The Enzymology of alanine aminotransferase (AlaAT) isoforms from Hordeum vulgare and other organisms, and the HvAlaAT crystal structure

Archives of Biochemistry and Biophysics

Volumn 528, Issue 1, 2012, Pages 90-101

  Duff, Stephen M G ^a   Rydel, Timothy J ^a   McClerren, Amanda L ^a   Zhang, Wenlan ^a,b   Li, Jimmy Y ^a,b   Sturman, Eric J ^a   Halls, Coralie ^a   Chen, Songyang ^a   Zeng, Jiamin ^a   Peng, Jiexin ^a   Kretzler, Crystal N ^a   Evdokimov, Artem ^a  

^a MONSANTO COMPANY   (United States)

^b NONE   (United States)

Author keywords

Alanine; Alanine aminotransferase; Crystal structure; Enzyme kinetics; Nitrogen metabolism; Substrate specificity

Indexed keywords

2 OXOGLUTARIC ACID; ALANINE; ALANINE AMINOTRANSFERASE; ASPARTIC ACID; BACTERIAL ENZYME; CYCLOSERINE; GLUTAMIC ACID; NITROGEN; OXALOACETIC ACID; PYRUVIC ACID;

ARTICLE; BARLEY; BI BI PING PONG REACTION; CARBON METABOLISM; CATALYSIS; CHEMICAL REACTION; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; ENZYME KINETICS; ENZYME METABOLISM; ENZYME SPECIFICITY; ENZYMOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PURIFICATION; PYROCOCCUS FURIOSUS; THERMOTOGA MARITIMA; TRANSGENIC PLANT;

HORDEUM; HORDEUM VULGARE; PYROCOCCUS FURIOSUS; THERMOTOGA MARITIMA;

EID: 84867866824     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2012.06.006     Document Type: Article

References (54)

1. D.I. Arnon Plant Physiol. 24 1949 1 15
2. C.V. Givan, Miflin, B.J. (Ed.). The Biochemistry of Plants: A Comprehensive Treatise, Vol. 5. Amino Acids and Derivatives. Xvi + 670p. Academic Press, Inc. New York, N.Y., USA, London, England. Illus (1980) pp. 329-358.
3. R.T. Furbank, Photosynthesis: A comprehensive treatise (1998) 123-135.
4. A.G. Good, and W.L. Crosby Plant Physiol. 90 1989 1305 1309
5. Y. Miyashita, R. Dolferus, K.P. Ismond, and A.G. Good Plant J. 49 2007 1108 1121
6. A.K. Shrawat, R.T. Carroll, M. Depauw, G.J. Taylor, and A.G. Good Plant Biotechnol. J. 2008 1108 1121
7. A.G. Good, Stroeher, V. L., Muench, D. G., Plants with enhanced levels of nitrogen utilization proteins in their root epidermis and uses thereof., in: U.S. Patent (Ed.), US Patent Application Publication, USA, 2005.
8. A.G. Good, S.J. Johnson, M. De Pauw, R.T. Carroll, and N. Savidov Canadian J. Botany-Revue Canadienne De Botanique 85 2007 252 262
9. D.G. Muench, M.E. Christopher, and A.G. Good Physiologia Plantarum 103 1998 503 512
10. A.G. Good, and S.T. Zaplachinski Physiologia Plantarum 90 1994 9 14
11. D.G. Muench, and A.G. Good Plant Mol. Biol. 24 1994 417 427
12. F.W. Studier Protein Expression Purif. 41 2005 207 234
13. Z.S. Derewenda, and P.G. Vekilov Acta Cryst. D62 2006 116 124
14. R.A. Copeland, R.A. Copeland, Enzymes: A Practical Introduction to Structure, Mechanism, and Data Analysis (1996) pp. xvi+306
15. D. Job, C. Cochet, A. Dhien, and E.M. Chambaz Anal. Biochem. 84 1978 68 77
16. Z. Otwinowski, and W. Minor Methods Enzymol. 276 1997 307 326
17. J.W. Pflugrath Acta Crystallogr. D55 1999 1718 1725
18. E. Potterton, P. Briggs, M. Turkenburg, and E. Dodson Acta. Cryst. D59 2003 1131 1137
19. A.J. McCoy, R.W. Grosse-Kunstleve, P.D. Adams, M.D. Winn, L.C. Storoni, and R.J. Read J. Appl. Cryst. 40 2007 658 674
20. N. Stein J. Appl. Cryst. 41 2008 641 643
21. T.C. Terwilliger Acta Cryst. D59 2000 965 972
22. G.N. Murshudov, A.A. Vagin, and E.J. Dodson Acta Cryst. D53 1997 240 255
23. P. Emsley, and K. Cowtan Acta Cryst. D60 2004 2126 2132
24. M. Vedavathi, K.S. Girish, and M.K. Kumar Biochemistry (Mosc) 71 Suppl 1 2006 S105 112
25. D.E. Ward, S.W. Kengen, J. van Der Oost, and W.M. de Vos J. Bacteriol. 182 2000 2559 2566
26. A.C. Freydank, and W. Brandt Proteins 72 2008 178 183
27. M.D. Hatch Arch Biochem. Biophys. 156 1973 207 214
28. B.-Y. Hwang, B.-K. Cho, H. Yun, K. Koteshwar, and B.G. Kim J. Mol. Catal. B: Enzymatic 37 2005 47 55
29. M. Vedavathi, K.S. Girish, and M.K. Kumar Mol. Cell Biochem. 267 2004 13 23
30. B. Lain-Guelbenzu, J. Cardenas, and J. Munoz-Blanco Eur. J. Biochem. 202 1991 881 887
31. A.G. Good, and D.G. Muench Plant Physiol. 99 1992 1520 1525
32. S. Orzechowski, J. Socha-Hanc, and A. Paszkowski Acta Physiologiae Plantarum 21 1999 323 330
33. N.W. Cornell, P.F. Zuurendonk, M.J. Kerich, and C.B. Straight Biochem. J. 220 1984 707 716
34. Z. Markovic-Housley, T. Schirmer, E. Hohenester, A.R. Khomutov, R.M. Khomutov, M.Y. Karpeisky, E. Sandmeier, P. Christen, and J.N. Jansonius Eur. J. Biochem. 236 1996 1025 1032
35. R.R. Rando Accounts Chem. Res. 8 1975 281 288
36. R.H. Abeles, and A.L. Maycock Accounts Chem. Res. 9 1976 313 319
37. G. Burnett, P. Marcotte, and C. Walsh J. Biol. Chem. 255 1980 3487 3491
38. H. Tsubota, and S. Hoshino J. Dairy Sci. 52 1969 2024 2028
39. G. Tunnicliff, and G.J. Crites IUBMB Life 46 2008 43 54
40. A.C. Eliot, and J.F. Kirsch Annu. Rev. Biochem. 73 2004 383 415
41. Z.D. Aron, P.C. Dorrestein, J.R. Blackhall, N.L. Kelleher, and C.T. Walsh J. Am. Chem. Soc. 127 2005 14986 14987
42. J.N. Jansonius Curr. Opin. Struct. Biol. 8 1998 759 769
43. B.W. Matthews J. Mol. Biol. 33 1968 491 497
44. D. Peisach, D.M. Chipman, P.W. Van Ophem, J.M. Manning, and D.J. Ringe Am. Chem. Soc. 120 1998 2268 2274
45. R. Schwarzenbacher, L. Jaroszewski, F. von Delft, P. Abdubek, E. Ambling, and T. Biorac I.A. Proteins 55 2004 759 763
46. M. Lancien, M. Martin, M.H. Hsieh, T. Leustek, H. Goodman, and G.M. Coruzzi Plant J. 29 2002 347 358
47. A.G. Good, A.K. Shrawat, and D.G. Muench Trends Plant Sci. 9 2004 597 605
48. H.M. Lam, P. Wong, H.K. Chan, K.M. Yam, L. Chen, C.M. Chow, and G.M. Coruzzi Plant Physiol. 132 2003 926 935
49. P.J. Lea, and R.A. Azevedo Annals Appl. Biol. 151 2007 269 275
50. H.K. Wong, H.K. Chan, G.M. Coruzzi, and H.M. Lam Plant Physiol. 134 2004 332 338
51. R. Ameziane, K. Bernhard, and D. Lightfoot Plant Soil 221 2000 47 57
52. F. Dubois, T. Terce-Laforgue, M.B. Gonzalez-Moro, J.M. Estavillo, R. Sangwan, A. Gallais, and B. Hirel Plant Physiol. Biochem. 41 2003 565 576
53. J.B.S. Haldane, Green and Co., 1930.
54. A.G. Evdokimov, M. Mekel, K. Hutchings, L. Narasimhan, T. Holler, and T. McGrath J. Struct. Biol. 162 2008 152 169