Characterization of Aquamicrobium defluvii gen. nov. sp. nov., a thiophene-2-carboxylate-metabolizing bacterium from activated sludge

Archives of Microbiology

Volumn 169, Issue 4, 1998, Pages 293-302

  Bambauer, Andreas ^a   Rainey, Fred A ^b   Stackebrandt, Erko ^c   Winter, Josef ^a  

^a UNIVERSITY OF KARLSRUHE   (Germany)

^b LOUISIANA STATE UNIVERSITY   (United States)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

Aquamicrobium defluvii; Molybdenum; Nitrate; Nitrite; Sulfur; Thiophene 2 carboxy CoA ligase; Thiophene 2 carboxyl CoA dehydrogenase; Thiophene 2 carboxyl CoA thioesterase; Thiophene 2 carboxylic acid; Thiosulfate

Indexed keywords

CARBOXYLIC ACID DERIVATIVE; LIGASE; MOLYBDENUM; NITRATE; NITRITE; OXIDOREDUCTASE; OXYGEN; RIBOSOME RNA; RNA 16S; SULFUR; THIOL ESTER HYDROLASE; THIOPHENE DERIVATIVE; THIOSULFATE;

ACTIVATED SLUDGE; AQUAMICROBIUM DEFLUVII; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CLASSIFICATION; ELECTRON TRANSPORT; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NONHUMAN; PRIORITY JOURNAL; RNA GENE;

CELL DIVISION; COENZYME A LIGASES; DNA, RIBOSOMAL; GRAM-NEGATIVE BACTERIA; MICROBIOLOGICAL TECHNIQUES; MOLYBDENUM; PALMITOYL-COA HYDROLASE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEWAGE; SOIL MICROBIOLOGY; THIOPHENES; TUNGSTEN COMPOUNDS;

ALPHAPROTEOBACTERIA; AQUAMICROBIUM DEFLUVII; BACTERIA (MICROORGANISMS); MESORHIZOBIUM; NEGIBACTERIA; PHYLLOBACTERIUM; PROTEOBACTERIA;

EID: 0031959405     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002030050575     Document Type: Article

References (72)

1. Abdulrashid N, Clark DP (1987) Isolation and genetic analysis of mutations allowing the degradation of furans and thiophenes by Escherichia coli. J Bacteriol 169 : 1267-1271
2. Alam KY, Clark DP (1991) Molecular cloning and sequence of the thdF gene, which is involved in thiophene and furan oxidation by Escherichia coli. J Bacteriol 173 : 6018-6024
3. Amphlett MJ, Callely AG (1969) The degradation of 2-thiophenecarboxylic acid by a Flavobacterium species. Biochem J 112 : 12-17
4. Auburger G, Winter J (1992) Purification and characterisation of benzoyl-CoA-ligase from a syntrophic, benzoate-degrading, anaerobic mixed culture. Appl Microbiol Biotechnol 37 : 327-333
5. Auburger G, Winter J (1995) Isolation and physiological characterization of Syntrophus buswellii strain GA from a syntrophic benzoate-degrading, strictly anaerobic coculture. Appl Microbiol Biotechnol 44 : 241-248
6. Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43 : 260-296
7. Bergmeyer HU (1970) Methoden der enzymatischen Analyse, 2nd edn. Verlag Chemie, Weinheim
8. Blaschke M, Kretzer A, Schäfer C, Nagel M, Andreesen JR (1991) Molybdenum-dependent degradation of quinoline by Pseudomonas putida Chin IK and other aerobic bacteria. Arch Microbiol 155 : 164-169
9. Boehringer (1994) Methoden der enzymatischen Bioanalytik und Lebensmittelanalytik. Boehringer, Mannheim
10. Bohlmann F, Zdero C (1985) Naturally occurring thiophenes. In: Gronowitz S (ed) Thiophene and its derivatives, vol 1. Wiley, New York, pp 261-323
11. Bradford MM (1976) A rapid and sensitive method for quantitation of microgram quantities of protein utilizing the principle of protein-dye-binding. Anal Biochem 72 : 248
12. Collins CH, Lyne PM, Grange JM (1989) Collins and Lyne's microbiological methods, 6th edn. Butterworth-Heinemann, Oxford
13. Constanti M, Giralt J, Bordons A, Norris PR (1992) Interactions of thiophenes and acidophilic, thermophilic bacteria. Appl Biochem Biotechnol 34/35 : 767-776
14. Constanti M, Giralt J, Bordons A (1996) Degradation and desulfurization of dibenzothiophenesulfone and other sulfur compounds by Agrobacterium MC 501 and a mixed culture. Enzyme Microb Technol 19 : 214-219
15. Cord-Ruwisch R, Ollivier B (1986) Interspecies hydrogen transfer during methanol degradation by Sporomusa acidovorans and hydrogenophilic anaerobes. Arch Microbiol 144 : 163-165
16. Cripps RE (1973) The microbial metabolism of thiophene-2-carboxylate. Biochem J 134 : 353-366
17. Drews G (1983) Mikrobiologisches Praktikum, 4th edn. Springer, Berlin Heidelberg New York
18. Elkan GH, Bunn CR (1992) The Rhizobia. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH (eds) The prokaryotes, 2nd edn, vol 3. Springer, Berlin Heidelberg New York, pp 2197-2213
19. Ellman GL (1954) Tissue sulfhydryl groups. Arch Biochem Biophys 82 : 70-77
20. Ensley BD (1984) Microbial metabolism of condensed thiophenes. In: Gibson DT (ed) Microbial degradation of aromatic compounds. Dekker, New York, pp 113-128
21. Evans JS, Venables WA (1990) Degradation of thiophene-2-carboxylate, furan-2-carboxylate, pyrrole-2-carboxylate and other thiophene derivatives by the bacterium Vibrio YC1. Appl Microbiol Biotechnol 32 : 715-720
22. Deutsche Einheitsverfahren zur Wasser-, Abwasser-, und Schlammuntersuchung/Fachgruppe Wasserchemie (1979) Verlag Chemie, Weinheim
23. Fedorak PM, Grbic-Galic D (1991) Aerobic microbial cometabolism of benzothiophene and 3-methylbenzothiophene. Appl Environ Microbiol 57 : 932-940
24. Fedorak PM, Peakman TM (1992) Aerobic microbial metabolism of some alkylthiophenes found in petroleum. Biodegradation 2 : 223-236
25. Fedorak PM, Coy DL, Peakman TM (1996) Microbial metabolism of some 2,5-substituted thiophenes. Biodegradation 7 : 313-327
26. Felsenstein J (1993) PHYLIP (phylogenetic inference package) version 3.5.1. Department of Genetics, University of Washington, Seattle
27. Fetzner S, Lingens F (1993) Purification and some properties of the molybdenum- and iron-containing quinaldic acid 4-oxidoreductase from Serratia marcescens 2CC-1. Biol Chem Hoppe Seyler 374 : 363-376
28. Freudenberg W, Koenig K, Andreesen JR (1988) Nicotine dehydrogenase from Arthrobacter oxidans: a molybdenum-containing hydroxylase. FEMS Microbiol Lett 52 : 13-18
29. Gilchrist TL (1995) Heterozyklenchemie. VCH, Weinheim
30. Izumi J, Ohshiro T, Ogino H, Hine Y, Shimao M (1994) Selective desulfurization of dibenzothiophene by Rhodococcus erythropolis D-1. Appl Environ Microbiol 60 : 223-226
31. Jarvis BDW, Pankhurst E, Patel JJ (1982) Rhizobium loti, a new species of legume root nodule bacteria. Int J Syst Bacteriol 32 : 378-380
32. Juhl MJ, Clark DP (1990) Thiophene-degrading Escherichia coli mutants possess sulfon oxidase activity and show altered resistance to sulfur-containing antibiotics. Appl Environ Microbiol 56 : 3179-3185
33. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 211-232
34. Kaiser JP, Feng Y, Bollag JM (1996) Microbial metabolism of pyridine, quinoline, acridine, and their derivatives under aerobic and anaerobic conditions. Microbiol Rev 60 : 483-498
35. Kanagawa T, Kelly DP (1987) Degradation of substituted thiophenes by bacteria isolated from activated sludge. Microb Ecol 13 : 47-57
36. Kargi F (1984) Microbial desulfurization of coal. Adv Biotech Proc 3 : 241-272
37. Keddie RM, Cure GL (1977) The cell wall composition and distribution of free mycolic acids in named strains of coryneform bacteria and in various natural sources. J Appl Bacteriol 42 : 229-252
38. Kilbane JJ (1989) Desulfurization of coal: the microbial solution. Tibtech 7 : 97-101
39. Koenig K, Andreesen JR (1989) Molybdenum involvement in aerobic degradation of 2-furoic acid by Pseudomonas putida Fu1. Appl Environ Microbiol 55 : 1829-1834
40. Koenig K, Andreesen JR (1990) Xanthine dehydrogenase and 2-furoyl-Coenzyme A dehydrogenase from Pseudomonas putida Fu1: two molybdenum-containing dehydrogenases of novel structural composition. J Bacteriol 172 : 5999-6009
41. Koenig K, Andreesen JR (1991) Aerobic and anaerobic degradation of furan-3-carboxylate by Paracoccus denitrificans strain MK 33. Arch Microbiol 157 : 70-75
42. Krawiec S (1990) Bacterial desulfurization of thiophenes: screening techniques and some speculations regarding the biochemical and genetic bases. Dev Ind Microbiol 31 : 103-114 (J Ind Microbiol [Suppl 5])
43. Kretzer A, Andreesen JR (1991) A new pathway for isonicotinate degradation by Mycobacterium sp. INA1. J Gen Microbiol 137 : 1073-1080
44. Kuhn EP, Suflita JM (1989) Microbial degradation of nitrogen, oxygen and sulfur heterocyclic compounds under anaerobic conditions: studies with aquifer samples. Environ Toxicol Chem 8 : 1149-1158
45. Kurita S, Endo T, Nakamura H, Yagi T, Tamiya N (1971) Decomposition of some organic sulfur compounds in petroleum by anaerobic bacteria. J Gen Appl Microbiol 17 : 185-198
46. Küver J, Xu Y, Gibson J (1995) Metabolism of cyclohexane carboxylic acid by the photosynthetic bacterium Rhodopseudomonas palustris. Arch Microbiol 164 : 337-345
47. Lange B, Vejdelek ZJ (1980) Photometrische Analyse, Verlag, Chemie, Weinheim
48. Maidak BL et al. (1994) The ribosomal data base project. Nucleic Acids Res 22 : 3485-3487
49. Merck E (ed) (1986) Nährböden Handbuch. Merck, Darmstadt, Germany
50. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 : 159-167
51. Mills CF, Bremner J (1980) Nutritional aspects of molybdenum in animals. In: Coughlan MP (ed) Molybdenum and molybdenum containing enzymes. Pergamon Press, Oxford, pp 517-542
52. Minnikin DE, Alshamaony L, Goodfellow M (1975) Differentiation of Mycobacterium, Nocardia, and related taxa by thinlayer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88 : 200-204
53. Monticello DJ, Finnerty WR (1985) Microbial desulfurization of fossil fuels. Annu Rev Microbiol 39 : 371-389
54. Nagel M, Andreesen JR (1989) Molybdenum-dependent degradation of nicotinic acid by Bacillus sp. DSM 2923. FEMS Microbiol Lett 59 : 147-152
55. Ohshiro T, Hirata T, Izumi Y (1996) Desulfurization of dibenzothiophene derivatives by whole cells of Rhodococcus erythropolis H-2. FEMS Microbiol Lett 142 : 65-70
56. Pfenning N (1978) Rhodocyclus purpureus gen. nov. and sp. nov., a ring-shaped, vitamin B12 - requiring member of the family Rhodospirillaceae. Int J Syst Bacteriol 28 : 283-288
57. Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46 : 1088-1092
58. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 : 406-425
59. Sauter M, Tshisuaka B, Fetzner S, Lingens F (1993) Quinaldic acid 4-oxidoreductase from Pseudomonas sp. AK-2 compared to other procaryotic molybdenum-containing hydroxylases. Biol Chem Hoppe Seyler 374 : 1037-1046
60. Schwarz G, Lingens F (1994) Bacterial degradation of N-heterocyclic compounds. In: Ratledge C (ed) Biochemistry of microbial degradation. Kluyver, Dordrecht Boston London, pp 459-486
61. Siegmund I, Koenig K, Andreesen JR (1990) Molybdenum involvement in aerobic degradation of picolinic acid by Arthrobacter picolinophilus. FEMS Microbiol Lett 67 : 281-284
62. Siller H, Rainey FR, Stackebrandt E, Winter J (1996) Isolation and characterization of a new gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov. Int J Syst Bacteriol 46 : 1125-1130
63. Sims GK, O'Loughlin EJ (1989) Degradation of pyridines in the environment. Crit Rev Environ Control 19 : 309-340
64. Tamaoka J, Komagata K (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25 : 125-128
65. Tanaka H, Maeda H, Suzuki H, Kamibayashi A, Tonomura K (1982) Metabolism of thiophene-2-carboxylate by a photosynthetic bacterium. Agric Biol Chem 46: 1429-1438
66. Trudgill PW (1969) The metabolism of 2-furoic acid by Pseudomonas F2. Biochem J 113 : 577-587
67. Van Afferden van M, Schacht S, Klein J, Trüper HG (1990) Degradation of dibenzothiophene by Brevibacterium sp. DO. Arch Microbiol 153 : 324-328
68. Villemur R (1995) Coenzyme A ligases involved in anaerobic biodegradation of aromatic compounds. Can J Microbiol 41 : 855-861
69. Wang P, Krawiec S (1994) Desulfurization of dibenzothiophene to 2-hydroxybiphenyl by some newly isolated bacterial strains. Arch Microbiol 161 : 266-271
70. Widdel F, Kohring GW, Mayer F (1983) Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids. 3. Characterization of the filamentous gliding Desulfonema limicola gen. nov. spec. nov. and Desulfonema magman sp. nov. Arch Microbiol 134 : 286-294
71. Winter J, Braun E, Zabel HP (1987) Acetomicrobium faecalis spec, nov., a strictly anaerobic bacterium from sewage sludge, producing ethanol from pentoses. Syst Appl Microbiol 9 : 71-76
72. Wood JL (1987) Sulfane sulfur. In: Colowick SP, Kaplan HD (eds) Methods in enzymology, vol 143. Academic Press, pp 25-29