Anonymous nuclear markers for cetacean species

Conservation Genetics

Volumn 11, Issue 3, 2010, Pages 1143-1146

  Amaral, A R ^a,b   Silva, M C ^a   Moller L M ^b,c   Beheregaray, L B ^b,c   Coelho, M M ^a  

^a UNIVERSITY OF LISBON   (Portugal)

^b MACQUARIE UNIVERSITY   (Australia)

^c FLINDERS UNIVERSITY   (Australia)

Author keywords

Anonymous loci; Common dolphins; Delphinids; SNPs

Indexed keywords

CETACEAN; CONSERVATION GENETICS; CONSERVATION PLANNING; GENETIC MARKER; POLYMORPHISM; SPECIES CONSERVATION;

CETACEA; DELPHINIDAE; DELPHINUS; DELPHINUS DELPHIS;

EID: 77952878113     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-9903-3     Document Type: Article

References (17)

1. Ballard JWO, Whitlock MC (2004) The incomplete natural history of mitochondria. Mol Ecol 13: 729-744. doi: 10. 1046/j. 1365-294X. 2003. 02063. x.
2. Beheregaray LB (2008) Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere. Mol Ecol 17: 3754-3774.
3. Brumfield RT, Beerli P, Nickerson DA, Edwards SV (2003) The utility of single nucleotide polymorphisms in inferences of population history. Trends Ecol Evol 18: 249-256. doi: 10. 1016/S0169-5347(03)00018-1.
4. Caballero S, Jackson J, Mignucci-Giannoni AA, Barrios-Garrido H, Beltran-Pedreros S, Montiel-Villalobos MG, Robertson KM, Baker CS (2008) Molecular systematics of South American dolphins Sotalia: sister taxa determination and phylogenetic relationships, with insights into a multi-locus phylogeny of the Delphinidae. Mol Phylogenet Evol 46: 252-268. doi: 10. 1016/j. ympev. 2007. 10. 015.
5. Han L, Su B, Li WH, Zhao ZM (2008) CpG island density and its correlations with genomic features in mammalian genomes. Genome Biol 9: R79. doi: 10. 1186/gb-2008-9-5-r79.
6. Hudson RR, Kaplan NL (1985) Statistical properties of the number of recombination events in the history of a sample of DNA-sequences. Genetics 111: 147-164.
7. Lyons LA, Kehler JS, O'Brien SJ (1999) Development of comparative anchor tagged sequences (CATS) for canine genome mapping. J Hered 90: 15-26. doi: 10. 1093/jhered/90. 1. 15.
8. Morin PA, Luikart G, Wayne RK (2004) SNPs in ecology, evolution and conservation. Trends Ecol Evol 19: 208-216. doi: 10. 1016/j. tree. 2004. 01. 009.
9. Morin PA, Aitken NC, Rubio-Cisneros N, Dizon AE, Mesnick S (2007) Characterization of 18 SNP markers for sperm whale (Physeter macrocephalus). Mol Ecol Notes 7: 626-630. doi: 10. 1111/j. 1471-8286. 2006. 01654. x.
10. Primmer CR, Borge T, Lindell J, Saetre GP (2002) Single-nucleotide polymorphism characterization in species with limited available sequence information: high nucleotide diversity revealed in the avian genome. Mol Ecol 11: 603-612. doi: 10. 1046/j. 0962-1083. 2001. 01452. x.
11. Ray DA (2007) SINEs of progress: mobile element applications to molecular ecology. Mol Ecol 16: 19-33. doi: 10. 1111/j. 1365-294X. 2006. 03104. x.
12. Rosenblum EB, Belfiore NM, Moritz C (2007) Anonymous nuclear markers for the eastern fence lizard, Sceloporus undulatus. Mol Ecol Notes 7: 113-116. doi: 10. 1111/j. 1471-8286. 2006. 01547. x.
13. Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497. doi: 10. 1093/bioinformatics/btg359.
14. Rozen S, Skaletsky HJ (2000) Primer3 on WWW for general users and for biologist programmars. In: Misener S, Krawetz S (eds) Bioinformatics methods protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp 365-386.
15. Stephens M, Donnelly P (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73: 1162-1169. doi: 10. 1086/379378.
16. Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144: 389-399.
17. Zink RM, Barrowclough GF (2008) Mitochondrial DNA under siege in avian phylogeography. Mol Ecol 17: 2107-2121. doi: 10. 1111/j. 1365-294X. 2008. 03737. x.