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Volumn 9, Issue , 2012, Pages

Phylogenetic analysis of complete genome sequences of hepatitis B virus from an Afro-Colombian community: Presence of HBV F3/A1 recombinant strain

Author keywords

Bayesian analysis; Colombia; Genotype E; Hepatitis B virus; Recombinant subgenotype F3 A1; Subgenotype A1; Subgenotype D3

Indexed keywords

HEPATITIS B SURFACE ANTIGEN;

EID: 84867673171     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-9-244     Document Type: Article
Times cited : (13)

References (28)
  • 1
    • 0030707941 scopus 로고    scopus 로고
    • Hepatitis B virus infection
    • DOI 10.1056/NEJM199712113372406
    • Hepatitis B virus infection. Lee WM, N Engl J Med 1997 337 24 1733 1745 10.1056/NEJM199712113372406 9392700 (Pubitemid 27527771)
    • (1997) New England Journal of Medicine , vol.337 , Issue.24 , pp. 1733-1745
    • Lee, W.M.1
  • 2
    • 0033966593 scopus 로고    scopus 로고
    • Hepatitis B epidemiology in Latin America
    • 10683537
    • Hepatitis B epidemiology in Latin America. Tanaka J, Vaccine 2000 18 Suppl 1 17 S19 10683537
    • (2000) Vaccine , vol.18 , Issue.SUPPL. 1
    • Tanaka, J.1
  • 3
    • 0028862031 scopus 로고
    • Epidemiological aspects of hepatitis B and D virus infection in the northern region of Amazonas, Brazil
    • 10.1016/0035-9203(95)90074-8 8560515
    • Epidemiological aspects of hepatitis B and D virus infection in the northern region of Amazonas, Brazil. Arboleda M, Castilho MC, Fonseca JC, Albuquerque BC, Saboia RC, Yoshida CF, Trans R Soc Trop Med Hyg 1995 89 481 483 10.1016/0035-9203(95)90074-8 8560515
    • (1995) Trans R Soc Trop Med Hyg , vol.89 , pp. 481-483
    • Arboleda, M.1    Castilho, M.C.2    Fonseca, J.C.3    Albuquerque, B.C.4    Saboia, R.C.5    Yoshida, C.F.6
  • 4
    • 79955758226 scopus 로고    scopus 로고
    • Hepatitis B (HBV), hepatitis C (HCV) and hepatitis delta (HDV) viruses in the Colombian population - How is the epidemiological situation?
    • 10.1371/journal.pone.0018888 21559488
    • Hepatitis B (HBV), hepatitis C (HCV) and hepatitis delta (HDV) viruses in the Colombian population - how is the epidemiological situation? Alvarado-Mora MV, Fernandez MF, Gomes-Gouvea MS, de Azevedo Neto RS, Carrilho FJ, Pinho JR, PLoS One 2011 6 4 18888 10.1371/journal.pone.0018888 21559488
    • (2011) PLoS One , vol.6 , Issue.4 , pp. 518888
    • Alvarado-Mora, M.V.1    Fernandez, M.F.2    Gomes-Gouvea, M.S.3    De Azevedo Neto, R.S.4    Carrilho, F.J.5    Pinho, J.R.6
  • 5
    • 30744461604 scopus 로고
    • Hepatitis B in Latin America: Epidemiological patterns and eradication strategy. The Latin American Regional Study Group
    • 2139277
    • Hepatitis B in Latin America: epidemiological patterns and eradication strategy. The Latin American Regional Study Group. Fay OH, Vaccine 1990 8 100 S106 2139277
    • (1990) Vaccine , vol.8
    • Fay, O.H.1
  • 6
    • 77954711640 scopus 로고    scopus 로고
    • A comparative epidemiological study of hepatitis B and hepatitis D virus infections in Yanomami and Piaroa Amerindians of Amazonas State, Venezuela
    • 10.1111/j.1365-3156.2010.02560.x 20561309
    • A comparative epidemiological study of hepatitis B and hepatitis D virus infections in Yanomami and Piaroa Amerindians of Amazonas State, Venezuela. Duarte MC, Cardona N, Poblete F, Gonzalez K, Garcia M, Pacheco M, Botto C, Pujol FH, Williams JR, Trop Med Int Health 2010 15 8 924 933 10.1111/j.1365-3156. 2010.02560.x 20561309
    • (2010) Trop Med Int Health , vol.15 , Issue.8 , pp. 924-933
    • Duarte, M.C.1    Cardona, N.2    Poblete, F.3    Gonzalez, K.4    Garcia, M.5    Pacheco, M.6    Botto, C.7    Pujol, F.H.8    Williams, J.R.9
  • 8
    • 77949535710 scopus 로고    scopus 로고
    • Molecular and phylogenetic analyses suggest an additional hepatitis B virus genotype "i"
    • 10.1371/journal.pone.0009297 20174575
    • Molecular and phylogenetic analyses suggest an additional hepatitis B virus genotype "I". Yu H, Yuan Q, Ge SX, Wang HY, Zhang YL, Chen QR, Zhang J, Chen PJ, Xia NS, PLoS One 2010 5 2 9297 10.1371/journal.pone.0009297 20174575
    • (2010) PLoS One , vol.5 , Issue.2 , pp. 59297
    • Yu, H.1    Yuan, Q.2    Ge, S.X.3    Wang, H.Y.4    Zhang, Y.L.5    Chen, Q.R.6    Zhang, J.7    Chen, P.J.8    Xia, N.S.9
  • 9
    • 0036208430 scopus 로고    scopus 로고
    • Analysis of the complete genome of subgroup A′ hepatitis B virus isolates from South Africa
    • Analysis of the complete genome of subgroup A' hepatitis B virus isolates from South Africa. Kramvis A, Weitzmann L, Owiredu WK, Kew MC, J Gen Virol 2002 83 Pt 4 835 839 11907333 (Pubitemid 34284868)
    • (2002) Journal of General Virology , vol.83 , Issue.4 , pp. 835-839
    • Kramvis, A.1    Weitzmann, L.2    Owiredu, W.K.B.A.3    Kew, M.C.4
  • 10
    • 34447622142 scopus 로고    scopus 로고
    • Molecular characterization of subgenotype A1 (subgroup Aa) of hepatitis B virus
    • DOI 10.1111/j.1872-034X.2007.00100.x
    • Molecular characterization of subgenotype A1 (subgroup Aa) of hepatitis B virus. Kramvis A, Kew MC, Hepatol Res 2007 37 s1 27 S32 10.1111/j.1872-034X. 2007.00100.x 17627631 (Pubitemid 47086512)
    • (2007) Hepatology Research , vol.37 , Issue.SUPPL. 1
    • Kramvis, A.1    Kew, M.C.2
  • 12
    • 23044471836 scopus 로고    scopus 로고
    • Phylogeny of African complete genomes reveals a West African genotype A subtype of hepatitis B virus and relatedness between Somali and Asian A1 sequences
    • DOI 10.1099/vir.0.80972-0
    • Phylogeny of African complete genomes reveals a West African genotype A subtype of hepatitis B virus and relatedness between Somali and Asian A1 sequences. Hannoun C, Soderstrom A, Norkrans G, Lindh M, J Gen Virol 2005 86 Pt 8 2163 2167 16033963 (Pubitemid 41057520)
    • (2005) Journal of General Virology , vol.86 , Issue.8 , pp. 2163-2167
    • Hannoun, C.1    Soderstrom, A.2    Norkrans, G.3    Lindh, M.4
  • 13
    • 33646147584 scopus 로고    scopus 로고
    • Phylogenetic analysis of the precore/core gene of hepatitis B virus genotypes e and A in West Africa: New subtypes, mixed infections and recombinations
    • 16603517
    • Phylogenetic analysis of the precore/core gene of hepatitis B virus genotypes E and A in West Africa: new subtypes, mixed infections and recombinations. Olinger CM, Venard V, Njayou M, Oyefolu AO, Maiga I, Kemp AJ, Omilabu SA, le Faou A, Muller CP, J Gen Virol 2006 87 Pt 5 1163 1173 16603517
    • (2006) J Gen Virol , vol.87 , Issue.PT 5 , pp. 1163-1173
    • Olinger, C.M.1    Venard, V.2    Njayou, M.3    Oyefolu, A.O.4    Maiga, I.5    Kemp, A.J.6    Omilabu, S.A.7    Le Faou, A.8    Muller, C.P.9
  • 14
    • 72149091716 scopus 로고    scopus 로고
    • Novel hepatitis B virus subgenotype A6 in African-Belgian patients
    • 10.1016/j.jcv.2009.09.032 19857994
    • Novel hepatitis B virus subgenotype A6 in African-Belgian patients. Pourkarim MR, Lemey P, Amini-Bavil-Olyaee S, Maes P, Van Ranst M, J Clin Virol 2010 47 1 93 96 10.1016/j.jcv.2009.09.032 19857994
    • (2010) J Clin Virol , vol.47 , Issue.1 , pp. 93-96
    • Pourkarim, M.R.1    Lemey, P.2    Amini-Bavil-Olyaee, S.3    Maes, P.4    Van Ranst, M.5
  • 15
    • 78650153177 scopus 로고    scopus 로고
    • Detection of a new subgenotype of hepatitis B virus genotype A in Cameroon but not in neighbouring Nigeria
    • 10.1111/j.1469-0691.2010.03205.x 20219082
    • Detection of a new subgenotype of hepatitis B virus genotype A in Cameroon but not in neighbouring Nigeria. Hubschen JM, Mbah PO, Forbi JC, Otegbayo JA, Olinger CM, Charpentier E, Muller CP, Clin Microbiol Infect 2011 17 1 88 94 10.1111/j.1469-0691.2010.03205.x 20219082
    • (2011) Clin Microbiol Infect , vol.17 , Issue.1 , pp. 88-94
    • Hubschen, J.M.1    Mbah, P.O.2    Forbi, J.C.3    Otegbayo, J.A.4    Olinger, C.M.5    Charpentier, E.6    Muller, C.P.7
  • 16
    • 76249120532 scopus 로고    scopus 로고
    • Molecular epidemiology and genetic diversity of hepatitis B virus genotype e in an isolated Afro-Colombian community
    • 19846674
    • Molecular epidemiology and genetic diversity of hepatitis B virus genotype E in an isolated Afro-Colombian community. Alvarado Mora MV, Romano CM, Gomes-Gouvea MS, Gutierrez MF, Carrilho FJ, Pinho JR, J Gen Virol 2010 91 Pt 2 501 508 19846674
    • (2010) J Gen Virol , vol.91 , Issue.PT 2 , pp. 501-508
    • Alvarado Mora, M.V.1    Romano, C.M.2    Gomes-Gouvea, M.S.3    Gutierrez, M.F.4    Carrilho, F.J.5    Pinho, J.R.6
  • 18
    • 78650211577 scopus 로고    scopus 로고
    • Molecular characterization of the Hepatitis B virus genotypes in Colombia: A Bayesian inference on the genotype F
    • 10.1016/j.meegid.2010.10.003 20951841
    • Molecular characterization of the Hepatitis B virus genotypes in Colombia: a Bayesian inference on the genotype F. Alvarado Mora MV, Romano CM, Gomes-Gouvea MS, Gutierrez MF, Botelho L, Carrilho FJ, Pinho JR, Infect Genet Evol 2011 11 1 103 108 10.1016/j.meegid.2010.10.003 20951841
    • (2011) Infect Genet Evol , vol.11 , Issue.1 , pp. 103-108
    • Alvarado Mora, M.V.1    Romano, C.M.2    Gomes-Gouvea, M.S.3    Gutierrez, M.F.4    Botelho, L.5    Carrilho, F.J.6    Pinho, J.R.7
  • 19
    • 34248663955 scopus 로고    scopus 로고
    • The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: Twenty- something years on
    • 10.1038/nprot.2006.83 17406285
    • The single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction: twenty- something years on. Chomczynski P, Sacchi N, Nat Protoc 2006 1 2 581 585 10.1038/nprot.2006.83 17406285
    • (2006) Nat Protoc , vol.1 , Issue.2 , pp. 581-585
    • Chomczynski, P.1    Sacchi, N.2
  • 21
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • DOI 10.1186/1471-2105-5-113
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity. Edgar RC, BMC Bioinformatics 2004 5 113 10.1186/1471-2105-5-113 15318951 (Pubitemid 40195393)
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 22
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • DOI 10.1186/1471-2148-7-214
    • BEAST: Bayesian evolutionary analysis by sampling trees. Drummond AJ, Rambaut A, BMC Evol Biol 2007 7 214 10.1186/1471-2148-7-214 17996036 (Pubitemid 351253125)
    • (2007) BMC Evolutionary Biology , vol.7 , Issue.1 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 24
    • 62149145149 scopus 로고    scopus 로고
    • Molecular characterization of hepatitis B virus genotype A from Argentina and Brazil
    • 10.1007/s00705-009-0328-6 19225714
    • Molecular characterization of hepatitis B virus genotype A from Argentina and Brazil. Mbayed VA, Pineiro y Leone FG, Pezzano SC, Campos RH, Arch Virol 2009 154 3 525 529 10.1007/s00705-009-0328-6 19225714
    • (2009) Arch Virol , vol.154 , Issue.3 , pp. 525-529
    • Mbayed, V.A.1    Pineiro Leone Y, F.G.2    Pezzano, S.C.3    Campos, R.H.4
  • 25
    • 68049109465 scopus 로고    scopus 로고
    • Slave trade and hepatitis B virus genotypes and subgenotypes in Haiti and Africa
    • 10.3201/eid1508.081642 19751583
    • Slave trade and hepatitis B virus genotypes and subgenotypes in Haiti and Africa. Andernach IE, Nolte C, Pape JW, Muller CP, Emerg Infect Dis 2009 15 8 1222 1228 10.3201/eid1508.081642 19751583
    • (2009) Emerg Infect Dis , vol.15 , Issue.8 , pp. 1222-1228
    • Andernach, I.E.1    Nolte, C.2    Pape, J.W.3    Muller, C.P.4
  • 26
    • 29744442930 scopus 로고    scopus 로고
    • Recombination in the genesis and evolution of hepatitis B virus genotypes
    • DOI 10.1128/JVI.79.24.15467-15476.2005
    • Recombination in the genesis and evolution of hepatitis B virus genotypes. Simmonds P, Midgley S, J Virol 2005 79 24 15467 15476 10.1128/JVI.79.24.15467-15476.2005 16306618 (Pubitemid 43032329)
    • (2005) Journal of Virology , vol.79 , Issue.24 , pp. 15467-15476
    • Simmonds, P.1    Midgley, S.2
  • 27
    • 44649125063 scopus 로고    scopus 로고
    • Supragenotypic groups of the hepatitis B virus genome
    • 18420795
    • Supragenotypic groups of the hepatitis B virus genome. Purdy MA, Gonzales AC, Dimitrova Z, Khudyakov Y, J Gen Virol 2008 89 Pt 5 1179 1183 18420795
    • (2008) J Gen Virol , vol.89 , Issue.PT 5 , pp. 1179-1183
    • Purdy, M.A.1    Gonzales, A.C.2    Dimitrova, Z.3    Khudyakov, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.