DNA barcoding Neotropical fishes: Recent advances from the Pampa Plain, Argentina

Molecular Ecology Resources

Volumn 12, Issue 6, 2012, Pages 999-1011

  Rosso, J J ^a   Mabragana E ^a   Gonzalez Castro M ^a   Diaz de Astarloa J M ^a  

^a Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

Author keywords

Argentina; Biodiversity assessment; DNA barcoding; Fish species; Salminus brasiliensis

Indexed keywords

CYTOCHROME C OXIDASE;

ANIMAL; ARGENTINA; ARTICLE; BIODIVERSITY; CLASSIFICATION; CLUSTER ANALYSIS; DNA BARCODING; DNA SEQUENCE; EVALUATION; FISH; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ANIMALS; ARGENTINA; BIODIVERSITY; CLUSTER ANALYSIS; DNA BARCODING, TAXONOMIC; ELECTRON TRANSPORT COMPLEX IV; FISHES; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

CNESTERODON DECEMMACULATUS; CORYDORAS PALEATUS; HOPLIAS MALABARICUS; OLIGOSARCUS JENYNSII; PISCES; RHAMDIA QUELEN; RINELORICARIA; SALMINUS; SYNBRANCHUS MARMORATUS;

EID: 84867541637     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/1755-0998.12010     Document Type: Article

References (66)

1. Alexandrou MA, Oliveira C, Maillard M et al. (2011) Competition and phylogeny determine community structure in Müllerian co-mimics. Nature, 469, 84-88.
2. Almirón AE, Azpelicueta M, Casciotta JR, López Cazorla A (1997) Ichthyogeographic boundaries between the Brazilian and Austral subregions in South America, Argentina. Biogeographica, 73, 23-30.
3. April J, Mayden RL, Hanner RH, Bernatchez L (2011) Genetic calibration of species diversity among North America's freshwater fishes. Proceedings of the National Academy of Sciences of the USA, 108, 10602-10607.
4. Aquilino SVL, Tango JM, Fontanilla IKC et al. (2011) DNA barcoding of the ichthyofauna of Taal Lake, Philippines. Molecular Ecology Resources, 11, 612-619.
5. Baldi G, Guerschman JP, Paruelo JM (2006) Characterizing fragmentation in temperate South America grasslands. Agriculture, Ecosystems and Environment, 116, 197-208.
6. Becker S, Hanner R, Steinke D (2011) Five years of FISH-BOL: brief status report. Mitochondrial DNA, 22, 3-9.
7. Broughton RE, Milam JE, Roe BA (2001) The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA. Genome Research, 11, 1958-1967.
8. de Carvalho DC, Oliveira DAA, Pompeu PS, Gontijo-Leal C, Oliveira C, Hanner R (2011) Deep barcode divergence in Brazilian freshwater fishes: the case of the São Francisco River basin. Mitochondrial DNA, 22, 80-86.
9. Casciotta JR, Almirón AE, Azpelicueta M (2005) Astyanax pampa (Characiformes, Characidae), a new species from the southernmost boundary of the Brazilian subregion, Argentina. Revue Suisse de Zoologie, 112, 401-408.
10. Chivian E, Bernstein A (2008) Sustaining Life: How Human Health Depends on Biodiversity. Oxford University Press, New York.
11. Collins RA, Boykin LM, Cruickshank RH, Armstrong KF (2012) Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification. Methods in Ecology and Evolution, 3, 457-465.
12. DeSalle R (2006) Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff. Conservation Biology, 20, 1545-1547.
13. DeSalle R, Amato G (2004) The expansion of conservation genetics. Nature Reviews Genetics, 5, 702-712.
14. Díaz de Astarloa JM, Mabragaña E, Hanner R, Figueroa DE (2008) Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding. Zootaxa, 1921, 35-46.
15. Eschmeyer WN (ed.) (2012) Catalog of Fishes. California Academy of Sciences. Electronic version accessed 13/02/2012. http://research.calacademy.org/research/ichthyology/catalog/fishcatmain.asp.
16. Frenguelli J (1956) Rasgos generales de la hidrografía de la Provincia de Buenos Aires. LEMIT Serie II: 1-19.
17. Frézal L, Leblois R (2008) 4 years of DNA barcoding: current advances and prospects. Infection Genetics and Evolution, 8, 727-736.
18. Géry J, Lauzanne L (1990) Les types des espèces du genre Salminus Agassiz, 1829 (Ostariophysi, Characidae) du Muséum National d'Histoire Naturelle de Paris. Cybium, 14, 113-124.
19. Goldstein PZ, DeSalle R (2011) Integrating DNA barcode data and taxonomic practice: determination, discovery, and description. BioEssays, 33, 135-147.
20. González-Castro M, Heras S, Cousseau MB, Roldán MI (2008) Assessing species of Mugil platanus Günther, 1880 in relation to Mugil cephalus Linnaeus, 1758 (Actinopterygii). Italian Journal of Zoology, 75, 319-325.
21. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, Series B: Biological Sciences, 270, 313-322.
22. Helfman GS, Collette BB, Facey DE, Bowen BW (2009) The Diversity of Fishes: Biology, Evolution and Ecology. Wiley-Blackwell, Chichester.
23. Heras S, González-Castro M, Roldán MI (2006) "Mugil curema in Argentinean waters: combined morphological and molecular approach". Aquaculture, 261, 473-478.
24. Heras S, Roldán MI, González-Castro M (2009) Molecular phylogeny of Mugilidae fishes revised. Reviews in Fish Biology and Fisheries, 19, 217-231.
25. Hubert N, Hanner R, Holm E et al. (2008) Identifying Canadian freshwater fishes through DNA barcodes. PLoS ONE, 3, 1-8.
26. Ivanova NV, deWaard JR, Hebert PDN (2006) An inexpensive, automation friendly protocol for recovering high-quality DNA. Molecular Ecology Notes, 6, 998-1002.
27. Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7, 544-548.
28. Kimura M (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal Molecular Evolution, 16, 111-120.
29. Lara A, Ponce de León JL, Rodríguez R et al. (2010) DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts. Molecular Ecology Resources, 10, 421-430.
30. Lim GM, Balke M, Meier R (2012) Determining species boundaries in a world full of rarity: singletons, species delimitation methods. Systematic Biology, 61, 165-169.
31. Lima FCT, Britski HA (2007) Salminus franciscanus, a new species from the rio São Francisco basin, Brazil (Ostariophysi: Characiformes: Characidae). Neotropical Ichthyology, 5, 237-244.
32. López HL, Miquelarena AM (2005) Biogeografía de los peces continentales de la Argentina. In: Regionalización biogeográfica en Iberoamérica y tópicos afines (eds Llorente Bousquets J & Morrone JJ), pp. 509-550. UNAM, México.
33. López HL, Morgan CC, Montenegro MJ (2002) Ichthyological ecoregions of Argentina. Probiota, FCNyM, UNLP, Serie Documentos, 1, 1-68.
34. Mabragaña E, Díaz de Astarloa JM, Hanner R, Zhang J, González Castro M (2011) DNA Barcoding identifies Argentine fishes from marine and brackish waters. PLoS ONE, 6, e28655.
35. McKinney ML, Lockwood JL (1999) Biotic homogenization: a few winners replacing many losers in the next mass extinction. Trends in Ecology and Evolution, 14, 450-453.
36. Meier R, Zhang G, Ali F (2008) The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification. Systematic Biology, 57, 809-813.
37. Meyer CP, Paulay G (2005) DNA barcoding: error rates based on comprehensive sampling. PLOS Biology, 3, 2229-2238.
38. Monk RR, Baker RJ (2001) e-Vouchers and the use of digital imagery in natural history collections. Museology, Museum of Texas Tech University, 10, 1-8.
39. Mora C, Tittensor DP, Adl S, Simpson AGB, Worm B (2011) How many species are there on earth and in the ocean? PLoS Biology, 9, e1001127.
40. Nelson JS (1976) Fishes of the World. Wiley-Interscience, New York, 416 pp.
41. Nelson JS (2006) Fishes of the World, 4th edn. Wiley and Sons, Hoboken, NJ.
42. Nwani CD, Becker S, Braid HE, Ude EF, Okogwu OI, Hanner R (2011) DNA barcoding discriminates freshwater fishes from southeastern Nigeria and provides river system-level phylogeographic resolution within some species. Mitochondrial DNA, 22, 43-51.
43. Packer L, Gibbs J, Sheffield C, Hanner R (2009) DNA barcoding and the mediocrity of morphology. Molecular Ecology Resources, 9, 42-50.
44. Padial JM, Miralles A, De la Riva I, Vences M (2010) The integrative future of taxonomy. Frontiers in Zoology, 7, 16.
45. Pereira LHG, Maia GMG, Hanner R, Foresti F, Oliveira C (2011) DNA barcodes discriminate freshwater fishes from the Paraíba do Sul River Basin, São Paulo, Brazil. Mitochondrial DNA, 2, 71-79.
46. Pringle CM, Scatena FN, Paaby-Hansen P, Nuñez-Ferrera M (2000) River conservation in Latin America and the Caribbean. In: Global Perspectives on River Conservation: Science, Policy and Practice (eds Boon PJ, Davies BR & Petts GE), pp. 41-78. John Wiley & Sons, Chichester.
47. Quirós R, Boveri MB, Petracchi CA et al. (2006) Los Efectos de la Agriculturización del Humedal Pampeano Sobre la Eutrofización de sus Lagunas. In: Eutrofização na América do Sul: Causas, conseqüências e tecnologias de gerenciamento e controle (eds Tundisi JG, Matsumura-Tundisi T & Galli CS), pp. 1-16. The International Institute of Ecology, São Carlos.
48. Ratnasingham S, Hebert PDN (2007) BOLD: the Barcode of Life Data System (www.barcodinglife.org). Molecular Ecology Notes, 7, 355-364.
49. Reis RE, Kullander SO, Ferrais CJ Jr (Eds.) (2003) Checklist of the Freshwater Fishes of South and Central America. EPIDUCRS, Porto Alegre, Brazil.
50. Ringuelet RA (1975) Zoogeografía y ecología de los peces de agua continentales de Argentina y consideraciones sobre las áreas ictiológicas de América del Sur. Ecosur, 2, 1-122.
51. Rodriguez MS, Reis RE (2008) Taxonomic review of Rineloricaria (Loricariidae: Loricariinae) from the Laguna dos Patos drainage, Southern Brazil, with the description of two new species and the recognition of two species groups. Copeia, 2, 333-349.
52. Rosso JJ (2006) Peces pampeanos: guía y ecología. Literature of Latin America, Buenos Aires, 224p.
53. Rosso JJ, Fernández Cirelli A (2012) Effects of land use on environmental conditions and macrophytes in prairie lotic ecosystems. Limnologica, http://dx.doi.org/10.1016/j.limno.2012.06.001.
54. Rosso JJ, Quirós R (2009) Interactive effects of abiotic, hydrological and anthropogenic factors on fish abundance and distribution in natural run-of-the-river shallow lakes. River Research and Applications, 25, 713-733.
55. Rosso JJ, Quirós R (2010) Patterns in fish species composition and assemblage structure in the upper Salado River lakes, Pampa Plain, Argentina. Neotropical Ichthyology, 8, 135-144.
56. Rubinoff D, Holland BS (2005) Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Systematic Biology, 54, 92-961.
57. Ruocco NL, Lucifora LO, Díaz de Astarloa JM, Mabragaña E, Delpiani SM (2012) Morphology and DNA barcoding reveal a new species of eagle ray from the Southwestern Atlantic: Myliobatis ridens sp. nov. (Chondrichthyes, Myliobatiformes, Myliobatidae). Zoological Studies (in press).
58. Smith PJ, Steinke D, McMillan PJ et al. (2011) DNA barcoding highlights a cryptic species of grenadier Macrourus in the Southern Ocean. Journal of Fish Biology, 78, 355-365.
59. Steinke D, Hanner R (2010) The FISH-BOL collaborators' protocol. Mitochondrial DNA, 21, 1-5.
60. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.
61. Triantafyllidis A, Bobori D, Koliamitra C et al. (2011) DNA barcoding analysis of fish species diversity in four north Greek lakes. Mitochondrial DNA, 22, 37-42.
62. Valdez-Moreno M, Ivanova NV, Elías-Gutiérrez M, Contreras-Balderas S, Hebert PDN (2009) Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. Journal of Fish Biology, 74, 377-402.
63. Vari RP, Malabarba LR (1998) Neotropical ichthyology: an overview. In: Phylogeny and Classification of Neotropical Fishes (eds Malabarba LR, Reis RE, Vari RP, Lucena ZMS & Lucena CAS), pp. 1-12. EDIPUCRS, Porto Alegre.
64. Ward RD (2009) DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology Resources, 9, 1077-1085.
65. Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN (2005) DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society B, 360, 1847-1857.
66. Ward RD, Hanner R, Hebert PDN (2009) The campaign to DNA barcode all fishes, FISH-BOL. Journal of Fish Biology, 74, 329-356.