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Volumn 13, Issue 1, 2012, Pages

Sequencing of the core MHC region of black grouse (Tetrao tetrix) and comparative genomics of the galliform MHC

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BF GENE; BLB GENE; CHROMOSOME INVERSION; CLADISTICS; COMPARATIVE GENOMICS; GALLIFORMES; GENE DUPLICATION; GENE IDENTIFICATION; GENE LOCUS; GENE REARRANGEMENT; GENOME ANALYSIS; GENOMICS; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ANALYSIS; SYNTENY; TAP1 GENE; TAP2 GENE; TAPBP GENE; TETRAO TETRIX;

EID: 84867363902     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-553     Document Type: Article
Times cited : (30)

References (62)
  • 1
    • 0032426345 scopus 로고    scopus 로고
    • Natural selection at major histocompatibility complex loci of vertebrates
    • 10.1146/annurev.genet.32.1.415, 9928486
    • Hughes AL, Yeager M. Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet 1998, 32:415-435. 10.1146/annurev.genet.32.1.415, 9928486.
    • (1998) Annu Rev Genet , vol.32 , pp. 415-435
    • Hughes, A.L.1    Yeager, M.2
  • 2
    • 0022962920 scopus 로고
    • Evolution of the major histocompatibility complex
    • Klein J, Figueroa F. Evolution of the major histocompatibility complex. CRC Crit Rev Immunol 1986, 6(4):295-386.
    • (1986) CRC Crit Rev Immunol , vol.6 , Issue.4 , pp. 295-386
    • Klein, J.1    Figueroa, F.2
  • 4
    • 12944320844 scopus 로고    scopus 로고
    • Comparative genomics of major histocompatibility complexes
    • 10.1007/s00251-004-0717-7, 15605248
    • Kelley J, Walter L, Trowsdale J. Comparative genomics of major histocompatibility complexes. Immunogenetics 2005, 56(10):683-695. 10.1007/s00251-004-0717-7, 15605248.
    • (2005) Immunogenetics , vol.56 , Issue.10 , pp. 683-695
    • Kelley, J.1    Walter, L.2    Trowsdale, J.3
  • 5
    • 0028988470 scopus 로고
    • Both man and bird and beast - comparative organization of Mhc genes
    • 10.1007/BF00188427, 7806269
    • Trowsdale J. Both man and bird and beast - comparative organization of Mhc genes. Immunogenetics 1995, 41(1):1-17. 10.1007/BF00188427, 7806269.
    • (1995) Immunogenetics , vol.41 , Issue.1 , pp. 1-17
    • Trowsdale, J.1
  • 6
    • 0036955166 scopus 로고    scopus 로고
    • Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man
    • 10.1034/j.1600-065X.2002.19008.x, 12493009
    • Kulski JK, Shiina T, Anzai T, Kohara S, Inoko H. Comparative genomic analysis of the MHC: the evolution of class I duplication blocks, diversity and complexity from shark to man. Immunol Rev 2002, 190(1):95-122. 10.1034/j.1600-065X.2002.19008.x, 12493009.
    • (2002) Immunol Rev , vol.190 , Issue.1 , pp. 95-122
    • Kulski, J.K.1    Shiina, T.2    Anzai, T.3    Kohara, S.4    Inoko, H.5
  • 7
    • 69249222669 scopus 로고    scopus 로고
    • Architecture and organization of chicken microchromosome 16: order of the NOR, MHC-Y, and MHC-B subregions
    • 10.1093/jhered/esp044, 19617522
    • Delany ME, Robinson CM, Goto RM, Miller MM. Architecture and organization of chicken microchromosome 16: order of the NOR, MHC-Y, and MHC-B subregions. J Hered 2009, 100(5):507-514. 10.1093/jhered/esp044, 19617522.
    • (2009) J Hered , vol.100 , Issue.5 , pp. 507-514
    • Delany, M.E.1    Robinson, C.M.2    Goto, R.M.3    Miller, M.M.4
  • 9
    • 0030452380 scopus 로고    scopus 로고
    • Mapping of the genetically independent chicken major histocompatibility complexes B-@ and RFP-Y-@ to the same microchromosome by two-color fluorescent in situ hybridization
    • 10.1159/000134445, 8995478
    • Fillon V, Zoorob R, Yerle M, Auffray C, Vignal A. Mapping of the genetically independent chicken major histocompatibility complexes B-@ and RFP-Y-@ to the same microchromosome by two-color fluorescent in situ hybridization. Cytogenet Cell Genet 1996, 75(1):7-9. 10.1159/000134445, 8995478.
    • (1996) Cytogenet Cell Genet , vol.75 , Issue.1 , pp. 7-9
    • Fillon, V.1    Zoorob, R.2    Yerle, M.3    Auffray, C.4    Vignal, A.5
  • 10
    • 0028347189 scopus 로고
    • 2 Mhc class-I and 2 Mhc class-Ii genes map to the chicken Rfp-Y system outside the B-complex
    • 10.1073/pnas.91.10.4397, 43792, 7910407
    • Miller MM, Golo R, Bernot A, Zoorob R, Auffray C, Bumstead N, Briles WE. 2 Mhc class-I and 2 Mhc class-Ii genes map to the chicken Rfp-Y system outside the B-complex. Proc Natl Acad Sci USA 1994, 91(10):4397-4401. 10.1073/pnas.91.10.4397, 43792, 7910407.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.10 , pp. 4397-4401
    • Miller, M.M.1    Golo, R.2    Bernot, A.3    Zoorob, R.4    Auffray, C.5    Bumstead, N.6    Briles, W.E.7
  • 11
    • 0027418794 scopus 로고
    • A polymorphic system related to but genetically independent of the chicken major histocompatibility complex
    • Briles WE, Goto RM, Auffray C, Miller MM. A polymorphic system related to but genetically independent of the chicken major histocompatibility complex. Immunogenetics 1993, 37(6):408-414.
    • (1993) Immunogenetics , vol.37 , Issue.6 , pp. 408-414
    • Briles, W.E.1    Goto, R.M.2    Auffray, C.3    Miller, M.M.4
  • 12
    • 0029810332 scopus 로고    scopus 로고
    • Association between the Rfp-Y haplotype and the incidence of Marek's disease in chickens
    • 10.1007/BF02602552, 8753853
    • Wakenell PS, Miller MM, Goto RM, Gauderman WJ, Briles WE. Association between the Rfp-Y haplotype and the incidence of Marek's disease in chickens. Immunogenetics 1996, 44(4):242-245. 10.1007/BF02602552, 8753853.
    • (1996) Immunogenetics , vol.44 , Issue.4 , pp. 242-245
    • Wakenell, P.S.1    Miller, M.M.2    Goto, R.M.3    Gauderman, W.J.4    Briles, W.E.5
  • 13
    • 0037793273 scopus 로고    scopus 로고
    • Analysis of part of the chicken Rfp-Y region reveals two novel lectin genes, the first complete genomic sequence of a class I alpha-chain gene, a truncated class II beta-chain gene, and a large CR1 repeat
    • Rogers S, Shaw I, Ross N, Nair V, Rothwell L, Kaufman J, Kaiser P. Analysis of part of the chicken Rfp-Y region reveals two novel lectin genes, the first complete genomic sequence of a class I alpha-chain gene, a truncated class II beta-chain gene, and a large CR1 repeat. Immunogenetics 2003, 55(2):100-108.
    • (2003) Immunogenetics , vol.55 , Issue.2 , pp. 100-108
    • Rogers, S.1    Shaw, I.2    Ross, N.3    Nair, V.4    Rothwell, L.5    Kaufman, J.6    Kaiser, P.7
  • 14
    • 0028987604 scopus 로고
    • A " minimal essential Mhc" and an " unrecognized Mhc" : two extremes in selection for polymorphism
    • 10.1111/j.1600-065X.1995.tb00670.x, 7558083
    • Kaufman J, Volk H, Wallny HJ. A " minimal essential Mhc" and an " unrecognized Mhc" : two extremes in selection for polymorphism. Immunol Rev 1995, 143:63-88. 10.1111/j.1600-065X.1995.tb00670.x, 7558083.
    • (1995) Immunol Rev , vol.143 , pp. 63-88
    • Kaufman, J.1    Volk, H.2    Wallny, H.J.3
  • 15
    • 0033613425 scopus 로고    scopus 로고
    • The chicken B locus is a minimal essential major histocompatibility complex
    • 10.1038/44856, 10553909
    • Kaufman J, Milne S, Gobel TWF, Walker BA, Jacob JP, Auffray C, Zoorob R, Beck S. The chicken B locus is a minimal essential major histocompatibility complex. Nature 1999, 401(6756):923-925. 10.1038/44856, 10553909.
    • (1999) Nature , vol.401 , Issue.6756 , pp. 923-925
    • Kaufman, J.1    Milne, S.2    Gobel, T.W.F.3    Walker, B.A.4    Jacob, J.P.5    Auffray, C.6    Zoorob, R.7    Beck, S.8
  • 16
    • 34249810357 scopus 로고    scopus 로고
    • Extended gene map reveals tripartite motif, C-type lectin, and Ig superfamily type genes within a subregion of the chicken MHC-B affecting infectious disease
    • Shiina T, Briles WE, Goto RM, Hosomichi K, Yanagiya K, Shimizu S, Inoko H, Miller MM. Extended gene map reveals tripartite motif, C-type lectin, and Ig superfamily type genes within a subregion of the chicken MHC-B affecting infectious disease. J Immunol 2007, 178(11):7162-7172.
    • (2007) J Immunol , vol.178 , Issue.11 , pp. 7162-7172
    • Shiina, T.1    Briles, W.E.2    Goto, R.M.3    Hosomichi, K.4    Yanagiya, K.5    Shimizu, S.6    Inoko, H.7    Miller, M.M.8
  • 17
    • 27744489155 scopus 로고    scopus 로고
    • The MHC of the duck (Anas platyrhynchos) contains five differentially expressed class I genes
    • Moon DA, Veniamin SM, Parks-Dely JA, Magor KE. The MHC of the duck (Anas platyrhynchos) contains five differentially expressed class I genes. J Immunol 2005, 175(10):6702-6712.
    • (2005) J Immunol , vol.175 , Issue.10 , pp. 6702-6712
    • Moon, D.A.1    Veniamin, S.M.2    Parks-Dely, J.A.3    Magor, K.E.4
  • 18
    • 0033851037 scopus 로고    scopus 로고
    • A 39-kb sequence around a blackbird Mhc class II gene: Ghost of selection past and songbird genome architecture
    • 10.1093/oxfordjournals.molbev.a026421, 10958854
    • Edwards SV, Gasper J, Garrigan D, Martindale D, Koop BF. A 39-kb sequence around a blackbird Mhc class II gene: Ghost of selection past and songbird genome architecture. Mol Biol Evol 2000, 17(9):1384-1395. 10.1093/oxfordjournals.molbev.a026421, 10958854.
    • (2000) Mol Biol Evol , vol.17 , Issue.9 , pp. 1384-1395
    • Edwards, S.V.1    Gasper, J.2    Garrigan, D.3    Martindale, D.4    Koop, B.F.5
  • 19
    • 0034126368 scopus 로고    scopus 로고
    • MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus)
    • 10.1101/gr.10.5.613, 310861, 10810083
    • Hess CM, Gasper J, Hoekstra HE, Hill CE, Edwards SV. MHC class II pseudogene and genomic signature of a 32-kb cosmid in the house finch (Carpodacus mexicanus). Genome Res 2000, 10(5):613-623. 10.1101/gr.10.5.613, 310861, 10810083.
    • (2000) Genome Res , vol.10 , Issue.5 , pp. 613-623
    • Hess, C.M.1    Gasper, J.2    Hoekstra, H.E.3    Hill, C.E.4    Edwards, S.V.5
  • 21
    • 79961029463 scopus 로고    scopus 로고
    • Genetic mapping of the major histocompatibility complex in the zebra finch (Taeniopygia guttata)
    • 10.1007/s00251-011-0525-9, 21494955
    • Ekblom R, Stapley J, Ball AD, Birkhead T, Burke T, Slate J. Genetic mapping of the major histocompatibility complex in the zebra finch (Taeniopygia guttata). Immunogenetics 2011, 63(8):523-530. 10.1007/s00251-011-0525-9, 21494955.
    • (2011) Immunogenetics , vol.63 , Issue.8 , pp. 523-530
    • Ekblom, R.1    Stapley, J.2    Ball, A.D.3    Birkhead, T.4    Burke, T.5    Slate, J.6
  • 22
    • 77952953983 scopus 로고    scopus 로고
    • Defining the turkey MHC: sequence and genes of the B locus
    • 10.4049/jimmunol.0901310, 19864609
    • Chaves LD, Krueth SB, Reed KM. Defining the turkey MHC: sequence and genes of the B locus. J Immunol 2009, 183(10):6530-6537. 10.4049/jimmunol.0901310, 19864609.
    • (2009) J Immunol , vol.183 , Issue.10 , pp. 6530-6537
    • Chaves, L.D.1    Krueth, S.B.2    Reed, K.M.3
  • 24
    • 33846581044 scopus 로고    scopus 로고
    • The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken
    • 10.1186/1471-2164-7-322, 1769493, 17184537
    • Hosomichi K, Shiina T, Suzuki S, Tanaka M, Shimizu S, Iwamoto S, Hara H, Yoshida Y, Kulski J, Inoko H, et al. The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken. BMC Genomics 2006, 7(1):322. 10.1186/1471-2164-7-322, 1769493, 17184537.
    • (2006) BMC Genomics , vol.7 , Issue.1 , pp. 322
    • Hosomichi, K.1    Shiina, T.2    Suzuki, S.3    Tanaka, M.4    Shimizu, S.5    Iwamoto, S.6    Hara, H.7    Yoshida, Y.8    Kulski, J.9    Inoko, H.10
  • 25
    • 84863266652 scopus 로고    scopus 로고
    • Isolation of a 97-kb minimal essential MHC B locus from a new reverse-4D BAC library of the golden pheasant
    • 10.1371/journal.pone.0032154, 3293878, 22403630
    • Ye Q, He K, Wu SY, Wan QH. Isolation of a 97-kb minimal essential MHC B locus from a new reverse-4D BAC library of the golden pheasant. PLoS One 2012, 7(3):e32154. 10.1371/journal.pone.0032154, 3293878, 22403630.
    • (2012) PLoS One , vol.7 , Issue.3
    • Ye, Q.1    He, K.2    Wu, S.Y.3    Wan, Q.H.4
  • 26
    • 0025956491 scopus 로고
    • Lekking in the black grouse - a test of male viability
    • Alatalo RV, Hoglund J, Lundberg A. Lekking in the black grouse - a test of male viability. Nature 1991, 352(6331):155-156.
    • (1991) Nature , vol.352 , Issue.6331 , pp. 155-156
    • Alatalo, R.V.1    Hoglund, J.2    Lundberg, A.3
  • 27
    • 0004236260 scopus 로고
    • Princeton: Princeton University Press
    • Höglund J, Alatalo RV. Leks 1995, Princeton: Princeton University Press.
    • (1995) Leks
    • Höglund, J.1    Alatalo, R.V.2
  • 29
    • 34548699489 scopus 로고    scopus 로고
    • The Mhc class II of the black grouse (tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression
    • 10.1007/s00251-007-0234-6, 17653538
    • Strand T, Westerdahl H, Hoeglund J, Alatalo RV, Siitari H. The Mhc class II of the black grouse (tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression. Immunogenetics 2007, 59(9):725-734. 10.1007/s00251-007-0234-6, 17653538.
    • (2007) Immunogenetics , vol.59 , Issue.9 , pp. 725-734
    • Strand, T.1    Westerdahl, H.2    Hoeglund, J.3    Alatalo, R.V.4    Siitari, H.5
  • 30
    • 79958262273 scopus 로고    scopus 로고
    • Genotyping of black grouse MHC class II B using reference strand-mediated conformational analysis (RSCA)
    • 10.1186/1756-0500-4-183, 3141517, 21672220
    • Strand T, Hoglund J. Genotyping of black grouse MHC class II B using reference strand-mediated conformational analysis (RSCA). BMC Res Notes 2011, 4(1):183. 10.1186/1756-0500-4-183, 3141517, 21672220.
    • (2011) BMC Res Notes , vol.4 , Issue.1 , pp. 183
    • Strand, T.1    Hoglund, J.2
  • 31
    • 84859031464 scopus 로고    scopus 로고
    • Can balancing selection on MHC loci counteract genetic drift in small fragmented populations of black grouse?
    • 10.1002/ece3.86, 3298947, 22423328
    • Strand TM, Segelbacher G, Quintela M, Xiao L, Axelsson T, Höglund J. Can balancing selection on MHC loci counteract genetic drift in small fragmented populations of black grouse?. Ecology and Evolution 2012, 2(2):341-353. 10.1002/ece3.86, 3298947, 22423328.
    • (2012) Ecology and Evolution , vol.2 , Issue.2 , pp. 341-353
    • Strand, T.M.1    Segelbacher, G.2    Quintela, M.3    Xiao, L.4    Axelsson, T.5    Höglund, J.6
  • 32
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • 10.1038/nrg2484, 2949280, 19015660
    • Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10(1):57-63. 10.1038/nrg2484, 2949280, 19015660.
    • (2009) Nat Rev Genet , vol.10 , Issue.1 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 33
    • 0042329754 scopus 로고    scopus 로고
    • Structure, function and evolution of CpG island promoters
    • 10.1007/s00018-003-3088-6, 14504655
    • Antequera F. Structure, function and evolution of CpG island promoters. Cell Mol Life Sci 2003, 60(8):1647-1658. 10.1007/s00018-003-3088-6, 14504655.
    • (2003) Cell Mol Life Sci , vol.60 , Issue.8 , pp. 1647-1658
    • Antequera, F.1
  • 34
    • 77950535845 scopus 로고    scopus 로고
    • Digital gene expression analysis of the zebra finch genome
    • 10.1186/1471-2164-11-219, 2996964, 20359325
    • Ekblom R, Balakrishnan C, Burke T, Slate J. Digital gene expression analysis of the zebra finch genome. BMC Genomics 2010, 11(1):219. 10.1186/1471-2164-11-219, 2996964, 20359325.
    • (2010) BMC Genomics , vol.11 , Issue.1 , pp. 219
    • Ekblom, R.1    Balakrishnan, C.2    Burke, T.3    Slate, J.4
  • 35
    • 33845472296 scopus 로고    scopus 로고
    • Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data
    • Crowe TM, Bowie RCK, Bloomer P, Mandiwana TG, Hedderson TAJ, Randi E, Pereira SL, Wakeling J. Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves: Galliformes): effects of character exclusion, data partitioning and missing data. Cladistics 2006, 22(6):495-532.
    • (2006) Cladistics , vol.22 , Issue.6 , pp. 495-532
    • Crowe, T.M.1    Bowie, R.C.K.2    Bloomer, P.3    Mandiwana, T.G.4    Hedderson, T.A.J.5    Randi, E.6    Pereira, S.L.7    Wakeling, J.8
  • 37
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection
    • 10.1073/pnas.86.3.958, 286598, 2492668
    • Hughes AL, Nei M. Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci USA 1989, 86(3):958-962. 10.1073/pnas.86.3.958, 286598, 2492668.
    • (1989) Proc Natl Acad Sci USA , vol.86 , Issue.3 , pp. 958-962
    • Hughes, A.L.1    Nei, M.2
  • 39
    • 37549017677 scopus 로고    scopus 로고
    • Closing gaps in the human genome with fosmid resources generated from multiple individuals
    • 10.1038/ng.2007.34, 18157130
    • Bovee D, Zhou Y, Haugen E, Wu Z, Hayden HS, Gillett W, Tuzun E, Cooper GM, Sampas N, Phelps K, et al. Closing gaps in the human genome with fosmid resources generated from multiple individuals. Nat Genet 2008, 40(1):96-101. 10.1038/ng.2007.34, 18157130.
    • (2008) Nat Genet , vol.40 , Issue.1 , pp. 96-101
    • Bovee, D.1    Zhou, Y.2    Haugen, E.3    Wu, Z.4    Hayden, H.S.5    Gillett, W.6    Tuzun, E.7    Cooper, G.M.8    Sampas, N.9    Phelps, K.10
  • 41
    • 10944226351 scopus 로고    scopus 로고
    • Metagenomics: genomic analysis of microbial communities
    • 10.1146/annurev.genet.38.072902.091216, 15568985
    • Riesenfeld CS, Schloss PD, Handelsman J. Metagenomics: genomic analysis of microbial communities. Annu Rev Genet 2004, 38:525-552. 10.1146/annurev.genet.38.072902.091216, 15568985.
    • (2004) Annu Rev Genet , vol.38 , pp. 525-552
    • Riesenfeld, C.S.1    Schloss, P.D.2    Handelsman, J.3
  • 42
    • 33751017957 scopus 로고    scopus 로고
    • Sequencing medicago truncatula expressed sequenced tags using 454 life sciences technology
    • 10.1186/1471-2164-7-272, 1635983, 17062153
    • Cheung F, Haas B, Goldberg S, May G, Xiao Y, Town C. Sequencing medicago truncatula expressed sequenced tags using 454 life sciences technology. BMC Genomics 2006, 7(1):272. 10.1186/1471-2164-7-272, 1635983, 17062153.
    • (2006) BMC Genomics , vol.7 , Issue.1 , pp. 272
    • Cheung, F.1    Haas, B.2    Goldberg, S.3    May, G.4    Xiao, Y.5    Town, C.6
  • 43
    • 33845984917 scopus 로고    scopus 로고
    • Gene discovery and annotation using LCM-454 transcriptome sequencing
    • 1716268, 17095711
    • Emrich SJ, Barbazuk WB, Li L, Schnable PS. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res 2007, 17(1):69-73. 1716268, 17095711.
    • (2007) Genome Res , vol.17 , Issue.1 , pp. 69-73
    • Emrich, S.J.1    Barbazuk, W.B.2    Li, L.3    Schnable, P.S.4
  • 44
    • 41149167170 scopus 로고    scopus 로고
    • Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
    • 10.1111/j.1365-294X.2008.03666.x, 18266620
    • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Mol Ecol 2008, 17(7):1636-1647. 10.1111/j.1365-294X.2008.03666.x, 18266620.
    • (2008) Mol Ecol , vol.17 , Issue.7 , pp. 1636-1647
    • Vera, J.C.1    Wheat, C.W.2    Fescemyer, H.W.3    Frilander, M.J.4    Crawford, D.L.5    Hanski, I.6    Marden, J.H.7
  • 45
    • 0017148259 scopus 로고
    • A general method for isolation of high molecular weight DNA from eukaryotes
    • 343085, 987581
    • Blin N, Stafford DW. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res 1976, 3(9):2303-2308. 343085, 987581.
    • (1976) Nucleic Acids Res , vol.3 , Issue.9 , pp. 2303-2308
    • Blin, N.1    Stafford, D.W.2
  • 46
    • 0141922873 scopus 로고    scopus 로고
    • Construction of a gorilla fosmid library and its PCR screening system
    • 10.1016/S0888-7543(03)00174-5, 14559214
    • Kim CG, Fujiyama A, Saitou N. Construction of a gorilla fosmid library and its PCR screening system. Genomics 2003, 82(5):571-574. 10.1016/S0888-7543(03)00174-5, 14559214.
    • (2003) Genomics , vol.82 , Issue.5 , pp. 571-574
    • Kim, C.G.1    Fujiyama, A.2    Saitou, N.3
  • 47
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10.1101/gr.9.9.868, 310812, 10508846
    • Huang XQ, Madan A. CAP3: A DNA sequence assembly program. Genome Res 1999, 9(9):868-877. 10.1101/gr.9.9.868, 310812, 10508846.
    • (1999) Genome Res , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.Q.1    Madan, A.2
  • 48
    • 0027968068 scopus 로고
    • Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 10.1093/nar/22.22.4673, 308517, 7984417
    • Thompson JD, Higgins DG, Gibson TJ. Clustal-W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22(22):4673-4680. 10.1093/nar/22.22.4673, 308517, 7984417.
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 0031669184 scopus 로고    scopus 로고
    • Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
    • 310751, 9685323
    • Taillon-Miller P, Gu ZJ, Li Q, Hillier L, Kwok PY. Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms. Genome Res 1998, 8(7):748-754. 310751, 9685323.
    • (1998) Genome Res , vol.8 , Issue.7 , pp. 748-754
    • Taillon-Miller, P.1    Gu, Z.J.2    Li, Q.3    Hillier, L.4    Kwok, P.Y.5
  • 51
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • 10.1006/jmbi.1997.0951, 9149143
    • Burge C, Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol 1997, 268(1):78-94. 10.1006/jmbi.1997.0951, 9149143.
    • (1997) J Mol Biol , vol.268 , Issue.1 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 52
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • 10.1101/gr.10.4.516, 310882, 10779491
    • Salamov AA, Solovyev VV. Ab initio gene finding in Drosophila genomic DNA. Genome Res 2000, 10(4):516-522. 10.1101/gr.10.4.516, 310882, 10779491.
    • (2000) Genome Res , vol.10 , Issue.4 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 53
    • 0000241874 scopus 로고
    • Genmark - parallel gene recognition for both DNA strands
    • Borodovsky M, Mcininch J. Genmark - parallel gene recognition for both DNA strands. Comput Chem 1993, 17(2):123-133.
    • (1993) Comput Chem , vol.17 , Issue.2 , pp. 123-133
    • Borodovsky, M.1    Mcininch, J.2
  • 54
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • 146525, 9023104
    • Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25(5):955-964. 146525, 9023104.
    • (1997) Nucleic Acids Res , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 55
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • 10.1016/S0168-9525(00)02024-2, 10827456
    • Rice P, Longden I, Bleasby A. EMBOSS: The European molecular biology open software suite. Trends Genet 2000, 16(6):276-277. 10.1016/S0168-9525(00)02024-2, 10827456.
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 56
    • 84864185743 scopus 로고    scopus 로고
    • Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development
    • 10.1098/rsob.120054, 3376728, 22724064
    • Wang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, Hoglund J. Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development. Open Biol 2012, 2(4):120054. 10.1098/rsob.120054, 3376728, 22724064.
    • (2012) Open Biol , vol.2 , Issue.4 , pp. 120054
    • Wang, B.1    Ekblom, R.2    Castoe, T.A.3    Jones, E.P.4    Kozma, R.5    Bongcam-Rudloff, E.6    Pollock, D.D.7    Hoglund, J.8
  • 58
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: multiple alignment of conserved genomic sequence with rearrangements
    • 10.1101/gr.2289704, 442156, 15231754
    • Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004, 14(7):1394-1403. 10.1101/gr.2289704, 442156, 15231754.
    • (2004) Genome Res , vol.14 , Issue.7 , pp. 1394-1403
    • Darling, A.C.1    Mau, B.2    Blattner, F.R.3    Perna, N.T.4
  • 59
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • 10.1093/bioinformatics/14.9.817, 9918953
    • Posada D, Crandall KA. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14(9):817-818. 10.1093/bioinformatics/14.9.817, 9918953.
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 60
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121, 3203626, 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28(10):2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
    • (2011) Mol Biol Evol , vol.28 , Issue.10 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 61
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 1986, 3(5):418-426.
    • (1986) Mol Biol Evol , vol.3 , Issue.5 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 62
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • 10.1093/molbev/msm088, 17483113
    • Yang ZH. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
    • (2007) Mol Biol Evol , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.