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Volumn 12, Issue 6, 2012, Pages 1124-1132

Developing genomic resources for the common bottlenose dolphin (Tursiops truncatus): Isolation and characterization of 153 single nucleotide polymorphisms and 53 genotyping assays

Author keywords

CATS loci; Cetacean; Conservation genetics; SNP discovery; TaqMan Assays; Targeted gene approach

Indexed keywords

ALLELE; ANIMAL; ARTICLE; BOTTLENOSE DOLPHIN; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOTYPE; METHODOLOGY; MOLECULAR BIOLOGY; MOLECULAR GENETICS; MOLECULAR TYPING; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES;

EID: 84867560785     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12008     Document Type: Article
Times cited : (7)

References (38)
  • 1
    • 2542449370 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in mammals: a targeted-gene approach
    • Aitken N, Smith S, Schwartz C, Morin PA (2004) Single nucleotide polymorphism (SNP) discovery in mammals: a targeted-gene approach. Molecular Ecology, 13, 1423-1431.
    • (2004) Molecular Ecology , vol.13 , pp. 1423-1431
    • Aitken, N.1    Smith, S.2    Schwartz, C.3    Morin, P.A.4
  • 4
    • 0001947514 scopus 로고
    • Evolution of animal mitochondrial DNA
    • (eds Nei M, Koehn RK). Sinauer Associates, Sunderland, MA.
    • Brown WM (1983) Evolution of animal mitochondrial DNA. In: Evolution of Genes and Proteins (eds Nei M, Koehn RK), pp. 62-88. Sinauer Associates, Sunderland, MA.
    • (1983) Evolution of Genes and Proteins , pp. 62-88
    • Brown, W.M.1
  • 6
    • 84867532338 scopus 로고    scopus 로고
    • A review of current knowledge of techniques to extract and amplify DNA from 'difficult' whale samples. Report to the Scientific Committee of the International Whaling Commission (SC/61/SD2).
    • Cipriano F, Pastene L (2009) A review of current knowledge of techniques to extract and amplify DNA from 'difficult' whale samples. Report to the Scientific Committee of the International Whaling Commission (SC/61/SD2).
    • (2009)
    • Cipriano, F.1    Pastene, L.2
  • 7
    • 79952337051 scopus 로고    scopus 로고
    • A robust statistical method to detect null alleles in microsatellite and SNP datasets in both panmictic and inbred populations
    • Article 9.
    • Girard P (2011) A robust statistical method to detect null alleles in microsatellite and SNP datasets in both panmictic and inbred populations. Statistical Applications in Genetics and Molecular Biology, 10, Article 9.
    • (2011) Statistical Applications in Genetics and Molecular Biology , vol.10
    • Girard, P.1
  • 8
    • 33750917591 scopus 로고    scopus 로고
    • Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution
    • Harlin-Cognato AD, Honeycutt RL (2006) Multi-locus phylogeny of dolphins in the subfamily Lissodelphininae: character synergy improves phylogenetic resolution. BMC Evolutionary Biology, 6, 87.
    • (2006) BMC Evolutionary Biology , vol.6 , pp. 87
    • Harlin-Cognato, A.D.1    Honeycutt, R.L.2
  • 9
    • 79951759855 scopus 로고    scopus 로고
    • Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges
    • Helyar SJ, Hemmer-Hansen J, Bekkevold D, et al. (2011) Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources, 11, 123-136.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 123-136
    • Helyar, S.J.1    Hemmer-Hansen, J.2    Bekkevold, D.3
  • 10
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader CA (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Applied and Environmental Microbiology, 62, 1102-1106.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 11
    • 71349083154 scopus 로고    scopus 로고
    • SNP discovery based on CATS and genotyping in the finless porpoise (Neophocaena phocaenoides)
    • Li S, Wan H, Ji H, Zhou K, Yang G (2009) SNP discovery based on CATS and genotyping in the finless porpoise (Neophocaena phocaenoides). Conservation Genetics, 10, 2013-2019.
    • (2009) Conservation Genetics , vol.10 , pp. 2013-2019
    • Li, S.1    Wan, H.2    Ji, H.3    Zhou, K.4    Yang, G.5
  • 12
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, MA.
    • Li WH (1997) Molecular Evolution. Sinauer Associates, Sunderland, MA.
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 13
    • 0842345931 scopus 로고    scopus 로고
    • SNP genotyping by the 5′-nuclease reaction
    • Livak KJ (2003) SNP genotyping by the 5′-nuclease reaction. Methods in Molecular Biology, 212, 129-147.
    • (2003) Methods in Molecular Biology , vol.212 , pp. 129-147
    • Livak, K.J.1
  • 16
    • 0002492276 scopus 로고
    • Recognizing two populations of the bottlenose dolphin (Tursiops truncatus) off the Atlantic coast of North America: morphologic and ecologic considerations
    • Mead JG, Potter CW (1995) Recognizing two populations of the bottlenose dolphin (Tursiops truncatus) off the Atlantic coast of North America: morphologic and ecologic considerations. IBI Reports, 5, 31-44.
    • (1995) IBI Reports , vol.5 , pp. 31-44
    • Mead, J.G.1    Potter, C.W.2
  • 17
    • 9644266571 scopus 로고    scopus 로고
    • GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms
    • Meirmans PG, Van Tienderen PH (2004) GENOTYPE and GENODIVE: two programs for the analysis of genetic diversity of asexual organisms. Molecular Ecology Notes, 4, 792-794.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 792-794
    • Meirmans, P.G.1    Van Tienderen, P.H.2
  • 18
    • 1642271573 scopus 로고    scopus 로고
    • SNPs in ecology, evolution and conservation
    • the SNP workshop group
    • Morin PA, Luikart G, Wayne RK, the SNP workshop group (2004) SNPs in ecology, evolution and conservation. Trends in Ecology & Evolution, 9, 208-216.
    • (2004) Trends in Ecology & Evolution , vol.9 , pp. 208-216
    • Morin, P.A.1    Luikart, G.2    Wayne, R.K.3
  • 20
    • 35848929259 scopus 로고    scopus 로고
    • Highly accurate SNP genotyping from historical and low-quality samples
    • Morin PA, McCarthy M (2007) Highly accurate SNP genotyping from historical and low-quality samples. Molecular Ecology Notes, 7, 937-946.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 937-946
    • Morin, P.A.1    McCarthy, M.2
  • 21
    • 77954523644 scopus 로고    scopus 로고
    • Characterization of 42 single nucleotide polymorphism (SNP) markers for the bowhead whale (Balaena mysticetus) for use in discriminating populations
    • Morin PA, Pease VL, Hancock BL, Robertson KM, Antolik CW, Huebinger RM (2010) Characterization of 42 single nucleotide polymorphism (SNP) markers for the bowhead whale (Balaena mysticetus) for use in discriminating populations. Marine Mammal Science, 26, 716-732.
    • (2010) Marine Mammal Science , vol.26 , pp. 716-732
    • Morin, P.A.1    Pease, V.L.2    Hancock, B.L.3    Robertson, K.M.4    Antolik, C.W.5    Huebinger, R.M.6
  • 22
    • 0023480940 scopus 로고
    • Evolution of animal mitochondrial DNA: relevance for population biology and systematics
    • Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annual Review of Ecology and Systematics, 18, 269-292.
    • (1987) Annual Review of Ecology and Systematics , vol.18 , pp. 269-292
    • Moritz, C.1    Dowling, T.E.2    Brown, W.M.3
  • 25
    • 79751495509 scopus 로고    scopus 로고
    • A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida)
    • Olsen MT, Volny VH, Bérubé M, Dietz R, Lydersen C, Kovacs KM, Dodd RS, Palsbøll PJ (2011) A simple route to single-nucleotide polymorphisms in a nonmodel species: identification and characterization of SNPs in the Artic ringed seal (Pusa hispida hispida). Molecular Ecology Resources, 11, 9-19.
    • (2011) Molecular Ecology Resources , vol.11 , pp. 9-19
    • Olsen, M.T.1    Volny, V.H.2    Bérubé, M.3    Dietz, R.4    Lydersen, C.5    Kovacs, K.M.6    Dodd, R.S.7    Palsbøll, P.J.8
  • 26
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research
    • Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288-295.
    • (2006) Molecular Ecology Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 28
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism
    • Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
    • (1995) Journal of Heredity , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 29
    • 0141727253 scopus 로고    scopus 로고
    • PCR-based sex determination in Odontocete cetaceans
    • Rosel PE (2003) PCR-based sex determination in Odontocete cetaceans. Conservation Genetics, 4, 647-649.
    • (2003) Conservation Genetics , vol.4 , pp. 647-649
    • Rosel, P.E.1
  • 30
    • 70350745759 scopus 로고    scopus 로고
    • Restricted dispersal in a continuously distributed marine species: common bottlenose dolphins Tursiops truncatus in coastal waters of the western North Atlantic
    • Rosel PE, Hansen L, Hohn AA (2009) Restricted dispersal in a continuously distributed marine species: common bottlenose dolphins Tursiops truncatus in coastal waters of the western North Atlantic. Molecular Ecology, 18, 5030-5045.
    • (2009) Molecular Ecology , vol.18 , pp. 5030-5045
    • Rosel, P.E.1    Hansen, L.2    Hohn, A.A.3
  • 31
    • 34548263230 scopus 로고    scopus 로고
    • Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard
    • Rosenblum EB, Novembre J (2007) Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. Journal of Heredity, 98, 331-336.
    • (2007) Journal of Heredity , vol.98 , pp. 331-336
    • Rosenblum, E.B.1    Novembre, J.2
  • 32
    • 36849080837 scopus 로고    scopus 로고
    • GENEPOP'007: a complete reimplementation of the Genepop software for Windows and Linux
    • Rousset F (2008) GENEPOP'007: a complete reimplementation of the Genepop software for Windows and Linux. Molecular Ecology Resources, 8, 103-106.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 103-106
    • Rousset, F.1
  • 33
    • 30144441004 scopus 로고    scopus 로고
    • Mitochondrial and nuclear DNA analyses reveal fine scale geographic structure in bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico
    • Sellas AB, Wells RS, Rosel PE (2005) Mitochondrial and nuclear DNA analyses reveal fine scale geographic structure in bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico. Conservation Genetics, 6, 715-728.
    • (2005) Conservation Genetics , vol.6 , pp. 715-728
    • Sellas, A.B.1    Wells, R.S.2    Rosel, P.E.3
  • 34
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal A, Milan D, SanCristobal M, Eggen A (2002) A review on SNP and other types of molecular markers and their use in animal genetics. Genetics Selection Evolution, 34, 275-305.
    • (2002) Genetics Selection Evolution , vol.34 , pp. 275-305
    • Vignal, A.1    Milan, D.2    SanCristobal, M.3    Eggen, A.4
  • 35
    • 84867528318 scopus 로고    scopus 로고
    • Data from: developing genomic resources for the common bottlenose dolphin (Tursiops truncatus): isolation and characterization of 153 single nucleotide polymorphisms and 53 genotyping assays
    • doi:10.5061/dryad.29ds0.
    • Vollmer NL, Rosel PE (2012) Data from: developing genomic resources for the common bottlenose dolphin (Tursiops truncatus): isolation and characterization of 153 single nucleotide polymorphisms and 53 genotyping assays. Dryad Digital Repository. doi:10.5061/dryad.29ds0.
    • (2012) Dryad Digital Repository
    • Vollmer, N.L.1    Rosel, P.E.2


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