Evidence of multiple introductions of beak and feather disease virus into the Pacific islands of Nouvelle-Calédonie (New Caledonia)

Journal of General Virology

Volumn 93, Issue PART 11, 2012, Pages 2466-2472

  Julian, Laurel ^a   Lorenzo, Almudena ^b   Chenuet, Jean Paul ^b   Bonzon, Marianne ^b   Marchal, Celine ^c   Vignon, Laurent ^b   Collings, David A ^a   Walters, Matthew ^a   Jackson, Bethany ^d   Varsani, Arvind ^a,e  

^a UNIVERSITY OF CANTERBURY   (New Zealand)

^b Service des Aires Aménagées Protégé es   (New Zealand)

^c Port Laguerre ^*  (New Zealand)

^d New Zealand Centre for Conservation Medicine   (New Zealand)

^e UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BEAK AND FEATHER DISEASE; BIRD; CIRCOVIRUS; CYANORAMPHUS SAISSETI; NEW CALEDONIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PACIFIC ISLANDS; PHYLOGENY; PRIORITY JOURNAL; SPECIES INTRODUCTION; TRICHOGLOSSUS HAEMATODUS DEPLANCHII; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN;

ANIMALS; BIRD DISEASES; CIRCOVIRIDAE INFECTIONS; CIRCOVIRUS; FEATHERS; GENETIC VARIATION; MOLECULAR SEQUENCE DATA; NEW CALEDONIA; PARROTS; PHYLOGENY; SPECIES SPECIFICITY;

EID: 84867527663     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.045575-0     Document Type: Article

References (31)

1. Anisimova, M. & Gascuel, O. (2006). Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol 55, 539-552.
2. Boni, M. F., Posada, D. & Feldman, M. W. (2007). An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176, 1035-1047.
3. Delport, W., Poon, A. F. Y., Frost, S. D. W. & Kosakovsky Pond, S. L. (2010). Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26, 2455-2457.
4. Forshaw, J. M. (2010). Parrots of the World. Melbourne, Australia: CSIRO publishing.
5. Gibbs, M. J., Armstrong, J. S. & Gibbs, A. J. (2000). Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16, 573-582.
6. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
7. Heath, L., Martin, D. P., Warburton, L., Perrin, M., Horsfield, W., Kingsley, C., Rybicki, E. P. & Williamson, A. L. (2004). Evidence of unique genotypes of beak and feather disease virus in southern Africa. J Virol 78, 9277-9284.
8. Kosakovsky Pond, S. L. & Frost, S. D. W. (2005). Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22, 1208-1222.
9. Kosakovsky Pond, S. L., Posada, D., Gravenor, M. B., Woelk, C. H. & Frost, S. D. W. (2006). Automated phylogenetic detection of recombination using a genetic algorithm. Mol Biol Evol 23, 1891-1901.
10. Lefeuvre, P., Lett, J. M., Varsani, A. & Martin, D. P. (2009). Widely conserved recombination patterns among single-stranded DNA viruses. J Virol 83, 2697-2707.
11. Martin, D. & Rybicki, E. (2000). RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562-563.
12. Martin, D. P., Posada, D., Crandall, K. A. & Williamson, C. (2005). A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res Hum Retroviruses 21, 98-102.
13. Martin, D. P., Lemey, P., Lott, M., Moulton, V., Posada, D. & Lefeuvre, P. (2010). RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462-2463.
14. Massaro, M., Ortiz-Catedral, L., Julian, L., Galbraith, J. A., Kurenbach, B., Kearvell, J., Kemp, J., van Hal, J., Elkington, S. & other authors (2012). Molecular characterisation of beak and feather disease virus (BFDV) in New Zealand and its implications for managing an infectious disease. Arch Virol 157, 1651-1663.
15. Niagro, F. D., Forsthoefel, A. N., Lawther, R. P., Kamalanathan, L., Ritchie, B. W., Latimer, K. S. & Lukert, P. D. (1998). Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses. Arch Virol 143, 1723-1744.
16. Ortiz-Catedral, L., Kurenbach, B., Massaro, M., McInnes, K., Brunton, D. H., Hauber, M. E., Martin, D. P. & Varsani, A. (2010). A new isolate of beak and feather disease virus from endemic wild redfronted parakeets (Cyanoramphus novaezelandiae) in New Zealand. Arch Virol 155, 613-620.
17. Padidam, M., Sawyer, S. & Fauquet, C. M. (1999). Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218-225.
18. Pass, D. A. & Perry, R. A. (1984). The pathology of psittacine beak and feather disease. Aust Vet J 61, 69-74.
19. Piasecki, T., Kurenbach, B., Chrza{ogonek}stek, K., Bednarek, K., Kraberger, S., Martin, D. P. & Varsani, A. (2012). Molecular characterisation of an avihepadnavirus isolated from Psittacula krameri (ring-necked parrot). Arch Virol 157, 585-590.
20. Posada, D. & Crandall, K. A. (2001). Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Natl Acad Sci U S A 98, 13757-13762.
21. Rahaus, M., Desloges, N., Probst, S., Loebbert, B., Lantermann, W. & Wolff, M. H. (2008). Detection of beak and feather disease virus DNA in embryonated eggs of psittacine birds. Vet Med (Praha) 53, 53-58.
22. Ritchie, B. W., Niagro, F. D., Lukert, P. D., Steffens, W. L., III & Latimer, K. S. (1989). Characterization of a new virus from cockatoos with psittacine beak and feather disease. Virology 171, 83-88.
23. Ritchie, B. W., Niagro, F. D., Latimer, K. S., Steffens, W. L., Pesti, D., Ancona, J. & Lukert, P. D. (1991). Routes and prevalence of shedding of psittacine beak and feather disease virus. Am J Vet Res 52, 1804-1809.
24. Ritchie, B. W., Gregory, C. R., Latimer, K. S., Pesti, D., Campagnoli, R. & Lukert, P. D. (2000). A review of the most common viruses affecting Psittaciformes. Int Zoo Yearb 37, 257-273.
25. Ritchie, P. A., Anderson, I. L. & Lambert, D. M. (2003). Evidence for specificity of psittacine beak and feather disease viruses among avian hosts. Virology 306, 109-115.
26. Smith, J. M. (1992). Analyzing the mosaic structure of genes. J Mol Evol 34, 126-129.
27. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
28. Todd, D. (2000). Circoviruses: immunosuppressive threats to avian species: a review. Avian Pathol 29, 373-394.
29. Tomasek, O. & Tukac, V. (2007). Psittacine circovirus infection in parakeets of the genus Eunymphicus and treatment with b-(1,3/1,6)-D-glucan. Avian Dis 51, 989-991.
30. Varsani, A., de Villiers, G. K., Regnard, G. L., Bragg, R. R., Kondiah, K., Hitzeroth, I. I. & Rybicki, E. P. (2010). A unique isolate of beak and feather disease virus isolated from budgerigars (Melopsittacus undulatus) in South Africa. Arch Virol 155, 435-439.
31. Varsani, A., Regnard, G. L., Bragg, R., Hitzeroth, I. I. & Rybicki, E. P. (2011). Global genetic diversity and geographical and host-species distribution of beak and feather disease virus isolates. J Gen Virol 92, 752-767.