Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 68, Issue 10, 2012, Pages 1153-1157

  Tominaga, Taiga ^a   Watanabe, Satoshi ^a   Matsumi, Rie ^a   Atomi, Haruyuki ^a   Imanaka, Tadayuki ^b   Miki, Kunio ^a  

^a KYOTO UNIVERSITY   (Japan)

^b RITSUMEIKAN UNIVERSITY   (Japan)

Author keywords

NiFe hydrogenase maturation proteins; HypF; Thermococcus kodakarenesis

Indexed keywords

TRANSFERASE;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; THERMOCOCCUS;

CARBOXYL AND CARBAMOYL TRANSFERASES; MODELS, MOLECULAR; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; THERMOCOCCUS;

EID: 84867258784     PISSN: None     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309112036421     Document Type: Article

References (37)

1. Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. (2001). Proc. Natl Acad. Sci. USA, 98, 10037-10041.
2. Blokesch, M., Albracht, S. P., Matzanke, B. F., Drapal, N. M., Jacobi, A. & Bock, A. (2004). J. Mol. Biol. 344, 155-167.
3. Blokesch, M., Paschos, A., Bauer, A., Reissmann, S., Drapal, N. & Bock, A. (2004). Eur. J. Biochem. 271, 3428-3436.
4. Bock, A., King, P. W., Blokesch, M. & Posewitz, M. C. (2006). Adv. Microb. Physiol. 51, 1-71.
5. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998). Acta Cryst. D54, 905-921.
6. Burstel, I., Hummel, P., Siebert, E., Wisitruangsakul, N., Zebger, I., Friedrich, B. & Lenz, O. (2011). J. Biol. Chem. 286, 44937-44944.
7. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
8. Cowtan, K. (1994). Jnt CCP4/ESF-EACBM Newsl. Protein Crystallogr. 31, 34-38.
9. Cowtan, K. (2006). Acta Cryst. D62, 1002-1011.
10. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
11. Fontecilla-Camps, J. C., Volbeda, A., Cavazza, C. & Nicolet, Y. (2007). Chem. Rev. 107, 4273-4303.
12. Gasper, R., Scrima, A. & Wittinghofer, A. (2006). J. Biol. Chem. 281, 27492-27502.
13. Kaluarachchi, H., Chan Chung, K. C. & Zamble, D. B. (2010). Nat. Prod. Rep. 27, 681-694.
14. Kruse, O. & Hankamer, B. (2010). Curr. Opin. Biotechnol. 21, 238-243.
15. Landau, M.,Mayrose, I., Rosenberg, Y., Glaser, F., Martz, E., Pupko, T. & Ben-Tal, N. (2005). Nucleic Acids Res. 33, W299-W302.
16. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
17. Nakamura, T. & Ishikawa, K. (2008). PSSJ Arch. 1, e45.
18. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
19. Paschos, A., Bauer, A., Zimmermann, A., Zehelein, E. & Bock, A. (2002). J. Biol. Chem. 277, 49945-49951.
20. Petkun, S., Shi, R., Li, Y., Asinas, A., Munger, C., Zhang, L., Waclawek, M., Soboh, B., Sawers, R. G. & Cygler, M. (2011). Structure, 19, 1773-1783.
21. Rangarajan, E. S., Asinas, A., Proteau, A., Munger, C., Baardsnes, J., Iannuzzi, P., Matte, A. & Cygler, M. (2008). J. Bacteriol. 190, 1447-1458.
22. Read, R. J. & McCoy, A. J. (2011). Acta Cryst. D67, 338-344.
23. Reissmann, S., Hochleitner, E., Wang, H., Paschos, A., Lottspeich, F., Glass, R. S. & Bock, A. (2003). Science, 299, 1067-1070.
24. Rosano, C., Zuccotti, S., Bucciantini, M., Stefani, M., Ramponi, G. & Bolognesi, M. (2002). J. Mol. Biol. 321, 785-796.
25. Shomura, Y. & Higuchi, Y. (2012). J. Biol. Chem. 287, 28409-28419.
26. Shomura, Y., Komori, H.,Miyabe, N., Tomiyama, M., Shibata, N. & Higuchi, Y. (2007). J. Mol. Biol. 372, 1045-1054.
27. Thauer, R. K., Kaster, A. K., Goenrich, M., Schick, M., Hiromoto, T. & Shima, S. (2010). Annu. Rev. Biochem. 79, 507-536.
28. Theodoratou, E., Huber, R. & Bock, A. (2005). Biochem. Soc. Trans. 33, 108-111.
29. Vagin, A. & Teplyakov, A. (2010). Acta Cryst. D66, 22-25.
30. Vignais, P. M. & Billoud, B. (2007). Chem. Rev. 107, 4206-4272.
31. Volbeda, A. & Fontecilla-Camps, J. C. (2003). Dalton Trans., pp. 4030-4038.
32. Wang, L., Xia, B. & Jin, C. (2007). Biochem. Biophys. Res. Commun. 361, 665-669.
33. Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T. &Miki, K. (2009). J. Mol. Biol. 394, 448-459.
34. Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T. &Miki, K. (2007). Mol. Cell, 27, 29-40.
35. Winkler, M., Kawelke, S. & Happe, T. (2011). Bioresour. Technol. 102, 8493-8500.
36. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
37. Xia, W., Li, H., Sze, K.-H. & Sun, H. (2009). J. Am. Chem. Soc. 131, 10031-10040.