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Volumn 40, Issue 15, 2012, Pages 7066-7073

Context-dependent conservation of DNA methyltransferases in bacteria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; DNA; DNA METHYLTRANSFERASE; OLIGONUCLEOTIDE;

EID: 84867302465     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks390     Document Type: Article
Times cited : (51)

References (26)
  • 1
    • 0000851081 scopus 로고
    • Host specificity of DNA produced by Escherichia coli V. The role of methionine in the production of host specificity
    • Arber, W. (1965) Host specificity of DNA produced by Escherichia coli V. The role of methionine in the production of host specificity. J. Mol. Biol., 11, 247-256.
    • (1965) J. Mol. Biol. , vol.11 , pp. 247-256
    • Arber, W.1
  • 2
    • 0016285745 scopus 로고
    • Bacteriophage lambda having EcoRI endonuclease sites only in the nonessential region of the genome
    • Rambach, A. and Tiollais, P. (1974) Bacteriophage lambda having EcoRI endonuclease sites only in the nonessential region of the genome. Proc. Natl Acad. Sci. USA, 71, 3927-3930.
    • (1974) Proc. Natl Acad. Sci. USA , vol.71 , pp. 3927-3930
    • Rambach, A.1    Tiollais, P.2
  • 3
    • 0034828366 scopus 로고    scopus 로고
    • Evolutionary role of restriction/modification systems as revealed by comparative genome analysis
    • Rocha, E. P., Danchin, A. and Viari, A. (2001) Evolutionary role of restriction/modification systems as revealed by comparative genome analysis. Genome Res., 11, 946-958.
    • (2001) Genome Res. , vol.11 , pp. 946-958
    • Rocha, E.P.1    Danchin, A.2    Viari, A.3
  • 4
    • 0028901038 scopus 로고
    • Selfish behavior of restriction-modification systems
    • Naito, T., Kusano, K. and Kobayashi, I. (1995) Selfish behavior of restriction-modification systems. Science, 267, 897-899.
    • (1995) Science , vol.267 , pp. 897-899
    • Naito, T.1    Kusano, K.2    Kobayashi, I.3
  • 6
    • 0035883519 scopus 로고    scopus 로고
    • Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
    • Kobayashi, I. (2001) Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res., 29, 3742-3756.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 3742-3756
    • Kobayashi, I.1
  • 7
    • 0032728707 scopus 로고    scopus 로고
    • Post-segregational killing by restriction modification gene complexes: Observations of individual cell deaths
    • Handa, N. and Kobayashi, I. Post-segregational killing by restriction modification gene complexes: observations of individual cell deaths. Biochimie, 81, 931-938.
    • Biochimie , vol.81 , pp. 931-938
    • Handa, N.1    Kobayashi, I.2
  • 8
    • 0029940857 scopus 로고    scopus 로고
    • Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems
    • Jeltsch, A. and Pingoud, A. (1996) Horizontal gene transfer contributes to the wide distribution and evolution of type II restriction-modification systems. J. Mol. Evol., 42, 91-96.
    • (1996) J. Mol. Evol. , vol.42 , pp. 91-96
    • Jeltsch, A.1    Pingoud, A.2
  • 9
    • 0035150260 scopus 로고    scopus 로고
    • Evidence for horizontal transfer of SsuDAT1I restriction-modification genes to the Streptococcus suis genome
    • Sekizaki, T., Otani, Y., Osaki, M., Takamatsu, D. and Shimoji, Y. (2001) Evidence for horizontal transfer of SsuDAT1I restriction-modification genes to the Streptococcus suis genome. J. Bacteriol., 183, 500-511.
    • (2001) J. Bacteriol. , vol.183 , pp. 500-511
    • Sekizaki, T.1    Otani, Y.2    Osaki, M.3    Takamatsu, D.4    Shimoji, Y.5
  • 10
    • 0032703783 scopus 로고    scopus 로고
    • Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DNA
    • Kita, K., Tsuda, J., Kato, T., Okamoto, K., Yanase, H. and Tanaka, M. (1999) Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DNA. J. Bacteriol., 181, 6822-6827.
    • (1999) J. Bacteriol. , vol.181 , pp. 6822-6827
    • Kita, K.1    Tsuda, J.2    Kato, T.3    Okamoto, K.4    Yanase, H.5    Tanaka, M.6
  • 11
    • 33646008874 scopus 로고    scopus 로고
    • N6-methyl-adenine: An epigenetic signal for DNA-protein interactions
    • Wion, D. and Casadesús, J. (2006) N6-methyl-adenine: an epigenetic signal for DNA-protein interactions. Nat. Rev. Microbiol., 4, 183-192.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 183-192
    • Wion, D.1    Casadesús, J.2
  • 12
    • 0028272057 scopus 로고
    • The dam and dcm strains of Escherichia coli-a review
    • Palmer, B. R. and Marinus, M. G. (1994) The dam and dcm strains of Escherichia coli-a review. Gene, 143, 1-12.
    • (1994) Gene , vol.143 , pp. 1-12
    • Palmer, B.R.1    Marinus, M.G.2
  • 13
    • 0025081854 scopus 로고
    • The role of dam methyltransferase in the control of DNA replication in E
    • Boye, E. and Løbner-Olesen, A. (1990) The role of dam methyltransferase in the control of DNA replication in E. coli. Cell, 62, 981-989.
    • (1990) Coli. Cell , vol.62 , pp. 981-989
    • Boye, E.1    Løbner-Olesen, A.2
  • 14
    • 52049097777 scopus 로고    scopus 로고
    • Competitive Lrp and Dam assembly at the pap regulatory region: Implications for mechanisms of epigenetic regulation
    • Peterson, S. N. and Reich, N. O. (2008) Competitive Lrp and Dam assembly at the pap regulatory region: implications for mechanisms of epigenetic regulation. J. Mol. Biol., 383, 92-105.
    • (2008) J. Mol. Biol. , vol.383 , pp. 92-105
    • Peterson, S.N.1    Reich, N.O.2
  • 15
    • 0037119976 scopus 로고    scopus 로고
    • DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter
    • Reisenauer, A. and Shapiro, L. (2002) DNA methylation affects the cell cycle transcription of the CtrA global regulator in Caulobacter. EMBO J., 21, 4969-4977.
    • (2002) EMBO J. , vol.21 , pp. 4969-4977
    • Reisenauer, A.1    Shapiro, L.2
  • 16
    • 0036842035 scopus 로고    scopus 로고
    • A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex
    • Takahashi, N., Naito, Y., Handa, N. and Kobayashi, I. (2002) A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex. J. Bacteriol., 184, 6100-6108.
    • (2002) J. Bacteriol. , vol.184 , pp. 6100-6108
    • Takahashi, N.1    Naito, Y.2    Handa, N.3    Kobayashi, I.4
  • 17
    • 75549086595 scopus 로고    scopus 로고
    • REBASE-a database for DNA restriction and modification: Enzymes, genes and genomes
    • Roberts, R. J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 18
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa, M., Goto, S., Furumichi, M., Tanabe, M. and Hirakawa, M. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 38, D355-D360.
    • (2010) Nucleic Acids Res. , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 19
    • 79959931985 scopus 로고    scopus 로고
    • HMMER web server: Interactive sequence similarity searching
    • Finn, R. D., Clements, J. and Eddy, S. R. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res., 39, W29-W37.
    • (2011) Nucleic Acids Res. , vol.39
    • Finn, R.D.1    Clements, J.2    Eddy, S.R.3
  • 20
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S. B. and Wunsch, C. D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 21
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European molecular biology open software suite
    • Rice, P., Longden, I. and Bleasby, A. (2000) EMBOSS: the European molecular biology open software suite. Trends Genet. TIG, 16, 276-277.
    • (2000) Trends Genet. TIG , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 22
    • 33748689309 scopus 로고    scopus 로고
    • Interpolated variable order motifs for identification of horizontally acquired DNA: Revisiting the Salmonella pathogenicity islands
    • Vernikos, G. S. and Parkhill, J. (2006) Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinformatics, 22, 2196-2203.
    • (2006) Bioinformatics , vol.22 , pp. 2196-2203
    • Vernikos, G.S.1    Parkhill, J.2
  • 23
    • 0035956977 scopus 로고    scopus 로고
    • Comparative genomics of the restriction-modification systems in Helicobacter pylori
    • Lin, L. F., Posfai, J., Roberts, R. J. and Kong, H. (2001) Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc. Natl Acad. Sci. USA, 98, 2740-2745.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 2740-2745
    • Lin, L.F.1    Posfai, J.2    Roberts, R.J.3    Kong, H.4
  • 24
    • 0031987114 scopus 로고    scopus 로고
    • Competence for natural transformation in Neisseria gonorrhoeae: A model system for studies of horizontal gene transfer
    • Koomey, M. (1998) Competence for natural transformation in Neisseria gonorrhoeae: a model system for studies of horizontal gene transfer. APMIS Suppl., 84, 56-61.
    • (1998) APMIS Suppl. , vol.84 , pp. 56-61
    • Koomey, M.1
  • 25
    • 0033852290 scopus 로고    scopus 로고
    • Genetic competence in Helicobacter pylori: Mechanisms and biological implications
    • Hofreuter, D., Odenbreit, S., Pü ls, J., Schwan, D. and Haas, R. (2000) Genetic competence in Helicobacter pylori: mechanisms and biological implications. Res. Microbiol., 151, 487-491.
    • (2000) Res. Microbiol. , vol.151 , pp. 487-491
    • Hofreuter, D.1    Odenbreit, S.2    Ls, P.J.3    Schwan, D.4    Haas, R.5
  • 26
    • 33645550078 scopus 로고    scopus 로고
    • An orphan DNA (cytosine-5-)-methyltransferase in Vibrio cholerae
    • Banerjee, S. and Chowdhury, R. (2006) An orphan DNA (cytosine-5-)- methyltransferase in Vibrio cholerae. Microbiology, 152, 1055-1062.
    • (2006) Microbiology , vol.152 , pp. 1055-1062
    • Banerjee, S.1    Chowdhury, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.