-
1
-
-
0035178855
-
A cross-section of the fitness landscape of dihydrofolate reductase
-
Aita T., Iwakura M., Husimi Y. A cross-section of the fitness landscape of dihydrofolate reductase. Protein Eng. 2001, 14(Sep (9)):633-638.
-
(2001)
Protein Eng.
, vol.14
, Issue.9 SEP
, pp. 633-638
-
-
Aita, T.1
Iwakura, M.2
Husimi, Y.3
-
4
-
-
34247881991
-
Analysis of epistatic interactions and fitness landscapes using a new geometric approach
-
Beerenwinkel N., Pachter L., Sturmfels B., Elena S.F., Lenski R.E. Analysis of epistatic interactions and fitness landscapes using a new geometric approach. BMC Evolutionary Biology 2007, 7:60.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 60
-
-
Beerenwinkel, N.1
Pachter, L.2
Sturmfels, B.3
Elena, S.F.4
Lenski, R.E.5
-
5
-
-
9444282038
-
Evidence for positive epistasis in HIV-1
-
Bonhoeffer S., Chappey C., Parkin N.T., Whitcomb J.M., Petropoulos C.J. Evidence for positive epistasis in HIV-1. Science 2004, 306:1547-15501.
-
(2004)
Science
, vol.306
, pp. 1547-15501
-
-
Bonhoeffer, S.1
Chappey, C.2
Parkin, N.T.3
Whitcomb, J.M.4
Petropoulos, C.J.5
-
6
-
-
76549129324
-
Colloquium papers. adaptive landscapes and protein evolution
-
Carnerio M., Hartl D.L. Colloquium papers. adaptive landscapes and protein evolution. Proc. Natl. Acad. Sci. USA 2010, 107(suppl 1):1747-1751.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, Issue.SUPPL. 1
, pp. 1747-1751
-
-
Carnerio, M.1
Hartl, D.L.2
-
7
-
-
84869080438
-
-
Antibiotic resistance landscapes: a quantification of deviation of fitness data from classical models of fitness landscapes (manuscript).
-
Crona, K., Patterson, D., Stack, K., Greene, D., Goulart, C., Mahmudi, M., Jacobs, S.D., Kallmann, M., Barlow, M., 2012. Antibiotic resistance landscapes: a quantification of deviation of fitness data from classical models of fitness landscapes (manuscript).
-
(2012)
-
-
Crona, K.1
Patterson, D.2
Stack, K.3
Greene, D.4
Goulart, C.5
Mahmudi, M.6
Jacobs, S.D.7
Kallmann, M.8
Barlow, M.9
-
8
-
-
84869084762
-
-
Springer-Verlag, Heidelberg
-
De Loera J.A., Rambau J., Santos F. Triangulations. Applications, Structures and Algorithms. Number 25 in Algorithms and Computation in Mathematics 2010, Springer-Verlag, Heidelberg.
-
(2010)
Triangulations. Applications, Structures and Algorithms. Number 25 in Algorithms and Computation in Mathematics
-
-
De Loera, J.A.1
Rambau, J.2
Santos, F.3
-
9
-
-
0032894615
-
Inferring tree models for oncogenesis from comparative genome hybridization data
-
Desper R., Jiang F., Kallioniemi O.P., Moch H., Papadimitriou C.H., Schäffer A.A. Inferring tree models for oncogenesis from comparative genome hybridization data. Comput. Biol. 1999, 6:37-51.
-
(1999)
Comput. Biol.
, vol.6
, pp. 37-51
-
-
Desper, R.1
Jiang, F.2
Kallioniemi, O.P.3
Moch, H.4
Papadimitriou, C.H.5
Schäffer, A.A.6
-
10
-
-
0000017979
-
Evolution in a rugged fitness landscape
-
Flyvbjerg H., Lautrup B. Evolution in a rugged fitness landscape. Phys. Rev. A 1992, 46:6714-6723.
-
(1992)
Phys. Rev. A
, vol.46
, pp. 6714-6723
-
-
Flyvbjerg, H.1
Lautrup, B.2
-
11
-
-
0020740521
-
A simple stochastic gene substitution model
-
Gillespie J.H. A simple stochastic gene substitution model. Theor. Pop. Biol. 1983, 23:202-215.
-
(1983)
Theor. Pop. Biol.
, vol.23
, pp. 202-215
-
-
Gillespie, J.H.1
-
12
-
-
0021715830
-
The molecular clock may be an episodic clock
-
Gillespie J.H. The molecular clock may be an episodic clock. Proc. Natl. Acad. Sci. USA 1984, 81:8009-8013.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 8009-8013
-
-
Gillespie, J.H.1
-
13
-
-
84869088289
-
-
Adaptive landscapes: a second chance for antibiotics (manuscript).
-
Goulart, C., Mahmudi, M., Crona, K., Jacobs, S.D., Kallmann, M., Greene, D., Barlow, M., 2012. Adaptive landscapes: a second chance for antibiotics (manuscript).
-
(2012)
-
-
Goulart, C.1
Mahmudi, M.2
Crona, K.3
Jacobs, S.D.4
Kallmann, M.5
Greene, D.6
Barlow, M.7
-
14
-
-
0023647382
-
Towards a general theory of adaptive walks on rugged landscapes
-
Kauffman S.A., Levin S. Towards a general theory of adaptive walks on rugged landscapes. J. Theor. Biol. 1987, 128:11-45.
-
(1987)
J. Theor. Biol.
, vol.128
, pp. 11-45
-
-
Kauffman, S.A.1
Levin, S.2
-
15
-
-
0024803111
-
The NK model of rugged fitness landscape and its application to maturation of the immune response
-
Kauffman S.A., Weinberger E.D. The NK model of rugged fitness landscape and its application to maturation of the immune response. J. Theor. Biol. 1989, 141:211-245.
-
(1989)
J. Theor. Biol.
, vol.141
, pp. 211-245
-
-
Kauffman, S.A.1
Weinberger, E.D.2
-
16
-
-
0001503634
-
A simple model for the balance between selection and mutation
-
Kingman J.F.C. A simple model for the balance between selection and mutation. J. Appl. Prob. 1978, 15:1-12.
-
(1978)
J. Appl. Prob.
, vol.15
, pp. 1-12
-
-
Kingman, J.F.C.1
-
17
-
-
79957948006
-
In evolution, the sum is less than its part
-
Kryazhimskiy S., Draghi J.A., Plotkin J.B. In evolution, the sum is less than its part. Science 2011, 332:1160-1161.
-
(2011)
Science
, vol.332
, pp. 1160-1161
-
-
Kryazhimskiy, S.1
Draghi, J.A.2
Plotkin, J.B.3
-
19
-
-
0028785881
-
Protein evolution on partially correlated landscapes
-
Macken C.A., Perelson A.S. Protein evolution on partially correlated landscapes. Proc. Natl. Acad. Sci. USA 1995, 92:9657-9661.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9657-9661
-
-
Macken, C.A.1
Perelson, A.S.2
-
20
-
-
42149137884
-
Defining Genetic Interaction
-
Mani R., St.Onge R.P., Hartman J.L., Giaever G., Roth F.P. Defining Genetic Interaction. Proc. Natl. Acad. Sci. USA 2008, 105:3461-3466.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3461-3466
-
-
Mani, R.1
St Onge, R.P.2
Hartman, J.L.3
Giaever, G.4
Roth, F.P.5
-
21
-
-
0014935646
-
Natural selection and the concept of protein space
-
Maynard Smith J. Natural selection and the concept of protein space. Nature 1970, 225:563-564.
-
(1970)
Nature
, vol.225
, pp. 563-564
-
-
Maynard Smith, J.1
-
22
-
-
0036340979
-
The population genetics of adaptation. the adaptation of DNA sequences
-
Orr H.A. The population genetics of adaptation. the adaptation of DNA sequences. Evolution 2002, 56:1317-1330.
-
(2002)
Evolution
, vol.56
, pp. 1317-1330
-
-
Orr, H.A.1
-
23
-
-
33748537738
-
The population genetics of adaptation on correlated fitness landscapes. the block model
-
Orr H.A. The population genetics of adaptation on correlated fitness landscapes. the block model. Evolution 2006, 60:1113-1124.
-
(2006)
Evolution
, vol.60
, pp. 1113-1124
-
-
Orr, H.A.1
-
24
-
-
0036209507
-
Resolving the paradox of sex and recombination
-
Otto S.P., Lenormand T. Resolving the paradox of sex and recombination. Nat. Rev. Genet. 2002, 3:252-261.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 252-261
-
-
Otto, S.P.1
Lenormand, T.2
-
25
-
-
43049128188
-
Evolution in random fitness landscapes. the infinite sites model
-
Park S.C., Krug J. Evolution in random fitness landscapes. the infinite sites model. J. Stat. Mech. 2008, P04014.
-
(2008)
J. Stat. Mech.
-
-
Park, S.C.1
Krug, J.2
-
26
-
-
33846551980
-
Empirical fitness landscapes reveal accessible evolutionary paths
-
Poelwijk F.J., Kiviet D.J., Weinreich D.M., Tans S.J. Empirical fitness landscapes reveal accessible evolutionary paths. Nature 2007, 445:383-386.
-
(2007)
Nature
, vol.445
, pp. 383-386
-
-
Poelwijk, F.J.1
Kiviet, D.J.2
Weinreich, D.M.3
Tans, S.J.4
-
27
-
-
78650592680
-
Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes
-
MAR 7
-
Poelwijk F.J., Sorin T.-N., Kiviet D.J., Tans S.J. Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes. J. Theor. Biol. 2011, 272(Mar 7 (1)):141-144.
-
(2011)
J. Theor. Biol.
, vol.272
, Issue.1
, pp. 141-144
-
-
Poelwijk, F.J.1
Sorin, T.-N.2
Kiviet, D.J.3
Tans, S.J.4
-
28
-
-
33749051432
-
Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation
-
Rokyta D.R., Beisel C.J., Joyce P. Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation. J. Theor. Biol. 2006, 243:114.
-
(2006)
J. Theor. Biol.
, vol.243
, pp. 114
-
-
Rokyta, D.R.1
Beisel, C.J.2
Joyce, P.3
-
30
-
-
13244272617
-
Relating HIV-1 sequence variation to replication capacity via trees and forests
-
Segal M.R., Barbour J.D., Grant R.M. Relating HIV-1 sequence variation to replication capacity via trees and forests. Stat. Appl. Genet. Mol. Biol. 2004, 3:2.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
, pp. 2
-
-
Segal, M.R.1
Barbour, J.D.2
Grant, R.M.3
-
32
-
-
21044435697
-
Sign epistasis and genetic constraint on evolutionary trajectories
-
Weinreich D.M., Watson R.A., Chao L. Sign epistasis and genetic constraint on evolutionary trajectories. Evolution 2005, 59:1165-1174.
-
(2005)
Evolution
, vol.59
, pp. 1165-1174
-
-
Weinreich, D.M.1
Watson, R.A.2
Chao, L.3
-
33
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright S. Evolution in Mendelian populations. Genetics 1931, 16:97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
|