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Volumn 7, Issue 10, 2012, Pages

Inducible Control of Subcellular RNA Localization Using a Synthetic Protein-RNA Aptamer Interaction

Author keywords

[No Author keywords available]

Indexed keywords

APTAMER; DOXYCYCLINE; HYBRID PROTEIN; REPRESSOR PROTEIN; TET REPRESSOR PROTEIN; UNCLASSIFIED DRUG;

EID: 84867311063     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0046868     Document Type: Article
Times cited : (7)

References (47)
  • 1
    • 13544261683 scopus 로고    scopus 로고
    • RNA localization in yeast: moving towards a mechanism
    • Gonsalvez GB, Urbinati CR, Long RM, (2005) RNA localization in yeast: moving towards a mechanism. Biol Cell 97: 75-86.
    • (2005) Biol Cell , vol.97 , pp. 75-86
    • Gonsalvez, G.B.1    Urbinati, C.R.2    Long, R.M.3
  • 2
    • 0042968976 scopus 로고    scopus 로고
    • The power of the 3′ UTR: translational control and development
    • Kuersten S, Goodwin EB, (2003) The power of the 3′ UTR: translational control and development. Nat Rev Genet 4: 626-637.
    • (2003) Nat Rev Genet , vol.4 , pp. 626-637
    • Kuersten, S.1    Goodwin, E.B.2
  • 3
    • 60149086205 scopus 로고    scopus 로고
    • mRNA localization: gene expression in the spatial dimension
    • Martin KC, Ephrussi A, (2009) mRNA localization: gene expression in the spatial dimension. Cell 136: 719-730.
    • (2009) Cell , vol.136 , pp. 719-730
    • Martin, K.C.1    Ephrussi, A.2
  • 4
    • 38049040391 scopus 로고    scopus 로고
    • Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules
    • Blower MD, Feric E, Weis K, Heald R, (2007) Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules. J Cell Biol 179: 1365-1373.
    • (2007) J Cell Biol , vol.179 , pp. 1365-1373
    • Blower, M.D.1    Feric, E.2    Weis, K.3    Heald, R.4
  • 5
    • 34848918150 scopus 로고    scopus 로고
    • Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
    • Lécuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, et al. (2007) Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 131: 174-187.
    • (2007) Cell , vol.131 , pp. 174-187
    • Lécuyer, E.1    Yoshida, H.2    Parthasarathy, N.3    Alm, C.4    Babak, T.5
  • 6
    • 43049100759 scopus 로고    scopus 로고
    • Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions
    • Mili S, Moissoglu K, Macara IG, (2008) Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions. Nature 453: 115-119.
    • (2008) Nature , vol.453 , pp. 115-119
    • Mili, S.1    Moissoglu, K.2    Macara, I.G.3
  • 7
    • 0141482078 scopus 로고    scopus 로고
    • Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis
    • Shepard KA, Gerber AP, Jambhekar A, Takizawa PA, Brown PO, et al. (2003) Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis. Proc Natl Acad Sci USA 100: 11429-11434.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11429-11434
    • Shepard, K.A.1    Gerber, A.P.2    Jambhekar, A.3    Takizawa, P.A.4    Brown, P.O.5
  • 8
    • 0035674402 scopus 로고    scopus 로고
    • Translational regulation and RNA localization in Drosophila oocytes and embryos
    • Johnstone O, Lasko P, (2001) Translational regulation and RNA localization in Drosophila oocytes and embryos. Annu Rev Genet 35: 365-406.
    • (2001) Annu Rev Genet , vol.35 , pp. 365-406
    • Johnstone, O.1    Lasko, P.2
  • 9
    • 13544277618 scopus 로고    scopus 로고
    • Putting RNAs in the right place at the right time: RNA localization in the frog oocyte
    • King ML, Messitt TJ, Mowry KL, (2005) Putting RNAs in the right place at the right time: RNA localization in the frog oocyte. Biol Cell 97: 19-33.
    • (2005) Biol Cell , vol.97 , pp. 19-33
    • King, M.L.1    Messitt, T.J.2    Mowry, K.L.3
  • 10
    • 33746875960 scopus 로고    scopus 로고
    • Regulation of sexual development of Plasmodium by translational repression
    • Mair GR, Braks JAM, Garver LS, Wiegant JCAG, Hall N, et al. (2006) Regulation of sexual development of Plasmodium by translational repression. Science 313: 667-669.
    • (2006) Science , vol.313 , pp. 667-669
    • Mair, G.R.1    Braks, J.A.M.2    Garver, L.S.3    Wiegant, J.C.A.G.4    Hall, N.5
  • 11
    • 28544443162 scopus 로고    scopus 로고
    • Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1
    • Hüttelmaier S, Zenklusen D, Lederer M, Dictenberg J, Lorenz M, et al. (2005) Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1. Nature 438: 512-515.
    • (2005) Nature , vol.438 , pp. 512-515
    • Hüttelmaier, S.1    Zenklusen, D.2    Lederer, M.3    Dictenberg, J.4    Lorenz, M.5
  • 12
    • 34250313519 scopus 로고    scopus 로고
    • Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p
    • Paquin N, Ménade M, Poirier G, Donato D, Drouet E, et al. (2007) Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p. Mol Cell 26: 795-809.
    • (2007) Mol Cell , vol.26 , pp. 795-809
    • Paquin, N.1    Ménade, M.2    Poirier, G.3    Donato, D.4    Drouet, E.5
  • 13
    • 0025885105 scopus 로고
    • Staufen, a gene required to localize maternal RNAs in the Drosophila egg
    • St Johnston D, Beuchle D, Nüsslein-Volhard C, (1991) Staufen, a gene required to localize maternal RNAs in the Drosophila egg. Cell 66: 51-63.
    • (1991) Cell , vol.66 , pp. 51-63
    • St Johnston, D.1    Beuchle, D.2    Nüsslein-Volhard, C.3
  • 14
    • 0031772475 scopus 로고    scopus 로고
    • Regulation of mRNA localization by transmembrane signalling: local interaction of HB-GAM (heparin-binding growth-associated molecule) with the cell surface localizes beta-actin mRNA
    • Fages C, Kaksonen M, Kinnunen T, Punnonen EL, Rauvala H, (1998) Regulation of mRNA localization by transmembrane signalling: local interaction of HB-GAM (heparin-binding growth-associated molecule) with the cell surface localizes beta-actin mRNA. J Cell Sci 111 (Pt 20): 3073-3080.
    • (1998) J Cell Sci , vol.111 , Issue.Pt 20 , pp. 3073-3080
    • Fages, C.1    Kaksonen, M.2    Kinnunen, T.3    Punnonen, E.L.4    Rauvala, H.5
  • 16
    • 0033602387 scopus 로고    scopus 로고
    • Structural elements required for the localization of ASH1 mRNA and of a green fluorescent protein reporter particle in vivo
    • Chartrand P, Meng XH, Singer RH, Long RM, (1999) Structural elements required for the localization of ASH1 mRNA and of a green fluorescent protein reporter particle in vivo. Curr Biol 9: 333-336.
    • (1999) Curr Biol , vol.9 , pp. 333-336
    • Chartrand, P.1    Meng, X.H.2    Singer, R.H.3    Long, R.M.4
  • 17
    • 0027362779 scopus 로고
    • Isoform-specific 3′-untranslated sequences sort alpha-cardiac and beta-cytoplasmic actin messenger RNAs to different cytoplasmic compartments
    • Kislauskis EH, Li Z, Singer RH, Taneja KL, (1993) Isoform-specific 3′-untranslated sequences sort alpha-cardiac and beta-cytoplasmic actin messenger RNAs to different cytoplasmic compartments. J Cell Biol 123: 165-172.
    • (1993) J Cell Biol , vol.123 , pp. 165-172
    • Kislauskis, E.H.1    Li, Z.2    Singer, R.H.3    Taneja, K.L.4
  • 18
    • 0024380401 scopus 로고
    • The gradient morphogen bicoid is a concentration-dependent transcriptional activator
    • Struhl G, Struhl K, Macdonald PM, (1989) The gradient morphogen bicoid is a concentration-dependent transcriptional activator. Cell 57: 1259-1273.
    • (1989) Cell , vol.57 , pp. 1259-1273
    • Struhl, G.1    Struhl, K.2    Macdonald, P.M.3
  • 19
    • 0034406803 scopus 로고    scopus 로고
    • She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA
    • Long RM, Gu W, Lorimer E, Singer RH, Chartrand P, (2000) She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA. EMBO J 19: 6592-6601.
    • (2000) EMBO J , vol.19 , pp. 6592-6601
    • Long, R.M.1    Gu, W.2    Lorimer, E.3    Singer, R.H.4    Chartrand, P.5
  • 20
    • 0034847379 scopus 로고    scopus 로고
    • Two closely related human nuclear export factors utilize entirely distinct export pathways
    • Yang J, Bogerd HP, Wang PJ, Page DC, Cullen BR, (2001) Two closely related human nuclear export factors utilize entirely distinct export pathways. Mol Cell 8: 397-406.
    • (2001) Mol Cell , vol.8 , pp. 397-406
    • Yang, J.1    Bogerd, H.P.2    Wang, P.J.3    Page, D.C.4    Cullen, B.R.5
  • 21
    • 0034704201 scopus 로고    scopus 로고
    • Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
    • Lykke-Andersen J, Shu MD, Steitz JA, (2000) Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon. Cell 103: 1121-1131.
    • (2000) Cell , vol.103 , pp. 1121-1131
    • Lykke-Andersen, J.1    Shu, M.D.2    Steitz, J.A.3
  • 22
    • 33749077101 scopus 로고    scopus 로고
    • Dendritic protein synthesis, synaptic plasticity, and memory
    • Sutton MA, Schuman EM, (2006) Dendritic protein synthesis, synaptic plasticity, and memory. Cell 127: 49-58.
    • (2006) Cell , vol.127 , pp. 49-58
    • Sutton, M.A.1    Schuman, E.M.2
  • 23
    • 77952486777 scopus 로고    scopus 로고
    • Transmembrane receptor DCC associates with protein synthesis machinery and regulates translation
    • Tcherkezian J, Brittis PA, Thomas F, Roux PP, Flanagan JG, (2010) Transmembrane receptor DCC associates with protein synthesis machinery and regulates translation. Cell 141: 632-644.
    • (2010) Cell , vol.141 , pp. 632-644
    • Tcherkezian, J.1    Brittis, P.A.2    Thomas, F.3    Roux, P.P.4    Flanagan, J.G.5
  • 24
    • 77956926288 scopus 로고    scopus 로고
    • Engineering a direct and inducible protein-RNA interaction to regulate RNA biology
    • Belmont BJ, Niles JC, (2010) Engineering a direct and inducible protein-RNA interaction to regulate RNA biology. ACS Chem Biol 5: 851-861.
    • (2010) ACS Chem Biol , vol.5 , pp. 851-861
    • Belmont, B.J.1    Niles, J.C.2
  • 25
    • 84861401558 scopus 로고    scopus 로고
    • Direct and specific chemical control of eukaryotic translation with a synthetic RNA-protein interaction
    • Goldfless SJ, Belmont BJ, de Paz AM, Liu JF, Niles JC, (2012) Direct and specific chemical control of eukaryotic translation with a synthetic RNA-protein interaction. Nucleic Acids Res 40: e64.
    • (2012) Nucleic Acids Res , vol.40
    • Goldfless, S.J.1    Belmont, B.J.2    de Paz, A.M.3    Liu, J.F.4    Niles, J.C.5
  • 26
    • 0033519623 scopus 로고    scopus 로고
    • Localization and anchoring of mRNA in budding yeast
    • Beach DL, Salmon ED, Bloom K, (1999) Localization and anchoring of mRNA in budding yeast. Curr Biol 9: 569-578.
    • (1999) Curr Biol , vol.9 , pp. 569-578
    • Beach, D.L.1    Salmon, E.D.2    Bloom, K.3
  • 27
    • 39949084297 scopus 로고    scopus 로고
    • Local regulation of mRNA translation: new insights from the bud
    • Paquin N, Chartrand P, (2008) Local regulation of mRNA translation: new insights from the bud. Trends Cell Biol 18: 105-111.
    • (2008) Trends Cell Biol , vol.18 , pp. 105-111
    • Paquin, N.1    Chartrand, P.2
  • 28
    • 79955517599 scopus 로고    scopus 로고
    • A cytoplasmic complex mediates specific mRNA recognition and localization in yeast
    • Müller M, Heym RG, Mayer A, Kramer K, Schmid M, et al. (2011) A cytoplasmic complex mediates specific mRNA recognition and localization in yeast. PLoS Biol 9: e1000611.
    • (2011) PLoS Biol , vol.9
    • Müller, M.1    Heym, R.G.2    Mayer, A.3    Kramer, K.4    Schmid, M.5
  • 29
    • 67749099364 scopus 로고    scopus 로고
    • Essential features of the class V myosin from budding yeast for ASH1 mRNA transport
    • Bookwalter CS, Lord M, Trybus KM, (2009) Essential features of the class V myosin from budding yeast for ASH1 mRNA transport. Mol Biol Cell 20: 3414-3421.
    • (2009) Mol Biol Cell , vol.20 , pp. 3414-3421
    • Bookwalter, C.S.1    Lord, M.2    Trybus, K.M.3
  • 30
    • 0036138908 scopus 로고    scopus 로고
    • A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications
    • Nagai T, Ibata K, Park ES, Kubota M, Mikoshiba K, et al. (2002) A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat Biotechnol 20: 87-90.
    • (2002) Nat Biotechnol , vol.20 , pp. 87-90
    • Nagai, T.1    Ibata, K.2    Park, E.S.3    Kubota, M.4    Mikoshiba, K.5
  • 31
    • 65249131779 scopus 로고    scopus 로고
    • Nuclear shuttling of She2p couples ASH1 mRNA localization to its translational repression by recruiting Loc1p and Puf6p
    • Shen Z, Paquin N, Forget A, Chartrand P, (2009) Nuclear shuttling of She2p couples ASH1 mRNA localization to its translational repression by recruiting Loc1p and Puf6p. Mol Biol Cell 20: 2265-2275.
    • (2009) Mol Biol Cell , vol.20 , pp. 2265-2275
    • Shen, Z.1    Paquin, N.2    Forget, A.3    Chartrand, P.4
  • 32
    • 56749096054 scopus 로고    scopus 로고
    • Translational control of localized mRNAs: restricting protein synthesis in space and time
    • Besse F, Ephrussi A, (2008) Translational control of localized mRNAs: restricting protein synthesis in space and time. Nat Rev Mol Cell Biol 9: 971-980.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 971-980
    • Besse, F.1    Ephrussi, A.2
  • 33
    • 0035158326 scopus 로고    scopus 로고
    • ASH1 mRNA localization in three acts
    • Beach DL, Bloom K, (2001) ASH1 mRNA localization in three acts. Mol Biol Cell 12: 2567-2577.
    • (2001) Mol Biol Cell , vol.12 , pp. 2567-2577
    • Beach, D.L.1    Bloom, K.2
  • 34
    • 0028953840 scopus 로고
    • Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds
    • Mumberg D, Müller R, Funk M, (1995) Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156: 119-122.
    • (1995) Gene , vol.156 , pp. 119-122
    • Mumberg, D.1    Müller, R.2    Funk, M.3
  • 36
    • 35448990907 scopus 로고    scopus 로고
    • A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
    • Win MN, Smolke CD, (2007) A modular and extensible RNA-based gene-regulatory platform for engineering cellular function. Proc Natl Acad Sci USA 104: 14283-14288.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 14283-14288
    • Win, M.N.1    Smolke, C.D.2
  • 37
    • 0036928186 scopus 로고    scopus 로고
    • Asymmetric sorting of ash1p in yeast results from inhibition of translation by localization elements in the mRNA
    • Chartrand P, Meng XH, Huttelmaier S, Donato D, Singer RH, (2002) Asymmetric sorting of ash1p in yeast results from inhibition of translation by localization elements in the mRNA. Mol Cell 10: 1319-1330.
    • (2002) Mol Cell , vol.10 , pp. 1319-1330
    • Chartrand, P.1    Meng, X.H.2    Huttelmaier, S.3    Donato, D.4    Singer, R.H.5
  • 38
    • 2942692177 scopus 로고    scopus 로고
    • A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization
    • Gu W, Deng Y, Zenklusen D, Singer RH, (2004) A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes Dev 18: 1452-1465.
    • (2004) Genes Dev , vol.18 , pp. 1452-1465
    • Gu, W.1    Deng, Y.2    Zenklusen, D.3    Singer, R.H.4
  • 39
    • 0036352777 scopus 로고    scopus 로고
    • Tethered function assays using 3′ untranslated regions
    • Coller J, Wickens M, (2002) Tethered function assays using 3′ untranslated regions. Methods 26: 142-150.
    • (2002) Methods , vol.26 , pp. 142-150
    • Coller, J.1    Wickens, M.2
  • 41
    • 4644310115 scopus 로고    scopus 로고
    • Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis
    • Pillai RS, Artus CG, Filipowicz W, (2004) Tethering of human Ago proteins to mRNA mimics the miRNA-mediated repression of protein synthesis. RNA 10: 1518-1525.
    • (2004) RNA , vol.10 , pp. 1518-1525
    • Pillai, R.S.1    Artus, C.G.2    Filipowicz, W.3
  • 42
    • 47849121275 scopus 로고    scopus 로고
    • Simultaneous transport of different localized mRNA species revealed by live-cell imaging
    • Lange S, Katayama Y, Schmid M, Burkacky O, Bräuchle C, et al. (2008) Simultaneous transport of different localized mRNA species revealed by live-cell imaging. Traffic 9: 1256-1267.
    • (2008) Traffic , vol.9 , pp. 1256-1267
    • Lange, S.1    Katayama, Y.2    Schmid, M.3    Burkacky, O.4    Bräuchle, C.5
  • 43
    • 0035912793 scopus 로고    scopus 로고
    • Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome
    • Keene JD, (2001) Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. Proc Natl Acad Sci USA 98: 7018-7024.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7018-7024
    • Keene, J.D.1
  • 44
    • 54949148332 scopus 로고    scopus 로고
    • Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    • Hogan DJ, Riordan DP, Gerber AP, Herschlag D, Brown PO, (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol 6: e255.
    • (2008) PLoS Biol , vol.6
    • Hogan, D.J.1    Riordan, D.P.2    Gerber, A.P.3    Herschlag, D.4    Brown, P.O.5
  • 45
    • 0004136246 scopus 로고    scopus 로고
    • Cold Spring Harbor L., Joseph Sambrook, David W. Russell. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory
    • Sambrook J, Russell DW, Cold Spring Harbor L (2001) Molecular cloning: a laboratory manual/Joseph Sambrook, David W. Russell. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory.
    • (2001) Molecular cloning: A laboratory manual
    • Sambrook, J.1    Russell, D.W.2
  • 46
    • 33845792555 scopus 로고    scopus 로고
    • CellProfiler: image analysis software for identifying and quantifying cell phenotypes
    • Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, et al. (2006) CellProfiler: image analysis software for identifying and quantifying cell phenotypes. Genome Biol 7: R100.
    • (2006) Genome Biol , vol.7
    • Carpenter, A.E.1    Jones, T.R.2    Lamprecht, M.R.3    Clarke, C.4    Kang, I.H.5
  • 47
    • 79954500285 scopus 로고    scopus 로고
    • Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
    • Kamentsky L, Jones TR, Fraser A, Bray M-A, Logan DJ, et al. (2011) Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. Bioinformatics 27: 1179-1180.
    • (2011) Bioinformatics , vol.27 , pp. 1179-1180
    • Kamentsky, L.1    Jones, T.R.2    Fraser, A.3    Bray, M.-A.4    Logan, D.J.5


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