메뉴 건너뛰기




Volumn 7, Issue 10, 2012, Pages

Thermoplasticity in the plant circadian clock: How plants tell the time-perature

Author keywords

Alternative splicing; Circadian; Clock; Temperature; Temperature compensation; Temperature perception

Indexed keywords

ARABIDOPSIS PROTEIN; REVEILLE 8, PROTEIN ARABIDOPSIS; TRANSCRIPTION FACTOR;

EID: 84867482238     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (26)

References (40)
  • 1
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • PMID:18978789
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat Genet 2008; 40:1413-5; PMID:18978789; http://dx.doi.org/10.1038/ng.259.
    • (2008) Nat Genet , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 2
    • 84861890038 scopus 로고    scopus 로고
    • Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis
    • PMID:22391557
    • Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res 2012; 22:1184-95; PMID:22391557; http://dx.doi.org/10.1101/gr.134106.111.
    • (2012) Genome Res , vol.22 , pp. 1184-1195
    • Marquez, Y.1    Brown, J.W.2    Simpson, C.3    Barta, A.4    Kalyna, M.5
  • 3
    • 74949084336 scopus 로고    scopus 로고
    • Genome-wide mapping of alternative splicing in Arabidopsis thaliana
    • PMID:19858364
    • Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, et al. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res 2010; 20:45-58; PMID:19858364; http://dx.doi.org/10.1101/gr.093302.109.
    • (2010) Genome Res , vol.20 , pp. 45-58
    • Filichkin, S.A.1    Priest, H.D.2    Givan, S.A.3    Shen, R.4    Bryant, D.W.5    Fox, S.E.6
  • 4
    • 0142245713 scopus 로고    scopus 로고
    • Alternative splicing and proteome diversity in plants: The tip of the iceberg has just emerged
    • PMID:14557042
    • Kazan K. Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged. Trends Plant Sci 2003; 8:468-71; PMID:14557042; http://dx.doi.org/10.1016/j.tplants.2003.09.001.
    • (2003) Trends Plant Sci , vol.8 , pp. 468-471
    • Kazan, K.1
  • 5
    • 4844222571 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences
    • PMID:15452276
    • Iida K, Seki M, Sakurai T, Satou M, Akiyama K, Toyoda T, et al. Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences. Nucleic Acids Res 2004; 32:5096-103; PMID:15452276; http://dx.doi.org/10.1093/nar/gkh845.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5096-5103
    • Iida, K.1    Seki, M.2    Sakurai, T.3    Satou, M.4    Akiyama, K.5    Toyoda, T.6
  • 6
    • 79956213953 scopus 로고    scopus 로고
    • A role for SR proteins in plant stress responses
    • PMID:21258207
    • Duque P. A role for SR proteins in plant stress responses. Plant Signal Behav 2011; 6:49-54; PMID:21258207; http://dx.doi.org/10.4161/psb.6.1.14063.
    • (2011) Plant Signal Behav , vol.6 , pp. 49-54
    • Duque, P.1
  • 7
    • 79955887707 scopus 로고    scopus 로고
    • Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism
    • PMID:21556057
    • Seo PJ, Kim MJ, Ryu JY, Jeong EY, Park CM. Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Nat Commun 2011; 2:303; PMID:21556057; http://dx.doi.org/10.1038/ncomms1303.
    • (2011) Nat Commun , vol.2 , pp. 303
    • Seo, P.J.1    Kim, M.J.2    Ryu, J.Y.3    Jeong, E.Y.4    Park, C.M.5
  • 8
    • 77954417924 scopus 로고    scopus 로고
    • Conserved alternative splicing of Arabidopsis transthyretin-like determines protein localization and S-allantoin synthesis in peroxisomes
    • PMID:20511299
    • Lamberto I, Percudani R, Gatti R, Folli C, Petrucco S. Conserved alternative splicing of Arabidopsis transthyretin-like determines protein localization and S-allantoin synthesis in peroxisomes. Plant Cell 2010; 22:1564-74; PMID:20511299; http://dx.doi.org/10.1105/tpc.109.070102.
    • (2010) Plant Cell , vol.22 , pp. 1564-1574
    • Lamberto, I.1    Percudani, R.2    Gatti, R.3    Folli, C.4    Petrucco, S.5
  • 9
    • 67650189015 scopus 로고    scopus 로고
    • Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development
    • PMID:19403727
    • Zhang XN, Mount SM. Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development. Plant Physiol 2009; 150:1450-8; PMID:19403727; http://dx.doi.org/10.1104/pp.109.138180.
    • (2009) Plant Physiol , vol.150 , pp. 1450-1458
    • Zhang, X.N.1    Mount, S.M.2
  • 10
    • 65449181986 scopus 로고    scopus 로고
    • Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome
    • PMID:19358722
    • Severing EI, van Dijk AD, Stiekema WJ, van Ham RC. Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome. BMC Genomics 2009; 10:154; PMID:19358722; http://dx.doi.org/10.1186/1471-2164-10-154.
    • (2009) BMC Genomics , vol.10 , pp. 154
    • Severing, E.I.1    van Dijk, A.D.2    Stiekema, W.J.3    van Ham, R.C.4
  • 11
    • 79955925635 scopus 로고    scopus 로고
    • Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data
    • PMID:21575182
    • Severing EI, van Dijk AD, van Ham RC. Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data. BMC Plant Biol 2011; 11:82; PMID:21575182; http://dx.doi.org/10.1186/1471-2229-11-82.
    • (2011) BMC Plant Biol , vol.11 , pp. 82
    • Severing, E.I.1    van Dijk, A.D.2    van Ham, R.C.3
  • 13
    • 77949904260 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in human cells: Mechanistic insights, functions beyond quality control and the double-life of NMD factors
    • PMID:19859661
    • Nicholson P, Yepiskoposyan H, Metze S, Zamudio Orozco R, Kleinschmidt N, Mühlemann O. Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Cell Mol Life Sci 2010; 67:677-700; PMID:19859661; http://dx.doi.org/10.1007/s00018-009-0177-1.
    • (2010) Cell Mol Life Sci , vol.67 , pp. 677-700
    • Nicholson, P.1    Yepiskoposyan, H.2    Metze, S.3    Zamudio Orozco, R.4    Kleinschmidt, N.5    Mühlemann, O.6
  • 14
    • 84859293997 scopus 로고    scopus 로고
    • Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
    • PMID:22127866
    • Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, et al. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Res 2012; 40:2454-69; PMID:22127866; http://dx.doi.org/10.1093/nar/gkr932.
    • (2012) Nucleic Acids Res , vol.40 , pp. 2454-2469
    • Kalyna, M.1    Simpson, C.G.2    Syed, N.H.3    Lewandowska, D.4    Marquez, Y.5    Kusenda, B.6
  • 15
    • 84860128193 scopus 로고    scopus 로고
    • Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes
    • PMID:22408072
    • James AB, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, et al. Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes. Plant Cell 2012; 24:961-81; PMID:22408072; http://dx.doi.org/10.1105/tpc.111.093948.
    • (2012) Plant Cell , vol.24 , pp. 961-981
    • James, A.B.1    Syed, N.H.2    Bordage, S.3    Marshall, J.4    Nimmo, G.A.5    Jenkins, G.I.6
  • 16
    • 0038650889 scopus 로고    scopus 로고
    • Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity
    • PMID:12736379
    • Michael TP, Salome PA, McClung CR. Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A 2003; 100:6878-83; PMID:12736379; http://dx.doi.org/10.1073/pnas.1131995100.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 6878-6883
    • Michael, T.P.1    Salome, P.A.2    McClung, C.R.3
  • 17
    • 84864440018 scopus 로고    scopus 로고
    • A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses in Arabidopsis
    • PMID:22715042
    • Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, et al. A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses in Arabidopsis. Plant Cell 2012; PMID:22715042; http://dx.doi.org/10.1105/tpc.112.098723.
    • (2012) Plant Cell
    • Seo, P.J.1    Park, M.J.2    Lim, M.H.3    Kim, S.G.4    Lee, M.5    Baldwin, I.T.6
  • 18
    • 79953730633 scopus 로고    scopus 로고
    • REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock
    • PMID:21483796
    • Rawat R, Takahashi N, Hsu PY, Jones MA, Schwartz J, Salemi MR, et al. REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock. PLoS Genet 2011; 7:e1001350; PMID:21483796; http://dx.doi.org/10.1371/journal.pgen.1001350.
    • (2011) PLoS Genet , vol.7
    • Rawat, R.1    Takahashi, N.2    Hsu, P.Y.3    Jones, M.A.4    Schwartz, J.5    Salemi, M.R.6
  • 19
    • 79955007772 scopus 로고    scopus 로고
    • Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation
    • PMID:21205033
    • Farinas B, Mas P. Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation. Plant J 2011; 66:318-29; PMID:21205033; http://dx.doi.org/10.1111/j.1365-313X.2011.04484.x.
    • (2011) Plant J , vol.66 , pp. 318-329
    • Farinas, B.1    Mas, P.2
  • 20
    • 78650442768 scopus 로고    scopus 로고
    • Ambient thermometers in plants: From physiological outputs towards mechanisms of thermal sensing
    • PMID:21172632
    • McClung CR, Davis SJ. Ambient thermometers in plants: from physiological outputs towards mechanisms of thermal sensing. Curr Biol 2010; 20:R1086-92; PMID:21172632; http://dx.doi.org/10.1016/j.cub.2010.10.035.
    • (2010) Curr Biol , vol.20
    • McClung, C.R.1    Davis, S.J.2
  • 21
    • 60149093076 scopus 로고    scopus 로고
    • Effects of genetic perturbation on seasonal life history plasticity
    • PMID:19150810
    • Wilczek AM, Roe JL, Knapp MC, Cooper MD, Lopez-Gallego C, Martin LJ, et al. Effects of genetic perturbation on seasonal life history plasticity. Science 2009; 323:930-4; PMID:19150810; http://dx.doi.org/10.1126/science.1165826.
    • (2009) Science , vol.323 , pp. 930-934
    • Wilczek, A.M.1    Roe, J.L.2    Knapp, M.C.3    Cooper, M.D.4    Lopez-Gallego, C.5    Martin, L.J.6
  • 22
    • 84859926266 scopus 로고    scopus 로고
    • Unexpected features of Drosophila circadian behavioural rhythms under natural conditions
    • PMID:22495312
    • Vanin S, Bhutani S, Montelli S, Menegazzi P, Green EW, Pegoraro M, et al. Unexpected features of Drosophila circadian behavioural rhythms under natural conditions. Nature 2012; 484:371-5; PMID:22495312; http://dx.doi.org/10.1038/nature10991.
    • (2012) Nature , vol.484 , pp. 371-375
    • Vanin, S.1    Bhutani, S.2    Montelli, S.3    Menegazzi, P.4    Green, E.W.5    Pegoraro, M.6
  • 24
    • 50649124284 scopus 로고    scopus 로고
    • Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome
    • PMID:18375597
    • Bieniawska Z, Espinoza C, Schlereth A, Sulpice R, Hincha DK, Hannah MA. Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiol 2008; 147:263-79; PMID:18375597; http://dx.doi.org/10.1104/pp.108.118059.
    • (2008) Plant Physiol , vol.147 , pp. 263-279
    • Bieniawska, Z.1    Espinoza, C.2    Schlereth, A.3    Sulpice, R.4    Hincha, D.K.5    Hannah, M.A.6
  • 25
    • 55849115259 scopus 로고    scopus 로고
    • Overall alteration of circadian clock gene expression in the chestnut cold response
    • PMID:18958171
    • Ibañez C, Ramos A, Acebo P, Contreras A, Casado R, Allona I, et al. Overall alteration of circadian clock gene expression in the chestnut cold response. PLoS One 2008; 3:e3567; PMID:18958171; http://dx.doi.org/10.1371/journal.pone.0003567.
    • (2008) PLoS One , vol.3
    • Ibañez, C.1    Ramos, A.2    Acebo, P.3    Contreras, A.4    Casado, R.5    Allona, I.6
  • 26
    • 77955677153 scopus 로고    scopus 로고
    • Circadian clock components regulate entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees
    • PMID:20530613
    • Ibáñez C, Kozarewa I, Johansson M, Ogren E, Rohde A, Eriksson ME. Circadian clock components regulate entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees. Plant Physiol 2010; 153:1823-33; PMID:20530613; http://dx.doi.org/10.1104/pp.110.158220.
    • (2010) Plant Physiol , vol.153 , pp. 1823-1833
    • Ibáñez, C.1    Kozarewa, I.2    Johansson, M.3    Ogren, E.4    Rohde, A.5    Eriksson, M.E.6
  • 27
    • 20444382245 scopus 로고    scopus 로고
    • PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock
    • PMID:15705949
    • Salomé PA, McClung CR. PSEUDO-RESPONSE REGULATOR 7 and 9 are partially redundant genes essential for the temperature responsiveness of the Arabidopsis circadian clock. Plant Cell 2005; 17:791-803; PMID:15705949; http://dx.doi.org/10.1105/tpc.104.029504.
    • (2005) Plant Cell , vol.17 , pp. 791-803
    • Salomé, P.A.1    McClung, C.R.2
  • 28
    • 20444367685 scopus 로고    scopus 로고
    • Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock
    • PMID:15781708
    • Edwards KD, Lynn JR, Gyula P, Nagy F, Millar AJ. Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics 2005; 170:387-400; PMID:15781708; http://dx.doi.org/10.1534/genetics.104.035238.
    • (2005) Genetics , vol.170 , pp. 387-400
    • Edwards, K.D.1    Lynn, J.R.2    Gyula, P.3    Nagy, F.4    Millar, A.J.5
  • 29
    • 33646510841 scopus 로고    scopus 로고
    • FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock
    • PMID:16473970
    • Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JC, Lynn JR, et al. FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 2006; 18:639-50; PMID:16473970; http://dx.doi.org/10.1105/tpc.105.038315.
    • (2006) Plant Cell , vol.18 , pp. 639-650
    • Edwards, K.D.1    Anderson, P.E.2    Hall, A.3    Salathia, N.S.4    Locke, J.C.5    Lynn, J.R.6
  • 30
    • 33745453173 scopus 로고    scopus 로고
    • The molecular basis of temperature compensation in the Arabidopsis circadian clock
    • PMID:16617099
    • Gould PD, Locke JC, Larue C, Southern MM, Davis SJ, Hanano S, et al. The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell 2006; 18:1177-87; PMID:16617099; http://dx.doi.org/10.1105/tpc.105.039990.
    • (2006) Plant Cell , vol.18 , pp. 1177-1187
    • Gould, P.D.1    Locke, J.C.2    Larue, C.3    Southern, M.M.4    Davis, S.J.5    Hanano, S.6
  • 31
    • 78650894699 scopus 로고    scopus 로고
    • The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation
    • PMID:21098730
    • Salomé PA, Weigel D, McClung CR. The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation. Plant Cell 2010; 22:3650-61; PMID:21098730; http://dx.doi.org/10.1105/tpc.110.079087.
    • (2010) Plant Cell , vol.22 , pp. 3650-3661
    • Salomé, P.A.1    Weigel, D.2    McClung, C.R.3
  • 32
    • 18744413036 scopus 로고    scopus 로고
    • Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock
    • PMID:15728337
    • Fowler SG, Cook D, Thomashow MF. Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol 2005; 137:961-8; PMID:15728337; http://dx.doi.org/10.1104/pp.104.058354.
    • (2005) Plant Physiol , vol.137 , pp. 961-968
    • Fowler, S.G.1    Cook, D.2    Thomashow, M.F.3
  • 33
    • 70349852402 scopus 로고    scopus 로고
    • A role for circadian evening elements in cold-regulated gene expression in Arabidopsis
    • PMID:19566593
    • Mikkelsen MD, Thomashow MF. A role for circadian evening elements in cold-regulated gene expression in Arabidopsis. Plant J 2009; 60:328-39; PMID:19566593; http://dx.doi.org/10.1111/j.1365-313X.2009.03957.x.
    • (2009) Plant J , vol.60 , pp. 328-339
    • Mikkelsen, M.D.1    Thomashow, M.F.2
  • 34
    • 48249145380 scopus 로고    scopus 로고
    • Temperature perception and signal transduction in plants
    • PMID:18466219
    • Penfield S. Temperature perception and signal transduction in plants. New Phytol 2008; 179:615-28; PMID:18466219; http://dx.doi.org/10.1111/j.1469-8137.2008.02478.x.
    • (2008) New Phytol , vol.179 , pp. 615-628
    • Penfield, S.1
  • 35
    • 77954036057 scopus 로고    scopus 로고
    • How plants sense temperature
    • Ruelland E, Zachowski A. How plants sense temperature. Environ Exp Bot 2010; 69:225-32; http://dx.doi.org/10.1016/j.envexpbot.2010.05.011.
    • (2010) Environ Exp Bot , vol.69 , pp. 225-232
    • Ruelland, E.1    Zachowski, A.2
  • 36
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • PMID:19575587
    • Harmer SL. The circadian system in higher plants. Annu Rev Plant Biol 2009; 60:357-77; PMID:19575587; http://dx.doi.org/10.1146/annurev.arplant.043008.092054.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 37
    • 84867476295 scopus 로고    scopus 로고
    • A short history of temperature compensation
    • In: Matthys RJ, ed. Oxford; New York: Oxford University Press
    • Matthys RJ. A short history of temperature compensation. In: Matthys RJ, ed. Accurate clock pendulums. Oxford; New York: Oxford University Press, 2004:7-12.
    • (2004) Accurate clock pendulums , pp. 7-12
    • Matthys, R.J.1
  • 39
    • 78650446132 scopus 로고    scopus 로고
    • Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana
    • PMID:21097700
    • Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR. Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2010; 107:21211-6; PMID:21097700; http://dx.doi.org/10.1073/pnas.1011987107.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 21211-21216
    • Hong, S.1    Song, H.R.2    Lutz, K.3    Kerstetter, R.A.4    Michael, T.P.5    McClung, C.R.6
  • 40
    • 78149282260 scopus 로고    scopus 로고
    • A methyl transferase links the circadian clock to the regulation of alternative splicing
    • PMID:20962777
    • Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, et al. A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 2010; 468:112-6; PMID:20962777; http://dx.doi.org/10.1038/nature09470.
    • (2010) Nature , vol.468 , pp. 112-116
    • Sanchez, S.E.1    Petrillo, E.2    Beckwith, E.J.3    Zhang, X.4    Rugnone, M.L.5    Hernando, C.E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.