-
1
-
-
77957711376
-
The diversity of a distributed genome in bacterial populations
-
Baumdicker F, Hess WR, Pfaffelhuber P. 2010. The diversity of a distributed genome in bacterial populations. Ann Appl Prob. 20: 1567-1606.
-
(2010)
Ann Appl Prob
, vol.20
, pp. 1567-1606
-
-
Baumdicker, F.1
Hess, W.R.2
Pfaffelhuber, P.3
-
2
-
-
84864083035
-
The infinitely many genes model for the distributed genome of bacteria
-
Baumdicker F, Hess WR, Pfaffelhuber P. 2012. The infinitely many genes model for the distributed genome of bacteria. Genome Biol Evol. 4: 443-456.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 443-456
-
-
Baumdicker, F.1
Hess, W.R.2
Pfaffelhuber, P.3
-
3
-
-
79953902020
-
Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model
-
(16 co-authors)
-
Boissy R, Ahmed A, Janto B, et al. (16 co-authors). 2011. Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae using a modification of the finite supragenome model. BMC Genomics 12:187.
-
(2011)
BMC Genomics
, vol.12
, pp. 187
-
-
Boissy, R.1
Ahmed, A.2
Janto, B.3
-
4
-
-
0033059696
-
Conjugative mobilization of the rolling-circle plasmid pIP823 from Listeria monocytogenes BM4293 among gram-positive and gram-negative bacteria
-
Charpentier E, Gerbaud G, Courvalin P. 1999. Conjugative mobilization of the rolling-circle plasmid pIP823 from Listeria monocytogenes BM4293 among gram-positive and gram-negative bacteria. J Bacteriol. 181:3368-74.
-
(1999)
J Bacteriol
, vol.181
, pp. 3368-3374
-
-
Charpentier, E.1
Gerbaud, G.2
Courvalin, P.3
-
5
-
-
80053593423
-
Origin and evolution of gene families in Bacteria and Archaea
-
Collins RE, Merz H, Higgs PG. 2011. Origin and evolution of gene families in Bacteria and Archaea. BMC Bioinformatics 12:S14.
-
(2011)
BMC Bioinformatics
, vol.12
-
-
Collins, R.E.1
Merz, H.2
Higgs, P.G.3
-
6
-
-
78649565669
-
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
-
Den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M. 2010. Comparative genomics of the bacterial genus Listeria: genome evolution is characterized by limited gene acquisition and limited gene loss. BMC Genomics 11:688.
-
(2010)
BMC Genomics
, vol.11
, pp. 688
-
-
Den Bakker, H.C.1
Cummings, C.A.2
Ferreira, V.3
Vatta, P.4
Orsi, R.H.5
Degoricija, L.6
Barker, M.7
Petrauskene, O.8
Furtado, M.R.9
Wiedmann, M.10
-
7
-
-
77958580152
-
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
-
(18 co-authors)
-
Donati C, Hiller NL, Tettelin H, et al. (18 co-authors). 2010. Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species. Genome Biol. 11:R107.
-
(2010)
Genome Biol
, vol.11
-
-
Donati, C.1
Hiller, N.L.2
Tettelin, H.3
-
8
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res. 32:1792-1797.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
9
-
-
77950806408
-
New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximumlikelihood phylogenies: assessing the performance of PhyML 3.0. Sys Biol. 59:307-21.
-
(2010)
Sys Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
10
-
-
33745172155
-
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
-
Hao W, Golding GB. 2006. The fate of laterally transferred genes: Life in the fast lane to adaptation or death. Genome Res. 16:636-643.
-
(2006)
Genome Res
, vol.16
, pp. 636-643
-
-
Hao, W.1
Golding, G.B.2
-
12
-
-
0033977642
-
Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes
-
Hodgson DA. 2000. Generalized transduction of serotype 1/2 and serotype 4b strains of Listeria monocytogenes. MolMicrobiol. 35:312-323.
-
(2000)
Mol. Microbiol
, vol.35
, pp. 312-323
-
-
Hodgson, D.A.1
-
13
-
-
36549029848
-
Characterization of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
-
Hogg JS, Hu FZ, Janto B, Boissy R, Hayes J, Keefe R, Post JC, Ehrlich GD. 2007. Characterization of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains. Genome Biol. 8:R103.
-
(2007)
Genome Biol
, vol.8
-
-
Hogg, J.S.1
Hu, F.Z.2
Janto, B.3
Boissy, R.4
Hayes, J.5
Keefe, R.6
Post, J.C.7
Ehrlich, G.D.8
-
14
-
-
37749041470
-
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
-
(14 co-authors)
-
Kettler GC, Martiny AC, Huang K, et al. (14 co-authors). 2007. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet. 3:e231.
-
(2007)
PLoS Genet
, vol.3
-
-
Kettler, G.C.1
Martiny, A.C.2
Huang, K.3
-
15
-
-
57149085868
-
Genomics of bacteria and archaea: The emerging dynamic view of the prokaryotic world
-
Koonin EV,Wolf YI. 2008. Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res. 36: 6688-6719.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6688-6719
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
16
-
-
61349194462
-
Estimating the size of the bacterial pan-genome
-
Lapierre P, Gogarten JP. 2009. Estimating the size of the bacterial pan-genome. Trends Genet. 25:107-110.
-
(2009)
Trends Genet
, vol.25
, pp. 107-110
-
-
Lapierre, P.1
Gogarten, J.P.2
-
18
-
-
2442531727
-
Whole genome comparisons of serotype 4b and 1/2a strains of the foodborne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species
-
(30 co-authors)
-
Nelson KE, Fouts DE, Mongodin EF, et al. (30 co-authors). 2004. Whole genome comparisons of serotype 4b and 1/2a strains of the foodborne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species. Nucl Acids Res. 32: 2386-2395.
-
(2004)
Nucl Acids Res
, vol.32
, pp. 2386-2395
-
-
Nelson, K.E.1
Fouts, D.E.2
Mongodin, E.F.3
-
19
-
-
77955253105
-
Prevalence and diversity of insertion sequences in the genome of Bacillus thuringiensis YBT-1520 and comparison with other Bacillus cereus group members
-
Qiu N, He J, Wang Y, Cheng G, Li M, Sun M, Yu Z. 2010. Prevalence and diversity of insertion sequences in the genome of Bacillus thuringiensis YBT-1520 and comparison with other Bacillus cereus group members. FEMS Microbiol Lett. 310:9-16.
-
(2010)
FEMS Microbiol Lett
, vol.310
, pp. 9-16
-
-
Qiu, N.1
He, J.2
Wang, Y.3
Cheng, G.4
Li, M.5
Sun, M.6
Yu, Z.7
-
20
-
-
70149113077
-
-
R Development Core Team. Vienna, Austria: R Foundation for Statistical ComputingR version 2.10.1 (2009-12-14). ISBN 3-900051-07-0. [cited 2012 Jul 9]
-
R Development Core Team. 2009. R: A language and environment for statistical computing. [Internet]. Vienna, Austria: R Foundation for Statistical ComputingR version 2.10.1 (2009-12-14). ISBN 3-900051-07-0. [cited 2012 Jul 9]. Available at: http://www .R-project.org.
-
(2009)
R: A Language and Environment for Statistical Computing. [Internet]
-
-
-
21
-
-
53849104729
-
The pangenome structure of Escherichia coli: Comparative genomic analysis of E. coli commensal and pathogenic isolates
-
(13 co-authors)
-
Rasko DA, Rosovitz MJ, Myers GSA, et al. (13 co-authors). 2008. The pangenome structure of Escherichia coli: Comparative genomic analysis of E. coli commensal and pathogenic isolates. J Bacteriol. 190:6881-6893.
-
(2008)
J Bacteriol
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.A.3
-
22
-
-
0001354740
-
Tree-BASE: A prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
-
Sanderson MJ, Donoghue MJ, Piel W, Eriksson T. 1994. Tree-BASE: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. Am J Bot. 81:183.
-
(1994)
Am J Bot
, vol.81
, pp. 183
-
-
Sanderson, M.J.1
Donoghue, M.J.2
Piel, W.3
Eriksson, T.4
-
23
-
-
78650114015
-
Analysis of ultra-low genome conservation in Clostridium difficile
-
Scaria J, Ponnala L, Janvilisri T, Yan W, Mueller LA, Chang YF. 2010. Analysis of ultra-low genome conservation in Clostridium difficile. PLoS One 5:e15147.
-
(2010)
PLoS One
, vol.5
-
-
Scaria, J.1
Ponnala, L.2
Janvilisri, T.3
Yan, W.4
Mueller, L.A.5
Chang, Y.F.6
-
24
-
-
33644873699
-
ISfinder: The reference centre for bacterial insertion sequences
-
Siguier P, Perochon J, Lestrade L, Mahillon J, Chandler M. 2006. ISfinder: the reference centre for bacterial insertion sequences. Nucleic Acids Res. 34:D32-D36. Available at: http://www-is.biotoul.fr.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Siguier, P.1
Perochon, J.2
Lestrade, L.3
Mahillon, J.4
Chandler, M.5
-
25
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pangenome
-
(46 co-authors)
-
Tettelin H, Masignani V, Cieslewicz MJ, et al. (46 co-authors). 2005. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pangenome. Proc Nat Acad Sci USA. 102:13950-13955.
-
(2005)
Proc Nat Acad Sci USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
-
26
-
-
59249089471
-
Organized genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
(41 co-authors)
-
Touchon M, Hoede C, Tenaillon O, et al. (41 co-authors). 2009. Organized genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5:e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
-
27
-
-
79851505378
-
Horizontal transfer, not gene duplication, drives the expansion of gene families in prokaryotes
-
Treangen TJ, Rocha EP. 2011. Horizontal transfer, not gene duplication, drives the expansion of gene families in prokaryotes. PLoS Genet. 7: e1001284.
-
(2011)
PLoS Genet
, vol.7
-
-
Treangen, T.J.1
Rocha, E.P.2
-
28
-
-
0037168538
-
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic E. coli
-
(19 co-authors)
-
Welch RA, Burland V, Plunkett G, et al. (19 co-authors). 2002. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic E. coli. Proc Nat Acad Sci USA. 99: 17020-17024.
-
(2002)
Proc Nat Acad Sci USA
, vol.99
, pp. 17020-17024
-
-
Welch, R.A.1
Burland, V.2
Plunkett, G.3
-
29
-
-
0003470431
-
-
The theory of gene frequencies. Chicago: University of Chicago Press
-
Wright S. 1969. Evolution and the genetics of populations. Vol. II. The theory of gene frequencies. Chicago: University of Chicago Press.
-
(1969)
Evolution and the Genetics of Populations
, vol.2
-
-
Wright, S.1
|