-
1
-
-
79953066553
-
Trastuzumab and beyond: Sequencing cancer genomes and predicting molecular networks
-
Roukos, D. H. Trastuzumab and beyond: sequencing cancer genomes and predicting molecular networks Pharmacogenomics J. 2011, 11 (2) 81-92
-
(2011)
Pharmacogenomics J.
, vol.11
, Issue.2
, pp. 81-92
-
-
Roukos, D.H.1
-
2
-
-
73349108075
-
Molecular diagnostics in acute leukemias
-
Bacher, U; Schnittger, S; Haferlach, C; Haferlach, T. Molecular diagnostics in acute leukemias Clin. Chem. Lab Med. 2009, 47 (11) 1333-1341
-
(2009)
Clin. Chem. Lab Med.
, vol.47
, Issue.11
, pp. 1333-1341
-
-
Bacher, U.1
Schnittger, S.2
Haferlach, C.3
Haferlach, T.4
-
3
-
-
70450189297
-
Gemcitabine and arabinosylcytosin pharmacogenomics: Genome-wide association and drug response biomarkers
-
Li, L; Fridley, B. L.; Kalari, K; Jenkins, G; Batzler, A; Weinshilboum, R. M. Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers PLoS One 2009, 4 (11) e7765
-
(2009)
PLoS One
, vol.4
, Issue.11
, pp. 7765
-
-
Li, L.1
Fridley, B.L.2
Kalari, K.3
Jenkins, G.4
Batzler, A.5
Weinshilboum, R.M.6
-
4
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner, J. R.; Iyer, M. K.; Balbin, O. A.; Dhanasekaran, S. M.; Cao, Q; Brenner, J. C. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression Nat. Biotechnol. 2011, 29, 742-749
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
-
5
-
-
79959875910
-
DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer
-
Kobayashi, Y; Absher, D. M.; Gulzar, Z. G.; Young, S. R.; McKenney, J. K.; Peehl, D. M. DNA methylation profiling reveals novel biomarkers and important roles for DNA methyltransferases in prostate cancer Genome Res. 2011, 21 (7) 1017-1027
-
(2011)
Genome Res.
, vol.21
, Issue.7
, pp. 1017-1027
-
-
Kobayashi, Y.1
Absher, D.M.2
Gulzar, Z.G.3
Young, S.R.4
Mckenney, J.K.5
Peehl, D.M.6
-
6
-
-
75549089556
-
Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer
-
Cheung, H. H.; Lee, T. L.; Davis, A. J.; Taft, D. H.; Rennert, O. M.; Chan, W. Y. Genome-wide DNA methylation profiling reveals novel epigenetically regulated genes and non-coding RNAs in human testicular cancer Br. J. Cancer 2010, 102 (2) 419-427
-
(2010)
Br. J. Cancer
, vol.102
, Issue.2
, pp. 419-427
-
-
Cheung, H.H.1
Lee, T.L.2
Davis, A.J.3
Taft, D.H.4
Rennert, O.M.5
Chan, W.Y.6
-
7
-
-
73249137306
-
DNA methylation of cancer genome
-
Cheung, H. H.; Lee, T. L.; Rennert, O. M.; Chan, W. Y. DNA methylation of cancer genome Birth Defects Res. C Embryo Today 2009, 87 (4) 335-350
-
(2009)
Birth Defects Res. C Embryo Today
, vol.87
, Issue.4
, pp. 335-350
-
-
Cheung, H.H.1
Lee, T.L.2
Rennert, O.M.3
Chan, W.Y.4
-
8
-
-
77957102468
-
Personalized medicine: Marking a new epoch in cancer patient management
-
Diamandis, M; White, N. M.; Yousef, G. M. Personalized medicine: marking a new epoch in cancer patient management Mol. Cancer Res. 2010, 8 (9) 1175-1187
-
(2010)
Mol. Cancer Res.
, vol.8
, Issue.9
, pp. 1175-1187
-
-
Diamandis, M.1
White, N.M.2
Yousef, G.M.3
-
9
-
-
77951650200
-
Role of spectral counting in quantitative proteomics
-
Lundgren, D. H.; Hwang, S. I.; Wu, L; Han, D. K. Role of spectral counting in quantitative proteomics Expert Rev. Proteomics 2010, 7 (1) 39-53
-
(2010)
Expert Rev. Proteomics
, vol.7
, Issue.1
, pp. 39-53
-
-
Lundgren, D.H.1
Hwang, S.I.2
Wu, L.3
Han, D.K.4
-
10
-
-
33847174067
-
Protein labeling by iTRAQ: A new tool for quantitative mass spectrometry in proteome research
-
Wiese, S; Reidegeld, K. A.; Meyer, H. E.; Warscheid, B. Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research Proteomics. 2007, 7 (3) 340-350
-
(2007)
Proteomics.
, vol.7
, Issue.3
, pp. 340-350
-
-
Wiese, S.1
Reidegeld, K.A.2
Meyer, H.E.3
Warscheid, B.4
-
11
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E.; Blagoev, B; Kratchmarova, I; Kristensen, D. B.; Steen, H; Pandey, A Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics Mol. Cell Proteomics 2002, 1 (5) 376-386
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.5
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
-
12
-
-
78649694616
-
Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: An NCI-CPTC initiative perspective
-
Rodriguez, H; Rivers, R; Kinsinger, C; Mesri, M; Hiltke, T; Rahbar, A Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective Proteomics Clin. Appl. 2010, 4 (12) 904-914
-
(2010)
Proteomics Clin. Appl.
, vol.4
, Issue.12
, pp. 904-914
-
-
Rodriguez, H.1
Rivers, R.2
Kinsinger, C.3
Mesri, M.4
Hiltke, T.5
Rahbar, A.6
-
13
-
-
10744233766
-
Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards
-
Wang, W; Zhou, H; Lin, H; Roy, S; Shaler, T. A.; Hill, L. R. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards Anal. Chem. 2003, 75 (18) 4818-4826
-
(2003)
Anal. Chem.
, vol.75
, Issue.18
, pp. 4818-4826
-
-
Wang, W.1
Zhou, H.2
Lin, H.3
Roy, S.4
Shaler, T.A.5
Hill, L.R.6
-
14
-
-
80053337795
-
Genetic variation shapes protein networks mainly through non-transcriptional mechanisms
-
Foss, E. J.; Radulovic, D; Shaffer, S. A.; Goodlett, D. R.; Kruglyak, L; Bedalov, A. Genetic variation shapes protein networks mainly through non-transcriptional mechanisms PLoS Biol. 2011, 9 (9) e1001144
-
(2011)
PLoS Biol.
, vol.9
, Issue.9
, pp. 1001144
-
-
Foss, E.J.1
Radulovic, D.2
Shaffer, S.A.3
Goodlett, D.R.4
Kruglyak, L.5
Bedalov, A.6
-
15
-
-
35648969195
-
Genetic basis of proteome variation in yeast
-
Foss, E. J.; Radulovic, D; Shaffer, S. A.; Ruderfer, D. M.; Bedalov, A; Goodlett, D. R. Genetic basis of proteome variation in yeast Nat. Genet. 2007 Nov, 39 (11) 1369-1375
-
(2007)
Nat. Genet.
, vol.39
, Issue.11
, pp. 1369-1375
-
-
Foss, E.J.1
Radulovic, D.2
Shaffer, S.A.3
Ruderfer, D.M.4
Bedalov, A.5
Goodlett, D.R.6
-
16
-
-
70349436819
-
Protein quantification across hundreds of experimental conditions
-
Khan, Z; Bloom, J. S.; Garcia, B. A.; Singh, M; Kruglyak, L. Protein quantification across hundreds of experimental conditions Proc. Natl. Acad. Sci. U. S. A. 2009, 106 (37) 15544-15548
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, Issue.37
, pp. 15544-15548
-
-
Khan, Z.1
Bloom, J.S.2
Garcia, B.A.3
Singh, M.4
Kruglyak, L.5
-
17
-
-
43249087428
-
MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features
-
Monroe, M. E.; Shaw, J. L.; Daly, D. S.; Adkins, J. N.; Smith, R. D. MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features Comput. Biol. Chem. 2008, 32 (3) 215-217
-
(2008)
Comput. Biol. Chem.
, vol.32
, Issue.3
, pp. 215-217
-
-
Monroe, M.E.1
Shaw, J.L.2
Daly, D.S.3
Adkins, J.N.4
Smith, R.D.5
-
18
-
-
35348965139
-
SuperHirn - A novel tool for high resolution LC-MS-based peptide/protein profiling
-
Mueller, L. N.; Rinner, O; Schmidt, A; Letarte, S; Bodenmiller, B; Brusniak, M. Y. SuperHirn-a novel tool for high resolution LC-MS-based peptide/protein profiling Proteomics 2007, 7 (19) 3470-3480
-
(2007)
Proteomics
, vol.7
, Issue.19
, pp. 3470-3480
-
-
Mueller, L.N.1
Rinner, O.2
Schmidt, A.3
Letarte, S.4
Bodenmiller, B.5
Brusniak, M.Y.6
-
19
-
-
84862316959
-
Mspompare: A framework for quantitative analysis of label-free LC-MS data for comparative biomarker studies
-
M111.015974
-
Hoekman, B; Breitling, R; Suits, F; Bischoff, R; Horvatovich, P. msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative biomarker studies Mol. Cell Proteomics 2012, 11 M111.015974
-
(2012)
Mol. Cell Proteomics
, vol.11
-
-
Hoekman, B.1
Breitling, R.2
Suits, F.3
Bischoff, R.4
Horvatovich, P.5
-
20
-
-
79957477249
-
Shape-based feature matching improves protein identification via LC-MS and tandem MS
-
Noy, K; Towfic, F; Wittenberg, G. M.; Fasulo, D. Shape-based feature matching improves protein identification via LC-MS and tandem MS J. Comput. Biol. 2011, 18 (4) 547-557
-
(2011)
J. Comput. Biol.
, vol.18
, Issue.4
, pp. 547-557
-
-
Noy, K.1
Towfic, F.2
Wittenberg, G.M.3
Fasulo, D.4
-
21
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
Mueller, L. N.; Brusniak, M. Y.; Mani, D. R.; Aebersold, R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data J. Proteome Res. 2008, 7 (1) 51-61
-
(2008)
J. Proteome Res.
, vol.7
, Issue.1
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.Y.2
Mani, D.R.3
Aebersold, R.4
-
22
-
-
14344250874
-
Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry
-
Radulovic, D; Jelveh, S; Ryu, S; Hamilton, T. G.; Foss, E; Mao, Y Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry Mol. Cell Proteomics 2004, 3 (10) 984-997
-
(2004)
Mol. Cell Proteomics
, vol.3
, Issue.10
, pp. 984-997
-
-
Radulovic, D.1
Jelveh, S.2
Ryu, S.3
Hamilton, T.G.4
Foss, E.5
Mao, Y.6
-
23
-
-
20644442887
-
MSight: An image analysis software for liquid chromatography-mass spectrometry
-
Palagi, P. M.; Walther, D; Quadroni, M; Catherinet, S; Burgess, J; Zimmermann-Ivol, C. G. MSight: an image analysis software for liquid chromatography-mass spectrometry Proteomics 2005, 5 (9) 2381-2384
-
(2005)
Proteomics
, vol.5
, Issue.9
, pp. 2381-2384
-
-
Palagi, P.M.1
Walther, D.2
Quadroni, M.3
Catherinet, S.4
Burgess, J.5
Zimmermann-Ivol, C.G.6
-
24
-
-
40549107755
-
Comparative LC-MS: A landscape of peaks and valleys
-
America, A. H.; Cordewener, J. H. Comparative LC-MS: a landscape of peaks and valleys Proteomics 2008, 8 (4) 731-749
-
(2008)
Proteomics
, vol.8
, Issue.4
, pp. 731-749
-
-
America, A.H.1
Cordewener, J.H.2
-
25
-
-
49849099299
-
Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia
-
Forshed, J; Pernemalm, M; Tan, C. S.; Lindberg, M; Kanter, L; Pawitan, Y Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia J. Proteome Res. 2008, 7 (6) 2332-2341
-
(2008)
J. Proteome Res.
, vol.7
, Issue.6
, pp. 2332-2341
-
-
Forshed, J.1
Pernemalm, M.2
Tan, C.S.3
Lindberg, M.4
Kanter, L.5
Pawitan, Y.6
-
26
-
-
16344384887
-
The importance of experimental design in proteomic mass spectrometry experiments: Some cautionary tales
-
Hu, J; Coombes, K. R.; Morris, J. S.; Baggerly, K. A. The importance of experimental design in proteomic mass spectrometry experiments: some cautionary tales Brief Funct. Genomic Proteomic 2005, 3 (4) 322-331
-
(2005)
Brief Funct. Genomic Proteomic
, vol.3
, Issue.4
, pp. 322-331
-
-
Hu, J.1
Coombes, K.R.2
Morris, J.S.3
Baggerly, K.A.4
-
27
-
-
79952953328
-
Reproducibility of SELDI spectra across time and laboratories
-
Diao, L; Clarke, C. H.; Coombes, K. R.; Hamilton, S. R.; Roth, J; Mao, L Reproducibility of SELDI spectra across time and laboratories Cancer Inform. 2011, 10, 45-64
-
(2011)
Cancer Inform.
, vol.10
, pp. 45-64
-
-
Diao, L.1
Clarke, C.H.2
Coombes, K.R.3
Hamilton, S.R.4
Roth, J.5
Mao, L.6
-
28
-
-
13844316757
-
Signal in noise: Evaluating reported reproducibility of serum proteomic tests for ovarian cancer
-
Baggerly, K. A.; Morris, J. S.; Edmonson, S. R.; Coombes, K. R. Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer J. Natl. Cancer Inst. 2005, 97 (4) 307-309
-
(2005)
J. Natl. Cancer Inst.
, vol.97
, Issue.4
, pp. 307-309
-
-
Baggerly, K.A.1
Morris, J.S.2
Edmonson, S.R.3
Coombes, K.R.4
-
29
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P; Vogel, C; Wang, R; Yao, X; Marcotte, E. M. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation Nat. Biotechnol. 2007, 25 (1) 117-124
-
(2007)
Nat. Biotechnol.
, vol.25
, Issue.1
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
30
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P.; Rochon, Y; Franza, B. R.; Aebersold, R. Correlation between protein and mRNA abundance in yeast Mol. Cell. Biol. 1999, 19 (3) 1720-1730
-
(1999)
Mol. Cell. Biol.
, vol.19
, Issue.3
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
31
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates, J. R., 3rd; Eng, J. K.; McCormack, A. L.; Schieltz, D. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database Anal. Chem. 1995, 67 (8) 1426-1436
-
(1995)
Anal. Chem.
, vol.67
, Issue.8
, pp. 1426-1436
-
-
Yates III, J.R.1
Eng, J.K.2
Mccormack, A.L.3
Schieltz, D.4
-
32
-
-
1642317557
-
Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival
-
Chiaretti, S; Li, X; Gentleman, R; Vitale, A; Vignetti, M; Mandelli, F Gene expression profile of adult T-cell acute lymphocytic leukemia identifies distinct subsets of patients with different response to therapy and survival Blood 2004, 103 (7) 2771-2778
-
(2004)
Blood
, vol.103
, Issue.7
, pp. 2771-2778
-
-
Chiaretti, S.1
Li, X.2
Gentleman, R.3
Vitale, A.4
Vignetti, M.5
Mandelli, F.6
-
33
-
-
75749139401
-
CALLA and protein kinase CK2 revisited: Targetable molecules for treating patients with leukemia?
-
Kamen, B. A. CALLA and protein kinase CK2 revisited: targetable molecules for treating patients with leukemia? J. Pediatr. Hematol. Oncol. 2010, 32 (1) 1
-
(2010)
J. Pediatr. Hematol. Oncol.
, vol.32
, Issue.1
, pp. 1
-
-
Kamen, B.A.1
-
34
-
-
23744491374
-
Nicastrin functions as a gamma-secretase-substrate receptor
-
Shah, S; Lee, S. F.; Tabuchi, K; Hao, Y. H.; Yu, C; LaPlant, Q Nicastrin functions as a gamma-secretase-substrate receptor Cell 2005, 122 (3) 435-447
-
(2005)
Cell
, vol.122
, Issue.3
, pp. 435-447
-
-
Shah, S.1
Lee, S.F.2
Tabuchi, K.3
Hao, Y.H.4
Yu, C.5
Laplant, Q.6
-
35
-
-
50849111710
-
Rational targeting of Notch signaling in cancer
-
Rizzo, P; Osipo, C; Foreman, K; Golde, T; Osborne, B; Miele, L. Rational targeting of Notch signaling in cancer Oncogene 2008, 27 (38) 5124-5131
-
(2008)
Oncogene
, vol.27
, Issue.38
, pp. 5124-5131
-
-
Rizzo, P.1
Osipo, C.2
Foreman, K.3
Golde, T.4
Osborne, B.5
Miele, L.6
-
36
-
-
36549022557
-
Identification of genes with abnormal expression changes in acute myeloid leukemia
-
Stirewalt, D. L.; Meshinchi, S; Kopecky, K. J.; Fan, W; Pogosova-Agadjanyan, E. L.; Engel, J. H. Identification of genes with abnormal expression changes in acute myeloid leukemia Genes Chromosomes Cancer 2008, 47 (1) 8-20
-
(2008)
Genes Chromosomes Cancer
, vol.47
, Issue.1
, pp. 8-20
-
-
Stirewalt, D.L.1
Meshinchi, S.2
Kopecky, K.J.3
Fan, W.4
Pogosova-Agadjanyan, E.L.5
Engel, J.H.6
|