Two generic PCR primer sets for the detection of members of the genus Torradovirus

Journal of Virological Methods

Volumn 185, Issue 2, 2012, Pages 184-188

  Verbeek, Martin ^a   Tang, Joe ^b   Ward, Lisa I ^b  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b Ministry for Primary Industries   (New Zealand)

Author keywords

RT PCR; Torradoviruses; Universal primers

Indexed keywords

PROTEIN VP26; PROTEIN VP35; RNA DIRECTED RNA POLYMERASE; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA;

AMPLICON; ARTICLE; CONTROLLED STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT LEAF; PLANT VIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; TOMATO; TOMATO CHOCOLATE SPOT VIRUS; TOMATO CHOCOLATE VIRUS; TOMATO MARCHITEZ VIRUS; TOMATO TORRADO VIRUS; TORRADOVIRUS; VIRUS DETECTION;

BASE SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; GENETIC VECTORS; LYCOPERSICON ESCULENTUM; PICORNAVIRIDAE; PLANT DISEASES; PLANT LEAVES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; TOBACCO;

EID: 84867590333     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.06.020     Document Type: Article

References (27)

1. Alfaro-Fernández A., Bese G., Córdoba-Sellés C., Cebrián M.C., Herrera-Vásquez J.A., Forray A., Jordá C. First report of tomato torrado virus infecting tomato in Hungary. Plant Disease 2009, 93:554.
2. Alfaro-Fernández A., Córdoba-Sellés C., Cebrián M.C., Herrera-Vásquez J.A., Sánchez-Navarro J.A., Juárez M., Espino A., Martín R., Jordá C. First report of tomato torrado virus on weed hosts in Spain. Plant Disease 2008, 92:831.
3. Alfaro-Fernández A., Córdoba-Sellés C., Cebrián M.C., Sánchez-Navarro J.A., Espino A., Martín R., Jordá C. First report of tomato torrado virus in tomato in the Canary Islands, Spain. Plant Disease 2007, 91:1060.
4. Alfaro-Fernández A., Córdoba-Sellés M.D.C., Juárez M., Herrera-Vásquez J.A., Sánchez-Navarro J.A., Cebrián M.D.C., Font M.I., Jordá C. Occurrence and geographical distribution of the 'torrado' disease in Spain. Journal of Phytopathology 2010, 158:457-469.
5. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 1997, 25:3389-3402.
6. Amari K., Gonzalez-Ibeas D., Gómez P., Sempere R.N., Sanchez-Pina M.A., Aranda M.A., Diaz-Pendon J.A., Navas-Castillo J., Moriones E., Blanca J., Hernandez-Gallardo M.D., Anastasio G. Tomato torrado virus is transmitted by Bemisia tabaci and infects pepper and eggplant in addition to tomato. Plant Disease 2008, 92:1139.
7. Batuman O., Kuo Y.W., Palmieri M., Rojas M.R., Gilbertson R.L. Tomato chocolate spot virus, a member of a new torradovirus species that causes a necrosis-associated disease of tomato in Guatemala. Archives of Virology 2010, 155:857-869.
8. Chen J., Chen J., Adams M.J. A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Archives of Virology 2001, 146:757-766.
9. Chomič A., Pearson M.N., Clover G.R.G., Farreyrol K., Saul D., Hampton J.G., Armstrong K.F. A generic RT-PCR assay for the detection of Luteoviridae. Plant Pathology 2010, 59:429-442.
10. Davino S., Bivona L., Iacono G., Davino M. First report of tomato torrado virus infecting tomato in Italy. Plant Disease 2010, 94:1172.
11. Gambley C.F., Thomas J.E., Persley D.M., Hall B.H. First report of tomato torrado virus on tomato from Australia. Plant Disease 2010, 94:486.
12. Herrera-Vásquez J.A., Alfaro-Fernández A., Córdoba-Sellés M.C., Cebrián M.C., Font M.I., Jordá C. First report of tomato torrado virus infecting tomato in single and mixed infections with Cucumber mosaic virus in Panama. Plant Disease 2009, 93:198.
13. Jones D., Farreyrol K., Clover G.R.G., Pearson M.N. Development of a generic PCR detection method for tobraviruses. Australasian Plant Pathology 2008, 37:132-136.
14. Menzel W., Jelkmann W., Maiss E. Detection of four apple viruses by multiplex RT-PCR assays with coamplification of plant mRNA as internal control. Journal of Virological Methods 2002, 99:81-92.
15. Pospieszny H., Borodynko N., Obrepalska-Steplowska A., Hasiów B. The first report of tomato torrado virus in Poland. Plant Disease 2007, 91:1364.
16. Pospieszny H., Budziszewska M., Hasiów-Jaroszewska B., Obrepalska-Steplowska A., Borodynko N. Biological and molecular characterization of polish isolates of tomato torrado virus. Journal of Phytopathology 2010, 158:56-62.
17. Sanfaçon H., Iwanami T., Karasev A.V., Van der Vlugt R.A.A., Wellink J., Wetzel T., Yoshikawa N. Secoviridae. Ninth Report of the International Committee on Taxonomy of Viruses 2011, 881-899. Elsevier Academic Press, San Diego. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.).
18. Sanfaçon H., Wellink J., Le Gall O., Karasev A., Van der Vlugt R.A.A., Wetzel T. Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus. Archives of Virology 2009, 154:899-907.
19. Turina M., Ricker M.D., Lenzi R., Masenga V., Ciuffo M. A severe disease of tomato in the Culiacan area (Sinaloa, Mexico) is caused by a new picorna-like viral species. Plant Disease 2007, 91:932-941.
20. Untiveros M., Perez-Egusquiza Z., Clover G. PCR assays for the detection of members of the genus Ilarvirus and family Bromoviridae. Journal of Virological Methods 2010, 165:97-104.
21. Van der Vlugt R.A.A., Steffens P., Cuperus C., Barg E., Lesemann D.E., Bos L., Vetten H.J. Further evidence that Shallot yellow stripe virus (SYSV) is a distinct potyvirus and reidentification of Welsh onion yellow stripe virus as a SYSV strain. Phytopathology 1999, 89:148-155.
22. Verbeek M., Dullemans A.M. First report of tomato torrado virus infecting tomato in Colombia. Plant Disease 2012, 96:592.
23. Verbeek M., Dullemans A.M., Van den Heuvel J.F.J.M., Maris P.C., Van der Vlugt R.A.A. Identification and characterisation of tomato torrado virus, a new plant picorna-like virus from tomato. Archives of Virology 2007, 152:881-890.
24. Verbeek M., Dullemans A.M., Van den Heuvel J.F.J.M., Maris P.C., Van der Vlugt R.A.A. Tomato marchitez virus, a new plant picorna-like virus from tomato related to tomato torrado virus. Archives of Virology 2008, 153:127-134.
25. Verbeek M., Dullemans A.M., Van den Heuvel J.F.J.M., Maris P.C., Van der Vlugt R.A.A. Tomato chocolàte virus: a new plant virus infecting tomato and a proposed member of the genus Torradovirus. Archives of Virology 2010, 155:751-755.
26. Verdin E., Gognalons P., Wipf-Scheibel C., Bornard I., Ridray G., Schoen L., Lecoq H. First report of tomato torrado virus in tomato crops in France. Plant Disease 2009, 93:1352.
27. Wei T., Clover G. Use of primers with 5' non-complementary sequences in RT-PCR for the detection of nepovirus subgroups A and B. Journal of Virological Methods 2008, 153:16-21.