 2010 16 7 1429 1435 2-s2.0-77953644238 10.1261/rna.1940610
    • (2010) RNA , vol.16 , Issue.7 , pp. 1429-1435
    • Fang, H.1    Shen, Y.2    Taylor, J.S.3
  • 24
    • 57549102453 scopus 로고    scopus 로고
    • Cationic shell-crosslinked knedel-like nanoparticles for highly efficient gene and oligonucleotide transfection of mammalian cells
    • 2-s2.0-57549102453 10.1016/j.biomaterials.2008.10.057
    • Zhang K., Fang H., Wang Z., Taylor J. S. A., Wooley K. L., Cationic shell-crosslinked knedel-like nanoparticles for highly efficient gene and oligonucleotide transfection of mammalian cells. Biomaterials 2009 30 5 968 977 2-s2.0-57549102453 10.1016/j.biomaterials.2008.10.057
    • (2009) Biomaterials , vol.30 , Issue.5 , pp. 968-977
    • Zhang, K.1    Fang, H.2    Wang, Z.3    Taylor, J.S.A.4    Wooley, K.L.5
  • 25
    • 29244434992 scopus 로고    scopus 로고
    • Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells
    • DOI 10.1093/nar/gki968
    • Fang H., Yue X., Li X., Taylor J. S., Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells. Nucleic Acids Research 2005 33 21 6700 6711 2-s2.0-29244434992 10.1093/nar/gki968 (Pubitemid 41830478)
    • (2005) Nucleic Acids Research , vol.33 , Issue.21 , pp. 6700-6711
    • Fang, H.1    Yue, X.2    Li, X.3    Taylor, J.-S.4
  • 26
    • 84858718533 scopus 로고    scopus 로고
    • Dual peptide nucleic acid- and peptide-functionalized shell cross-linked nanoparticles designed to target mRNA toward the diagnosis and treatment of acute lung injury
    • 10.1021/bc200629f
    • Shrestha R., Shen Y., Pollack K. A., Taylor J. S., Wooley K. L., Dual peptide nucleic acid- and peptide-functionalized shell cross-linked nanoparticles designed to target mRNA toward the diagnosis and treatment of acute lung injury. Bioconjugate Chemistry 2012 23 3 574 585 10.1021/bc200629f
    • (2012) Bioconjugate Chemistry , vol.23 , Issue.3 , pp. 574-585
    • Shrestha, R.1    Shen, Y.2    Pollack, K.A.3    Taylor, J.S.4    Wooley, K.L.5
  • 28
    • 0030871285 scopus 로고    scopus 로고
    • A closed tube format for amplification and detection of DNA based on energy transfer
    • DOI 10.1093/nar/25.12.2516
    • Nazarenko I. A., Bhatnagar S. K., Hohman R. J., A closed tube format for amplification and detection of DNA based on energy transfer. Nucleic Acids Research 1997 25 12 2516 2521 2-s2.0-0030871285 10.1093/nar/25.12.2516 (Pubitemid 27303715)
    • (1997) Nucleic Acids Research , vol.25 , Issue.12 , pp. 2516-2521
    • Nazarenko, I.A.1    Bhatnagar, S.K.2    Hohman, R.J.3
  • 29
    • 0036567249 scopus 로고    scopus 로고
    • Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent properties of conjugated dyes
    • Nazarenko I., Pires R., Lowe B., Obaidy M., Rashtchian A., Effect of primary and secondary structure of oligodeoxyribonucleotides on the fluorescent properties of conjugated dyes. Nucleic Acids Research 2002 30 9 2089 2095 2-s2.0-0036567249 (Pubitemid 34537608)
    • (2002) Nucleic Acids Research , vol.30 , Issue.9 , pp. 2089-2095
    • Nazarenko, I.1    Pires, R.2    Lowe, B.3    Obaidy, M.4    Rashtchian, A.5
  • 30
    • 0141885264 scopus 로고    scopus 로고
    • Antisense imaging: And miles to go before we sleep?
    • DOI 10.1002/jcb.10641
    • Lewis M. R., Jia F., Antisense imaging: and miles to go before we sleep? Journal of Cellular Biochemistry 2003 90 3 464 472 2-s2.0-0141885264 10.1002/jcb.10641 (Pubitemid 37243693)
    • (2003) Journal of Cellular Biochemistry , vol.90 , Issue.3 , pp. 464-472
    • Lewis, M.R.1    Jia, F.2
  • 31
    • 0031024858 scopus 로고    scopus 로고
    • Differences in nitric oxide synthase activity in a macrophage-like cell line, RAW264.7 cells, treated with lipopolysaccharide (LPS) in the presence or absence of interferon-γ (IFN-γ): Possible heterogeneity of iNOS activity
    • Noda T., Amano F., Differences in nitric oxide synthase activity in a macrophage-like cell line, RAW264.7 cells, treated with lipopolysaccharide (LPS) in the presence or absence of interferon- γ (IFN- γ): possible heterogeneity of iNOS activity. Journal of Biochemistry 1997 121 1 38 46 2-s2.0-0031024858 (Pubitemid 27068272)
    • (1997) Journal of Biochemistry , vol.121 , Issue.1 , pp. 38-46
    • Noda, T.1    Amano, F.2
  • 32
    • 84856730988 scopus 로고    scopus 로고
    • Macrophages mediate lung inflammation in a mouse model of ischemic acute kidney injury
    • Altmann C., Andres-Hernando A., McMahan R. H., Macrophages mediate lung inflammation in a mouse model of ischemic acute kidney injury. American Journal of Renal Physiology 2012 302 4 F421 F432
    • (2012) American Journal of Renal Physiology , vol.302 , Issue.4
    • Altmann, C.1    Andres-Hernando, A.2    McMahan, R.H.3
  • 33
    • 70349083410 scopus 로고    scopus 로고
    • Microarray analysis of cytoplasmic versus whole cell RNA reveals a considerable number of missed and false positive mRNAs
    • 2-s2.0-70349083410 10.1261/rna.1677409
    • Trask H. W., Cowper-Sal-Lari R., Sartor M. A., Gui J., Heath C. V., Renuka J., Higgins A. J., Andrews P., Korc M., Moore J. H., Tomlinson C. R., Microarray analysis of cytoplasmic versus whole cell RNA reveals a considerable number of missed and false positive mRNAs. RNA 2009 15 10 1917 1928 2-s2.0-70349083410 10.1261/rna.1677409
    • (2009) RNA , vol.15 , Issue.10 , pp. 1917-1928
    • Trask, H.W.1    Cowper-Sal-Lari, R.2    Sartor, M.A.3    Gui, J.4    Heath, C.V.5    Renuka, J.6    Higgins, A.J.7    Andrews, P.8    Korc, M.9    Moore, J.H.10    Tomlinson, C.R.11


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