-
1
-
-
34548257820
-
Immediate-early and delayed primary response genes are distinct in function and genomic architecture
-
Tullai J.W., et al. Immediate-early and delayed primary response genes are distinct in function and genomic architecture. J. Biol. Chem. 2007, 282:23981-23995.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 23981-23995
-
-
Tullai, J.W.1
-
2
-
-
60749124122
-
The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules
-
Hao S., Baltimore D. The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules. Nat. Immunol. 2009, 10:281-288.
-
(2009)
Nat. Immunol.
, vol.10
, pp. 281-288
-
-
Hao, S.1
Baltimore, D.2
-
3
-
-
40949123747
-
TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes
-
Yarilina A., Park-Min K.-H., Antoniv T., Hu X., Ivashkiv L.B. TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes. Nat. Immunol. 2008, 9:378-387.
-
(2008)
Nat. Immunol.
, vol.9
, pp. 378-387
-
-
Yarilina, A.1
Park-Min, K.-H.2
Antoniv, T.3
Hu, X.4
Ivashkiv, L.B.5
-
4
-
-
18644376284
-
IRF3 mediates a TLR3/TLR4-specific antiviral gene program
-
Doyle S., et al. IRF3 mediates a TLR3/TLR4-specific antiviral gene program. Immunity 2002, 17:251-263.
-
(2002)
Immunity
, vol.17
, pp. 251-263
-
-
Doyle, S.1
-
5
-
-
33847076849
-
Chromatin modifications and their function
-
Kouzarides T. Chromatin modifications and their function. Cell 2007, 128:693-705.
-
(2007)
Cell
, vol.128
, pp. 693-705
-
-
Kouzarides, T.1
-
6
-
-
59949103192
-
High-resolution human core-promoter prediction with CoreBoost_HM
-
Wang X., Xuan Z., Zhao X., Li Y., Zhang M.Q. High-resolution human core-promoter prediction with CoreBoost_HM. Genome Res. 2009, 19:266-275.
-
(2009)
Genome Res.
, vol.19
, pp. 266-275
-
-
Wang, X.1
Xuan, Z.2
Zhao, X.3
Li, Y.4
Zhang, M.Q.5
-
7
-
-
77649246145
-
Histone modification levels are predictive for gene expression
-
Karlic R., Chung H.R., Lasserre J., Vlahovicek K., Vingron M. Histone modification levels are predictive for gene expression. Proc. Natl. Acad. Sci. U. S. A. 2010, 107:2926-2931.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 2926-2931
-
-
Karlic, R.1
Chung, H.R.2
Lasserre, J.3
Vlahovicek, K.4
Vingron, M.5
-
8
-
-
33750488431
-
The genomic landscape of histone modifications in human T cells
-
Roh T.Y., Cuddapah S., Cui K., Zhao K. The genomic landscape of histone modifications in human T cells. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:15782-15787.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 15782-15787
-
-
Roh, T.Y.1
Cuddapah, S.2
Cui, K.3
Zhao, K.4
-
9
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G., et al. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 2007, 1:299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
-
10
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
11
-
-
34147149312
-
A developmental view of microRNA function
-
Zhao Y., Srivastava D. A developmental view of microRNA function. Trends Biochem. Sci. 2007, 32:189-197.
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 189-197
-
-
Zhao, Y.1
Srivastava, D.2
-
12
-
-
77953304802
-
Adenosine 2B receptor expression is post-transcriptionally regulated by microRNA
-
Kolachala V.L., et al. Adenosine 2B receptor expression is post-transcriptionally regulated by microRNA. J. Biol. Chem. 2010, 285:18184-18190.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 18184-18190
-
-
Kolachala, V.L.1
-
13
-
-
84856366992
-
MiR-25 targets TNF-related apoptosis inducing ligand (TRAIL) death receptor-4 and promotes apoptosis resistance in cholangiocarcinoma
-
Razumilava N., et al. miR-25 targets TNF-related apoptosis inducing ligand (TRAIL) death receptor-4 and promotes apoptosis resistance in cholangiocarcinoma. Hepatology 2012, 55:465-475.
-
(2012)
Hepatology
, vol.55
, pp. 465-475
-
-
Razumilava, N.1
-
14
-
-
73949113629
-
Cutting edge: TNF-induced microRNAs regulate TNF-induced expression of E-selectin and intercellular adhesion molecule-1 on human endothelial cells: feedback control of inflammation
-
Suarez Y., Wang C., Manes T.D., Pober J.S. Cutting edge: TNF-induced microRNAs regulate TNF-induced expression of E-selectin and intercellular adhesion molecule-1 on human endothelial cells: feedback control of inflammation. J. Immunol. 2010, 184:21-25.
-
(2010)
J. Immunol.
, vol.184
, pp. 21-25
-
-
Suarez, Y.1
Wang, C.2
Manes, T.D.3
Pober, J.S.4
-
15
-
-
0142105387
-
Genetic analysis of NF-kappaB/Rel transcription factors defines functional specificities
-
Hoffmann A., Leung T.H., Baltimore D. Genetic analysis of NF-kappaB/Rel transcription factors defines functional specificities. EMBO J. 2003, 22:5530-5539.
-
(2003)
EMBO J.
, vol.22
, pp. 5530-5539
-
-
Hoffmann, A.1
Leung, T.H.2
Baltimore, D.3
-
16
-
-
70849129503
-
A wave of nascent transcription on activated human genes
-
Wada Y., et al. A wave of nascent transcription on activated human genes. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:18357-18361.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 18357-18361
-
-
Wada, Y.1
-
17
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection
-
Li C., Wong W.H. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl. Acad. Sci. U. S. A. 2001, 98:31-36.
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
19
-
-
75549091651
-
ENCODE whole-genome data in the UCSC Genome Browser
-
Rosenbloom K.R., et al. ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Res. 2010, 38:D620-D625.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Rosenbloom, K.R.1
-
20
-
-
78651320424
-
The UCSC Genome Browser database: update 2011
-
Fujita P.A., et al. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 2011, 39:D876-D882.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Fujita, P.A.1
-
21
-
-
0029960055
-
TRANSFAC: a database on transcription factors and their DNA binding sites
-
Wingender E., Dietze P., Karas H., Knuppel R. TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res. 1996, 24:238-241.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 238-241
-
-
Wingender, E.1
Dietze, P.2
Karas, H.3
Knuppel, R.4
-
22
-
-
13844275301
-
Similarity of position frequency matrices for transcription factor binding sites
-
Schones D.E., Sumazin P., Zhang M.Q. Similarity of position frequency matrices for transcription factor binding sites. Bioinformatics 2005, 21:307-313.
-
(2005)
Bioinformatics
, vol.21
, pp. 307-313
-
-
Schones, D.E.1
Sumazin, P.2
Zhang, M.Q.3
-
23
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang da W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
24
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
Huang da W., Sherman B.T., Lempicki R.A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 2009, 37:1-13.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang da, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
25
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis B.P., Burge C.B., Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120:15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
26
-
-
77957883572
-
Gene regulation by nucleosome positioning
-
Bai L., Morozov A.V. Gene regulation by nucleosome positioning. Trends Genet. 2010, 26:476-483.
-
(2010)
Trends Genet.
, vol.26
, pp. 476-483
-
-
Bai, L.1
Morozov, A.V.2
-
27
-
-
33747500567
-
A genomic code for nucleosome positioning
-
Segal E., et al. A genomic code for nucleosome positioning. Nature 2006, 442:772-778.
-
(2006)
Nature
, vol.442
, pp. 772-778
-
-
Segal, E.1
-
28
-
-
32044439558
-
Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response
-
Ramirez-Carrozzi V.R., et al. Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response. Genes Dev. 2006, 20:282-296.
-
(2006)
Genes Dev.
, vol.20
, pp. 282-296
-
-
Ramirez-Carrozzi, V.R.1
-
29
-
-
77951920690
-
C-Myc regulates transcriptional pause release
-
Rahl P.B., et al. c-Myc regulates transcriptional pause release. Cell 2010, 141:432-445.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
-
30
-
-
20444478655
-
Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling
-
Tian B., Nowak D.E., Jamaluddin M., Wang S., Brasier A.R. Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling. J. Biol. Chem. 2005, 280:17435-17448.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 17435-17448
-
-
Tian, B.1
Nowak, D.E.2
Jamaluddin, M.3
Wang, S.4
Brasier, A.R.5
-
31
-
-
0026095564
-
Differential induction of primary-response (TIS) genes in PC12 pheochromocytoma cells and the unresponsive variant PC12nnr5
-
Altin J.G., et al. Differential induction of primary-response (TIS) genes in PC12 pheochromocytoma cells and the unresponsive variant PC12nnr5. J. Biol. Chem. 1991, 266:5401-5406.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 5401-5406
-
-
Altin, J.G.1
-
32
-
-
0031972479
-
Serum- and polypeptide growth factor-inducible gene expression in mouse fibroblasts
-
Winkles J.A. Serum- and polypeptide growth factor-inducible gene expression in mouse fibroblasts. Prog. Nucleic Acid Res. Mol. Biol. 1998, 58:41-78.
-
(1998)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.58
, pp. 41-78
-
-
Winkles, J.A.1
|