메뉴 건너뛰기




Volumn 7, Issue 10, 2012, Pages

Analysis of Intron Sequence Features Associated with Transcriptional Regulation in Human Genes

Author keywords

[No Author keywords available]

Indexed keywords

DINUCLEOTIDE; TATA BINDING PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR CAAT; TRANSCRIPTION FACTOR GC; UNCLASSIFIED DRUG;

EID: 84867628031     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0046784     Document Type: Article
Times cited : (43)

References (34)
  • 1
    • 0033601941 scopus 로고    scopus 로고
    • RNA splicing: Running ring around RNA
    • Lamond AI, (1999) RNA splicing: Running ring around RNA. Nature 397: 655-656.
    • (1999) Nature , vol.397 , pp. 655-656
    • Lamond, A.I.1
  • 2
    • 0037406116 scopus 로고    scopus 로고
    • A quantitative analysis of intron effects on mammalian gene expression
    • Nott A, Meislin SH, Moore MJ, (2003) A quantitative analysis of intron effects on mammalian gene expression. RNA 9: 607-617.
    • (2003) RNA , vol.9 , pp. 607-617
    • Nott, A.1    Meislin, S.H.2    Moore, M.J.3
  • 3
    • 33747073534 scopus 로고    scopus 로고
    • A two-promoter system of gene expression in C. elegans
    • Choi J, Newman AP, (2006) A two-promoter system of gene expression in C. elegans. Dev Biol 296: 537-544.
    • (2006) Dev Biol , vol.296 , pp. 537-544
    • Choi, J.1    Newman, A.P.2
  • 5
    • 0141923703 scopus 로고    scopus 로고
    • NF-nB regulates BCL3 transcription in T lymphocytes through an intronic enhancer
    • Ge B, Li O, Wilder P, Rizzino A, McKeithan TW, (2003) NF-nB regulates BCL3 transcription in T lymphocytes through an intronic enhancer. J Immunol 171: 4210-4218.
    • (2003) J Immunol , vol.171 , pp. 4210-4218
    • Ge, B.1    Li, O.2    Wilder, P.3    Rizzino, A.4    McKeithan, T.W.5
  • 6
    • 22544437015 scopus 로고    scopus 로고
    • Nuclear Factor of Activated T Cells and Serum Response Factor Cooperatively Regulate the Activity of an -Actin Intronic Enhancer
    • Gonzalez Bosc LV, Layne JJ, Nelson MT, Hill-Eubanks DC, (2005) Nuclear Factor of Activated T Cells and Serum Response Factor Cooperatively Regulate the Activity of an-Actin Intronic Enhancer. J Boil Chem 280: 26113-26120.
    • (2005) J Boil Chem , vol.280 , pp. 26113-26120
    • Gonzalez Bosc, L.V.1    Layne, J.J.2    Nelson, M.T.3    Hill-Eubanks, D.C.4
  • 7
    • 34548618551 scopus 로고    scopus 로고
    • Transcriptional regulation in eukaryotic ribosomal protein genes
    • Hu H, Li X, (2007) Transcriptional regulation in eukaryotic ribosomal protein genes. Genomics 90: 421-423.
    • (2007) Genomics , vol.90 , pp. 421-423
    • Hu, H.1    Li, X.2
  • 8
    • 0036644302 scopus 로고    scopus 로고
    • Transcriptional regulation of GATA-3 by an intronic regulatory region and fetal liver zinc finger protein 1
    • Hwang ES, Choi A, Ho IC, (2002) Transcriptional regulation of GATA-3 by an intronic regulatory region and fetal liver zinc finger protein 1. J Immunol 169: 248-253.
    • (2002) J Immunol , vol.169 , pp. 248-253
    • Hwang, E.S.1    Choi, A.2    Ho, I.C.3
  • 9
    • 45749151098 scopus 로고    scopus 로고
    • Plant spliceosomal introns: not only cut and paste
    • Morello L, Breviario D, (2008) Plant spliceosomal introns: not only cut and paste. Curr Genomics 9: 227-238.
    • (2008) Curr Genomics , vol.9 , pp. 227-238
    • Morello, L.1    Breviario, D.2
  • 10
    • 20044372908 scopus 로고    scopus 로고
    • C/EBPα Regulates human Adiponectin gene transcription through an intronic enhancer
    • Qiao LP, MacLean PS, Schaack J, Orlicky DJ, Darimont C, et al. (2005) C/EBPα Regulates human Adiponectin gene transcription through an intronic enhancer. Diabetes 54: 1744-1754.
    • (2005) Diabetes , vol.54 , pp. 1744-1754
    • Qiao, L.P.1    MacLean, P.S.2    Schaack, J.3    Orlicky, D.J.4    Darimont, C.5
  • 11
    • 0036237676 scopus 로고    scopus 로고
    • Identification and characterization of a negative regulatory element within the epidermal growth factor receptor gene first intron in hormone-dependent breast cancer cells
    • Wilson MA, Chrysogelos SA, (2002) Identification and characterization of a negative regulatory element within the epidermal growth factor receptor gene first intron in hormone-dependent breast cancer cells. J Cell Biochem 85: 601-614.
    • (2002) J Cell Biochem , vol.85 , pp. 601-614
    • Wilson, M.A.1    Chrysogelos, S.A.2
  • 12
    • 77957956552 scopus 로고    scopus 로고
    • An intronic enhancer driven by NF-κB contributes to transcriptional regulation of peptidylarginine deiminase type I gene in human keratinocytes
    • Ying S, Kojima T, Kawada A, Nachat R, Serre G, et al. (2010) An intronic enhancer driven by NF-κB contributes to transcriptional regulation of peptidylarginine deiminase type I gene in human keratinocytes. J Invest Dermatol 130: 2543-2552.
    • (2010) J Invest Dermatol , vol.130 , pp. 2543-2552
    • Ying, S.1    Kojima, T.2    Kawada, A.3    Nachat, R.4    Serre, G.5
  • 13
    • 77953287837 scopus 로고    scopus 로고
    • Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast
    • Hu J, Li H, Zhang J, (2010) Analysis of transcriptional synergy between upstream regions and introns in ribosomal protein genes of yeast. Comput Biol Chem 34: 106-114.
    • (2010) Comput Biol Chem , vol.34 , pp. 106-114
    • Hu, J.1    Li, H.2    Zhang, J.3
  • 14
    • 0029824347 scopus 로고    scopus 로고
    • Identification of a transcriptional enhancer within muscle intron 1 of the human dystrophin gene
    • Klamut HJ, Bosnoyan-Collins LO, Worton RG, Ray PN, Davis HL, (1996) Identification of a transcriptional enhancer within muscle intron 1 of the human dystrophin gene. Hum Mol Genet 5: 1599-1606.
    • (1996) Hum Mol Genet , vol.5 , pp. 1599-1606
    • Klamut, H.J.1    Bosnoyan-Collins, L.O.2    Worton, R.G.3    Ray, P.N.4    Davis, H.L.5
  • 15
    • 84867635794 scopus 로고    scopus 로고
    • Statistical analysis of potential synergistic motifs of the transcriptional regulation in ribosomal protein genes of fruit fly
    • Li HM, Hu J, Zhang J, (2010) Statistical analysis of potential synergistic motifs of the transcriptional regulation in ribosomal protein genes of fruit fly. J Yunnan Univ 32: 338-345.
    • (2010) J Yunnan Univ , vol.32 , pp. 338-345
    • Li, H.M.1    Hu, J.2    Zhang, J.3
  • 16
    • 0344466589 scopus 로고    scopus 로고
    • Detection of potential positive regulatory motifs of transcription in yeast introns by comparative anylisis of ologonucleotide frequencies
    • Zhang J, Hu J, Shi XF, Cao H, Liu WB, (2003) Detection of potential positive regulatory motifs of transcription in yeast introns by comparative anylisis of ologonucleotide frequencies. Comput Boil chem 27: 497-506.
    • (2003) Comput Boil Chem , vol.27 , pp. 497-506
    • Zhang, J.1    Hu, J.2    Shi, X.F.3    Cao, H.4    Liu, W.B.5
  • 17
    • 51849126044 scopus 로고    scopus 로고
    • Longer first introns are a general property of eukaryotic gene structure
    • Bradnam KR, Korf I, (2008) Longer first introns are a general property of eukaryotic gene structure. Plos One 3: e3093.
    • (2008) Plos One , vol.3
    • Bradnam, K.R.1    Korf, I.2
  • 18
    • 0037022569 scopus 로고    scopus 로고
    • Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22
    • Chen C, Gentles AJ, Jurka J, Karlin S, (2002) Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22. Proc. Natl Acad Sci U S A 99: 2930-2935.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 2930-2935
    • Chen, C.1    Gentles, A.J.2    Jurka, J.3    Karlin, S.4
  • 19
    • 3843068862 scopus 로고    scopus 로고
    • Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence
    • Comeron JM, (2004) Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence. Genetics 167: 1293-1304.
    • (2004) Genetics , vol.167 , pp. 1293-1304
    • Comeron, J.M.1
  • 20
    • 33749434938 scopus 로고    scopus 로고
    • First exons and introns - a survey of GC content and gene structure in the human genome
    • Kalari KR, Casavant M, Bair TB, Keen HL, Comeron JM, et al. (2006) First exons and introns- a survey of GC content and gene structure in the human genome. In Silico Biol 6: 237-242.
    • (2006) In Silico Biol , vol.6 , pp. 237-242
    • Kalari, K.R.1    Casavant, M.2    Bair, T.B.3    Keen, H.L.4    Comeron, J.M.5
  • 21
    • 0036911605 scopus 로고    scopus 로고
    • Distribution and characterization of regulatory elements in the human genome
    • Majewski J, Ott J, (2002) Distribution and characterization of regulatory elements in the human genome. Genome Res 12: 1827-1836.
    • (2002) Genome Res , vol.12 , pp. 1827-1836
    • Majewski, J.1    Ott, J.2
  • 22
    • 14944374438 scopus 로고    scopus 로고
    • Distributions of exons and introns in the human genome
    • Sakharkar MK, Chow VT, Kangueane P, (2004) Distributions of exons and introns in the human genome. In Silico Biol 4: 387-393.
    • (2004) In Silico Biol , vol.4 , pp. 387-393
    • Sakharkar, M.K.1    Chow, V.T.2    Kangueane, P.3
  • 23
    • 0028104109 scopus 로고
    • Sp1 elements protect a CpG island from de novo methylation
    • Brandeis M, Frank D, Keshet I, Siegfried Z, Mendelsohn M, et al. (1994) Sp1 elements protect a CpG island from de novo methylation. Nature 371: 435-438.
    • (1994) Nature , vol.371 , pp. 435-438
    • Brandeis, M.1    Frank, D.2    Keshet, I.3    Siegfried, Z.4    Mendelsohn, M.5
  • 26
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen F, Gundersen G, Lopez R, Prydz H, (1992) CpG islands as gene markers in the human genome. Genomics 13: 1095-1107.
    • (1992) Genomics , vol.13 , pp. 1095-1107
    • Larsen, F.1    Gundersen, G.2    Lopez, R.3    Prydz, H.4
  • 27
    • 0035021811 scopus 로고    scopus 로고
    • Identification and characterization of the potential promoter regions of 1031 kinds of human genes
    • Suzuki Y, Tsunoda T, Sese J, Taira H, Mizushima-Sugano J, et al. (2001) Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res 11: 677-684.
    • (2001) Genome Res , vol.11 , pp. 677-684
    • Suzuki, Y.1    Tsunoda, T.2    Sese, J.3    Taira, H.4    Mizushima-Sugano, J.5
  • 29
    • 0036081146 scopus 로고    scopus 로고
    • DBTSS: Database of human transcriptional start sites and full-length cDNAs
    • Suzuki Y, Yamashita R, Nakai K, Sugano S, (2002) DBTSS: Database of human transcriptional start sites and full-length cDNAs. Nucleic Acids Res 30: 328-331.
    • (2002) Nucleic Acids Res , vol.30 , pp. 328-331
    • Suzuki, Y.1    Yamashita, R.2    Nakai, K.3    Sugano, S.4
  • 30
    • 0043269205 scopus 로고    scopus 로고
    • The RNA polymerase II core promoter
    • Smale ST, Kadonaga JT, (2003) The RNA polymerase II core promoter. Annu Rev Biochem 72: 449-479.
    • (2003) Annu Rev Biochem , vol.72 , pp. 449-479
    • Smale, S.T.1    Kadonaga, J.T.2
  • 31
    • 0035998744 scopus 로고    scopus 로고
    • HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues
    • Haverty PM, Weng Z, Best NL, Auerbach KR, Hsiao LL, et al. (2002) HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues. Nucleic Acids Res 30: 214-217.
    • (2002) Nucleic Acids Res , vol.30 , pp. 214-217
    • Haverty, P.M.1    Weng, Z.2    Best, N.L.3    Auerbach, K.R.4    Hsiao, L.L.5
  • 32
    • 0023216891 scopus 로고
    • CpG islands in vertebrate genomes
    • Gardiner-Garden M, Frommer M, (1987) CpG islands in vertebrate genomes. J Mol Biol 196: 261-282.
    • (1987) J Mol Biol , vol.196 , pp. 261-282
    • Gardiner-Garden, M.1    Frommer, M.2
  • 33
    • 0034707216 scopus 로고    scopus 로고
    • Genomic scrap yard: How genomes utilize all that junk
    • Makalowski W, (2000) Genomic scrap yard: How genomes utilize all that junk. Gene 259: 61-67.
    • (2000) Gene , vol.259 , pp. 61-67
    • Makalowski, W.1
  • 34
    • 0035500898 scopus 로고    scopus 로고
    • Transposable elements are found in a large number of human protein-coding genes
    • Nekrutenko A, Li WH, (2001) Transposable elements are found in a large number of human protein-coding genes. Trends Genet 17: 619-621.
    • (2001) Trends Genet , vol.17 , pp. 619-621
    • Nekrutenko, A.1    Li, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.