Aquamicrobium ahrensii sp. nov. and Aquamicrobium segne sp. nov., isolated from experimental biofilters

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 10, 2012, Pages 2511-2516

  Lipski, André ^a   Kämpfer, Peter ^b  

^a UNIVERSITY OF BONN   (Germany)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; FATTY ACID; LIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S; UBIDECARENONE;

AQUAMICROBIUM AHRENSII; AQUAMICROBIUM SEGNE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOFILTER; CHEMOTAXONOMY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; RNA GENE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FILTRATION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLLOBACTERIACEAE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; UBIQUINONE;

AQUAMICROBIUM; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 84867171456     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.038224-0     Document Type: Article

References (21)

1. Ahrens, A. (1993). Taxonomische und funktionelle Charakterisierung von Gram-negativen Bakterien aus Biofiltern, die zur Behandlung von Emissionen einer Tierkörperverwertungsanlage eingesetzt wurden. PhD thesis, University of Osnabrück, Germany.
2. Ahrens, A., Lipski, A., Klatte, S., Busse, H.-J., Auling, G. & Altendorf, K. (1997). Polyphasic classification of Proteobacteria isolated from biofilters. Syst Appl Microbiol 20, 255-267.
3. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
4. Bambauer, A., Rainey, F. A., Stackebrandt, E. & Winter, J. (1998). Characterization of Aquamicrobium defluvii gen. nov. sp. nov., a thiophene-2-carboxylate-metabolizing bacterium from activated sludge. Arch Microbiol 169, 293-302.
5. CBN (1977). The nomenclature of lipids. Eur J Biochem 79, 11-21.
6. Choma, A. & Komaniecka, I. (2002). Analysis of phospholipids and ornithine-containing lipids from Mesorhizobium spp. Syst Appl Microbiol 25, 326-331.
7. Doronina, N. V., Kaparullina, E. N., Trotsenko, Y. A., Nörtemann, B., Bucheli-Witschel, M., Weilenmann, H. U. & Egli, T. (2010). Chelativorans multitrophicus gen. nov., sp. nov. and Chelativorans oligotrophicus sp. nov., aerobic EDTA-degrading bacteria. Int J Syst Evol Microbiol 60, 1044-1051.
8. Fritsche, K., Auling, G., Andreesen, J. R. & Lechner, U. (1999). Defluvibacter lusatiae gen. nov., sp. nov., a new chlorophenoldegrading member of the α-2 subgroup of proteobacteria. Syst Appl Microbiol 22, 197-204.
9. Herzog, P., Winkler, I., Wolking, D., Kämpfer, P. & Lipski, A. (2008). Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants. Int J Syst Evol Microbiol 58, 26-33.
10. Kämpfer, P., Martin, E., Lodders, N. & Jäckel, U. (2009). Transfer of Defluvibacter lusatiensis to the genus Aquamicrobium as Aquamicrobium lusatiense comb. nov. and description of Aquamicrobium aerolatum sp. nov. Int J Syst Evol Microbiol 59, 2468-2470.
11. Keswani, J. & Whitman, W. B. (2001). Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int J Syst Evol Microbiol 51, 667-678.
12. Lechner, U., Baumbach, R., Becker, D., Kitunen, V., Auling, G. & Salkinoja-Salonen, M. (1995). Degradation of 4-chloro-2-methylphenol by an activated sludge isolate and its taxonomic description. Biodegradation 6, 83-92.
13. Lipski, A. & Altendorf, K. (1997). Identification of heterotrophic bacteria isolated from ammonia-supplied experimental biofilters. Syst Appl Microbiol 20, 448-457.
14. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
15. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
16. Nichols, P. D., Guckert, J. B. & White, D. C. (1986). Determination of monounsaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts. J Microbiol Methods 5, 49-55.
17. Peix, A., Rivas, R., Trujillo, M. E., Vancanneyt, M., Velázquez, E. & Willems, A. (2005). Reclassification of Agrobacterium ferrugineum LMG 128 as Hoeflea marina gen. nov., sp. nov. Int J Syst Evol Microbiol 55, 1163-1166.
18. Sasser, M. (1990). Identification of bacteria through fatty acid analysis. In Methods in Phytobacteriology, pp. 199-204. Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kiado.
19. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
20. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
21. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.