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Volumn 6, Issue , 2012, Pages

Robust synchronization control scheme of a population of nonlinear stochastic synthetic genetic oscillators under intrinsic and extrinsic molecular noise via quorum sensing

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; GENE REGULATORY NETWORK; GENETIC ENGINEERING; GENETICS; KINETICS; METHODOLOGY; NONLINEAR SYSTEM; QUORUM SENSING; STATISTICS;

EID: 84867768286     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-6-136     Document Type: Article
Times cited : (23)

References (48)
  • 1
    • 3342965723 scopus 로고    scopus 로고
    • Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing
    • 10.1073/pnas.0307095101, 503725, 15256602
    • Garcia-Ojalvo J, Elowitz MB, Strogatz SH. Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing. Proc Natl Acad Sci USA 2004, 101:10955-10960. 10.1073/pnas.0307095101, 503725, 15256602.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 10955-10960
    • Garcia-Ojalvo, J.1    Elowitz, M.B.2    Strogatz, S.H.3
  • 2
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in E. coli
    • 10.1038/35002131, 10659857
    • Gardner TS, Cantor CR, Collins JJ. Construction of a genetic toggle switch in E. coli. Nature 2000, 403:339-342. 10.1038/35002131, 10659857.
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 3
    • 0035826148 scopus 로고    scopus 로고
    • Synchronization and rhythmic processes in physiology
    • 10.1038/35065745, 11258383
    • Glass L. Synchronization and rhythmic processes in physiology. Nature 2001, 410:277-284. 10.1038/35065745, 11258383.
    • (2001) Nature , vol.410 , pp. 277-284
    • Glass, L.1
  • 4
    • 23244452215 scopus 로고    scopus 로고
    • Spontaneous synchronization of coupled circadian oscillators
    • 10.1529/biophysj.104.058388, 1366510, 15849258
    • Gonze D, Bernard S, Waltermann C, Kramer A, Herzel H. Spontaneous synchronization of coupled circadian oscillators. Biophys J 2005, 89:120-129. 10.1529/biophysj.104.058388, 1366510, 15849258.
    • (2005) Biophys J , vol.89 , pp. 120-129
    • Gonze, D.1    Bernard, S.2    Waltermann, C.3    Kramer, A.4    Herzel, H.5
  • 5
    • 0030857292 scopus 로고    scopus 로고
    • Dynamics of two-component biochemical systems in interacting cells; Synchronization and desynchronization of oscillations and multiple steady states
    • 10.1016/S0303-2647(97)01688-2, 9224551
    • Wolf J, Heinrich R. Dynamics of two-component biochemical systems in interacting cells; Synchronization and desynchronization of oscillations and multiple steady states. Biosystems 1997, 43:1-24. 10.1016/S0303-2647(97)01688-2, 9224551.
    • (1997) Biosystems , vol.43 , pp. 1-24
    • Wolf, J.1    Heinrich, R.2
  • 6
    • 0034088868 scopus 로고    scopus 로고
    • Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations
    • 10.1016/S0006-3495(00)76672-0, 1300717, 10692304
    • Wolf J, Passarge J, Somsen OJG, Snoep JL, Heinrich R, Wasterhoff HV. Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations. Biophys J 2000, 78:1145-1153. 10.1016/S0006-3495(00)76672-0, 1300717, 10692304.
    • (2000) Biophys J , vol.78 , pp. 1145-1153
    • Wolf, J.1    Passarge, J.2    Somsen, O.J.G.3    Snoep, J.L.4    Heinrich, R.5    Wasterhoff, H.V.6
  • 7
    • 18444389980 scopus 로고    scopus 로고
    • Synchronizing genetic oscillators by signaling molecules
    • Wang RQ, Chen LN. Synchronizing genetic oscillators by signaling molecules. J Biol Rhythm 2005, 20:257-269.
    • (2005) J Biol Rhythm , vol.20 , pp. 257-269
    • Wang, R.Q.1    Chen, L.N.2
  • 8
    • 13744262451 scopus 로고    scopus 로고
    • Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems
    • 10.1016/j.bulm.2004.07.005, 15710184
    • Wang RQ, Jing ZJ, Chen LN. Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems. Bull Math Biol 2005, 67:339-367. 10.1016/j.bulm.2004.07.005, 15710184.
    • (2005) Bull Math Biol , vol.67 , pp. 339-367
    • Wang, R.Q.1    Jing, Z.J.2    Chen, L.N.3
  • 9
    • 33747889656 scopus 로고    scopus 로고
    • Synchronizing a multicellular system by external input: an artificial control strategy
    • 10.1093/bioinformatics/btl182, 16690633
    • Wang RQ, Chen LN, Aihara K. Synchronizing a multicellular system by external input: an artificial control strategy. Bioinformatics 2006, 22:1775-1781. 10.1093/bioinformatics/btl182, 16690633.
    • (2006) Bioinformatics , vol.22 , pp. 1775-1781
    • Wang, R.Q.1    Chen, L.N.2    Aihara, K.3
  • 12
    • 56449125182 scopus 로고    scopus 로고
    • Creative elements: network-based predictions of active centres in proteins and social networks
    • 10.1016/j.tibs.2008.09.006, 18945619
    • Csermely P. Creative elements: network-based predictions of active centres in proteins and social networks. Trends Biochem Sci 2008, 33:569-576. 10.1016/j.tibs.2008.09.006, 18945619.
    • (2008) Trends Biochem Sci , vol.33 , pp. 569-576
    • Csermely, P.1
  • 14
    • 77958564958 scopus 로고    scopus 로고
    • Community landscapes: an integrative approach to determine overlapping network module hierarchy, indentify key nodes and predict network dynamics
    • 10.1371/journal.pone.0012528, 2932713, 20824084
    • Kovacs IA, Palotai R, Szalay MS, Csermely P. Community landscapes: an integrative approach to determine overlapping network module hierarchy, indentify key nodes and predict network dynamics. PLoS One 2010, 5:e12528. 10.1371/journal.pone.0012528, 2932713, 20824084.
    • (2010) PLoS One , vol.5
    • Kovacs, I.A.1    Palotai, R.2    Szalay, M.S.3    Csermely, P.4
  • 15
    • 28844491402 scopus 로고    scopus 로고
    • Molecular communication through stochastic synchronization induced by extracellular fluctuations
    • Zhou TS, Chen LN, Aihara K. Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 2005, 95:178103.
    • (2005) Phys Rev Lett , vol.95 , pp. 178103
    • Zhou, T.S.1    Chen, L.N.2    Aihara, K.3
  • 16
    • 54749118545 scopus 로고    scopus 로고
    • Synchronization of genetic oscillators
    • 10.1063/1.2978183, 19045500
    • Zhou TS, Zhang JJ, Yuan ZJ, Chen LN. Synchronization of genetic oscillators. Chaos 2008, 18:037126. 10.1063/1.2978183, 19045500.
    • (2008) Chaos , vol.18 , pp. 037126
    • Zhou, T.S.1    Zhang, J.J.2    Yuan, Z.J.3    Chen, L.N.4
  • 17
    • 20744444887 scopus 로고    scopus 로고
    • Noise-induced cooperative behavior in a multicell system
    • 10.1093/bioinformatics/bti392, 15774552
    • Chen LN, Wang RQ, Zhou TS, Aihara K. Noise-induced cooperative behavior in a multicell system. Bioinformatics 2005, 21:2722-2729. 10.1093/bioinformatics/bti392, 15774552.
    • (2005) Bioinformatics , vol.21 , pp. 2722-2729
    • Chen, L.N.1    Wang, R.Q.2    Zhou, T.S.3    Aihara, K.4
  • 18
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • 10.1038/35002125, 10659856
    • Elowitz MB, Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403:335-338. 10.1038/35002125, 10659856.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 19
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • 10.1126/science.1070919, 12183631
    • Elowitz MB, Levine AJ, Siggia ED, Swain PS. Stochastic gene expression in a single cell. Science 2002, 297:1183-1186. 10.1126/science.1070919, 12183631.
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.B.1    Levine, A.J.2    Siggia, E.D.3    Swain, P.S.4
  • 20
    • 0037079012 scopus 로고    scopus 로고
    • Engineered gene circuits
    • 10.1038/nature01257, 12432407
    • Hasty J, McMillen D, Collins JJ. Engineered gene circuits. Nature 2002, 420:224-230. 10.1038/nature01257, 12432407.
    • (2002) Nature , vol.420 , pp. 224-230
    • Hasty, J.1    McMillen, D.2    Collins, J.J.3
  • 21
    • 0000058225 scopus 로고    scopus 로고
    • Subthreshold dynamics in periodically stimulated squid giant axons
    • 10.1103/PhysRevLett.76.4074, 10061185
    • Kaplan DT, Clay JR, Manning T, Glass L, Guevara MR, Shrier A. Subthreshold dynamics in periodically stimulated squid giant axons. Phys Rev Lett 1996, 76:4074-4077. 10.1103/PhysRevLett.76.4074, 10061185.
    • (1996) Phys Rev Lett , vol.76 , pp. 4074-4077
    • Kaplan, D.T.1    Clay, J.R.2    Manning, T.3    Glass, L.4    Guevara, M.R.5    Shrier, A.6
  • 22
    • 0038241770 scopus 로고    scopus 로고
    • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
    • 10.1016/S0092-8674(03)00346-5, 12787501
    • Atkinson MR, Savageau MA, Myers JT, Ninfa AJ. Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 2003, 113:597-607. 10.1016/S0092-8674(03)00346-5, 12787501.
    • (2003) Cell , vol.113 , pp. 597-607
    • Atkinson, M.R.1    Savageau, M.A.2    Myers, J.T.3    Ninfa, A.J.4
  • 23
    • 1942467023 scopus 로고    scopus 로고
    • Programmed population control by cell-cell communication and regulated killing
    • 10.1038/nature02491, 15064770
    • You LC, Cox RS, Weiss R, Arnold FH. Programmed population control by cell-cell communication and regulated killing. Nature 2004, 428:868-871. 10.1038/nature02491, 15064770.
    • (2004) Nature , vol.428 , pp. 868-871
    • You, L.C.1    Cox, R.S.2    Weiss, R.3    Arnold, F.H.4
  • 24
    • 70349765859 scopus 로고    scopus 로고
    • Engineering multicellular systems by cell-cell communication
    • 10.1016/j.copbio.2009.08.006, 2763981, 19733047
    • Pai A, Tanouchi Y, Collins CH, You L. Engineering multicellular systems by cell-cell communication. Curr Opin Biotech 2009, 20:461-470. 10.1016/j.copbio.2009.08.006, 2763981, 19733047.
    • (2009) Curr Opin Biotech , vol.20 , pp. 461-470
    • Pai, A.1    Tanouchi, Y.2    Collins, C.H.3    You, L.4
  • 25
    • 70649104601 scopus 로고    scopus 로고
    • Coupling oscillations and switches in genetic networks
    • 10.1016/j.biosystems.2009.08.009, 19735694
    • Gonze D. Coupling oscillations and switches in genetic networks. Biosystems 2010, 99:60-69. 10.1016/j.biosystems.2009.08.009, 19735694.
    • (2010) Biosystems , vol.99 , pp. 60-69
    • Gonze, D.1
  • 26
    • 65449118486 scopus 로고    scopus 로고
    • Synchronization and clustering of synthetic genetic networks: a role for cis-regulatory modules
    • Zhang J, Yuan Z, Zhou T. Synchronization and clustering of synthetic genetic networks: a role for cis-regulatory modules. Phys Rev E 2009, 79:041903.
    • (2009) Phys Rev E , vol.79 , pp. 041903
    • Zhang, J.1    Yuan, Z.2    Zhou, T.3
  • 27
    • 21344466279 scopus 로고    scopus 로고
    • A time-varying complex dynamical network model and its controlled synchronization criteria
    • Lu JH, Chen GR. A time-varying complex dynamical network model and its controlled synchronization criteria. IEEE Trans Auto Control 2005, 50:841-846.
    • (2005) IEEE Trans Auto Control , vol.50 , pp. 841-846
    • Lu, J.H.1    Chen, G.R.2
  • 28
    • 2542606242 scopus 로고    scopus 로고
    • Characterizing the synchronizability of small-world dynamical networks
    • Lu JH, Yu XH, Chen GR, Cheng DZ. Characterizing the synchronizability of small-world dynamical networks. IEEE Trans Circ Syst I 2004, 51:787-796.
    • (2004) IEEE Trans Circ Syst I , vol.51 , pp. 787-796
    • Lu, J.H.1    Yu, X.H.2    Chen, G.R.3    Cheng, D.Z.4
  • 29
    • 10944223518 scopus 로고    scopus 로고
    • Synchronization of coupled connected neural networks with delays
    • Lu WL, Chen TP. Synchronization of coupled connected neural networks with delays. IEEE Trans Circ Syst I 2004, 51:2491-2503.
    • (2004) IEEE Trans Circ Syst I , vol.51 , pp. 2491-2503
    • Lu, W.L.1    Chen, T.P.2
  • 30
    • 0742269301 scopus 로고    scopus 로고
    • Stochastic H-2/H∞ control with state-dependent noise
    • Chen BS, Zhang WH. Stochastic H-2/H∞ control with state-dependent noise. IEEE Trans Auto Control 2004, 49:45-57.
    • (2004) IEEE Trans Auto Control , vol.49 , pp. 45-57
    • Chen, B.S.1    Zhang, W.H.2
  • 31
    • 33645813418 scopus 로고    scopus 로고
    • On the attenuation and amplification of molecular noise in genetic regulatory networks
    • Chen BS, Wang YC. On the attenuation and amplification of molecular noise in genetic regulatory networks. BMC Bioinforma 2006, 7:52.
    • (2006) BMC Bioinforma , vol.7 , pp. 52
    • Chen, B.S.1    Wang, Y.C.2
  • 32
    • 0033205006 scopus 로고    scopus 로고
    • Robustness design of nonlinear dynamic systems via fuzzy linear control
    • Chen BS, Tseng CS, Uang HJ. Robustness design of nonlinear dynamic systems via fuzzy linear control. IEEE Trans Fuzzy Syst 1999, 7:571-585.
    • (1999) IEEE Trans Fuzzy Syst , vol.7 , pp. 571-585
    • Chen, B.S.1    Tseng, C.S.2    Uang, H.J.3
  • 33
    • 19744369589 scopus 로고    scopus 로고
    • Robustness of the noise-induced phase synchronization in a general class of limit cycle oscillators
    • Teramae J, Tanaka D. Robustness of the noise-induced phase synchronization in a general class of limit cycle oscillators. Phys Rev Lett 2004, 93:204103.
    • (2004) Phys Rev Lett , vol.93 , pp. 204103
    • Teramae, J.1    Tanaka, D.2
  • 34
    • 0035902599 scopus 로고    scopus 로고
    • Intrinsic noise in gene regulatory networks
    • 10.1073/pnas.151588598, 37484, 11438714
    • Thattai M, van Oudenaarden A. Intrinsic noise in gene regulatory networks. Proc Natl Acad Sci USA 2001, 98:8614-8619. 10.1073/pnas.151588598, 37484, 11438714.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 8614-8619
    • Thattai, M.1    van Oudenaarden, A.2
  • 35
    • 0242416539 scopus 로고    scopus 로고
    • Noise in enkaryotic gene expression
    • 10.1038/nature01546, 12687005
    • Blake WJ, Kærn M, Cantor CR, Collins JJ. Noise in enkaryotic gene expression. Nature 2003, 422:633-637. 10.1038/nature01546, 12687005.
    • (2003) Nature , vol.422 , pp. 633-637
    • Blake, W.J.1    Kærn, M.2    Cantor, C.R.3    Collins, J.J.4
  • 36
    • 0033083733 scopus 로고    scopus 로고
    • It's a noisy business! Genetic regulation at the nanomolar scale
    • 10.1016/S0168-9525(98)01659-X, 10098409
    • McAdams HH, Arkin A. It's a noisy business! Genetic regulation at the nanomolar scale. Trends Genet 1999, 15:65-69. 10.1016/S0168-9525(98)01659-X, 10098409.
    • (1999) Trends Genet , vol.15 , pp. 65-69
    • McAdams, H.H.1    Arkin, A.2
  • 37
    • 33645516353 scopus 로고    scopus 로고
    • Synchronization of coupled nonidentical genetic oscillators
    • 10.1088/1478-3975/3/1/004, 16582468
    • Li C, Chen L, Aihara K. Synchronization of coupled nonidentical genetic oscillators. Phys Biol 2006, 3:37-44. 10.1088/1478-3975/3/1/004, 16582468.
    • (2006) Phys Biol , vol.3 , pp. 37-44
    • Li, C.1    Chen, L.2    Aihara, K.3
  • 39
    • 0021892282 scopus 로고
    • Fuzzy identification of systems and its applications to modeling and control
    • Takagi T, Sugeno M. Fuzzy identification of systems and its applications to modeling and control. IEEE Trans Syst Man Cyber 1985, 15:116-132.
    • (1985) IEEE Trans Syst Man Cyber , vol.15 , pp. 116-132
    • Takagi, T.1    Sugeno, M.2
  • 40
    • 0035690920 scopus 로고    scopus 로고
    • H∞ decentralized fuzzy model reference tracking control design for nonlinear interconnected systems
    • Tseng CS, Chen BS. H∞ decentralized fuzzy model reference tracking control design for nonlinear interconnected systems. IEEE Trans Fuzzy Syst 2001, 9:795-809.
    • (2001) IEEE Trans Fuzzy Syst , vol.9 , pp. 795-809
    • Tseng, C.S.1    Chen, B.S.2
  • 42
    • 0038454434 scopus 로고    scopus 로고
    • Circadian clocks in daily and seasonal control of development
    • 10.1126/science.1085935, 12869749
    • Schultz TF, Kay SA. Circadian clocks in daily and seasonal control of development. Science 2003, 301:326-328. 10.1126/science.1085935, 12869749.
    • (2003) Science , vol.301 , pp. 326-328
    • Schultz, T.F.1    Kay, S.A.2
  • 43
    • 33745151482 scopus 로고    scopus 로고
    • Synchronization of electronic genetic networks
    • 10.1063/1.2173048, 16599758
    • Wagemakers A, Buldu JM, Garcia-Ojalvo J, Sanjuan MAF. Synchronization of electronic genetic networks. Chaos 2006, 16:013127. 10.1063/1.2173048, 16599758.
    • (2006) Chaos , vol.16 , pp. 013127
    • Wagemakers, A.1    Buldu, J.M.2    Garcia-Ojalvo, J.3    Sanjuan, M.A.F.4
  • 44
    • 38349082134 scopus 로고    scopus 로고
    • Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises
    • Chen BS, Wu WS. Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises. Math Biosciences 2008, 211:342-355.
    • (2008) Math Biosciences , vol.211 , pp. 342-355
    • Chen, B.S.1    Wu, W.S.2
  • 45
    • 13244258477 scopus 로고    scopus 로고
    • Robust H∞ filtering for nonlinear stochastic systems
    • Zhang W, Chen BS, Tseng CS. Robust H∞ filtering for nonlinear stochastic systems. IEEE Trans Signal Proc 2005, 53:589-598.
    • (2005) IEEE Trans Signal Proc , vol.53 , pp. 589-598
    • Zhang, W.1    Chen, B.S.2    Tseng, C.S.3
  • 46
    • 0035360942 scopus 로고    scopus 로고
    • Fuzzy tracking control design for nonlinear dynamic systems via T-S fuzzy model
    • Tseng CS, Chen BS, Uang HJ. Fuzzy tracking control design for nonlinear dynamic systems via T-S fuzzy model. IEEE Trans Fuzzy Syst 2001, 9:381-392.
    • (2001) IEEE Trans Fuzzy Syst , vol.9 , pp. 381-392
    • Tseng, C.S.1    Chen, B.S.2    Uang, H.J.3
  • 47
    • 28544451327 scopus 로고    scopus 로고
    • Foundations for engineering biology
    • 10.1038/nature04342, 16306983
    • Endy D. Foundations for engineering biology. Nature 2005, 438:449-453. 10.1038/nature04342, 16306983.
    • (2005) Nature , vol.438 , pp. 449-453
    • Endy, D.1
  • 48
    • 33745454125 scopus 로고    scopus 로고
    • Synthetic biological: new engineering rules for an emerging discipline
    • 1681505, 16738572
    • Andrianantoandro E, Basu S, Karig D, Weiss R. Synthetic biological: new engineering rules for an emerging discipline. Mol Syst Biol 2006, 2:2006.0028. 1681505, 16738572.
    • (2006) Mol Syst Biol , vol.2
    • Andrianantoandro, E.1    Basu, S.2    Karig, D.3    Weiss, R.4


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