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Volumn 192, Issue 2, 2012, Pages 609-617

Estimating population-level coancestry coefficients by an admixture F model

Author keywords

[No Author keywords available]

Indexed keywords

ADMIXTURE F MODEL; ALLELE; ARTICLE; BAYES THEOREM; EVOLUTION; GENE FREQUENCY; GENE LOCUS; GENE MUTATION; GENETIC VARIABILITY; MIGRATION; NONHUMAN; POPULATION GENETICS; POPULATION MODEL; POPULATION SIZE; PRIORITY JOURNAL; PUNGITIUS; PUNGITIUS PUNGITIUS; SHREW; SIMULATION; SOREX ARANEUS; STATISTICAL MODEL;

EID: 84867154432     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.140871     Document Type: Article
Times cited : (45)

References (38)
  • 1
    • 0035513938 scopus 로고    scopus 로고
    • Coalescence time for two genes from a subdivided population
    • Bahlo, M., and R. C. Griffiths, 2001 Coalescence time for two genes from a subdivided population. J. Math. Biol. 43: 397-410.
    • (2001) J. Math. Biol , vol.43 , pp. 397-410
    • Bahlo, M.1    Griffiths, R.C.2
  • 2
    • 0042634161 scopus 로고    scopus 로고
    • Likelihood-based inference for genetic correlation coefficients
    • Balding, D. J., 2003 Likelihood-based inference for genetic correlation coefficients. Theor. Popul. Biol. 63: 221-230.
    • (2003) Theor. Popul. Biol , vol.63 , pp. 221-230
    • Balding, D.J.1
  • 3
    • 34249731366 scopus 로고    scopus 로고
    • Model fitting and inference under latent equilibrium processes
    • Bhattacharya, S., A. E. Gelfand, and K. E. Holsinger, 2007 Model fitting and inference under latent equilibrium processes. Stat. Comput. 17: 193-208.
    • (2007) Stat. Comput , vol.17 , pp. 193-208
    • Bhattacharya, S.1    Gelfand, A.E.2    Holsinger, K.E.3
  • 4
    • 51849096303 scopus 로고    scopus 로고
    • Comparison of marker-based pairwise relatedness estimators on a pedigreed plant population
    • Bink, M. C. A. M., A. D. Anderson, W. E. Van De Weg, and E. A. Thompson, 2008 Comparison of marker-based pairwise relatedness estimators on a pedigreed plant population. Theor. Appl. Genet. 117: 843-855.
    • (2008) Theor. Appl. Genet , vol.117 , pp. 843-855
    • Bink, M.C.A.M.1    Anderson, A.D.2    Van De Weg, W.E.3    Thompson, E.A.4
  • 5
    • 7044264955 scopus 로고    scopus 로고
    • How to track and assess genotyping errors in population genetics studies
    • Bonin, A., E. Bellemain, P. B. Eidesen, F. Pompanon, C. Brochmann et al., 2004 How to track and assess genotyping errors in population genetics studies. Mol. Ecol. 13: 3261-3273.
    • (2004) Mol. Ecol , vol.13 , pp. 3261-3273
    • Bonin, A.1    Bellemain, E.2    Eidesen, P.B.3    Pompanon, F.4    Brochmann, C.5
  • 6
    • 33749867438 scopus 로고    scopus 로고
    • Population structure within and between subspecies of the Mediterranean triplefin fish Tripterygion delaisi revealed by highly polymorphic microsatellite loci
    • Carreras-Carbonell, J., E. Macpherson, and M. Pascual, 2006 Population structure within and between subspecies of the Mediterranean triplefin fish Tripterygion delaisi revealed by highly polymorphic microsatellite loci. Mol. Ecol. 15: 3527-3539.
    • (2006) Mol. Ecol , vol.15 , pp. 3527-3539
    • Carreras-Carbonell, J.1    Macpherson, E.2    Pascual, M.3
  • 7
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • Coop, G., D. Witonsky, A. Di Rienzo, and J. K. Pritchard, 2010 Using environmental correlations to identify loci underlying local adaptation. Genetics 185: 1411-1423.
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Di Rienzo, A.3    Pritchard, J.K.4
  • 8
    • 70349506039 scopus 로고    scopus 로고
    • Detecting loci under selection in a hierarchically structured population
    • Excoffier, L., T. Hofer, and M. Foll, 2009 Detecting loci under selection in a hierarchically structured population. Heredity 103: 285-298.
    • (2009) Heredity , vol.103 , pp. 285-298
    • Excoffier, L.1    Hofer, T.2    Foll, M.3
  • 9
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., M. Stephens, and J. K. Pritchard, 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 10
    • 33645888671 scopus 로고    scopus 로고
    • A new method to estimate relatedness from molecular markers
    • Fernandez, J., and M. A. Toro, 2006 A new method to estimate relatedness from molecular markers. Mol. Ecol. 15: 1657-1667.
    • (2006) Mol. Ecol , vol.15 , pp. 1657-1667
    • Fernandez, J.1    Toro, M.A.2
  • 11
    • 17444411951 scopus 로고    scopus 로고
    • Bayesian models for the analysis of genetic structure when populations are correlated
    • Fu, R., D. K. Dey, and K. E. Holsinger, 2005 Bayesian models for the analysis of genetic structure when populations are correlated. Bioinformatics 21: 1516-1529.
    • (2005) Bioinformatics , vol.21 , pp. 1516-1529
    • Fu, R.1    Dey, D.K.2    Holsinger, K.E.3
  • 12
    • 77955730167 scopus 로고    scopus 로고
    • Quantifying population structure using the F-model
    • Gaggiotti, O. E., and M. Foll, 2010 Quantifying population structure using the F-model. Mol. Ecol. Res. 10: 821-830.
    • (2010) Mol. Ecol. Res , vol.10 , pp. 821-830
    • Gaggiotti, O.E.1    Foll, M.2
  • 14
    • 0004125042 scopus 로고
    • Lawrence Erlbaum, Hillsdale, NJ
    • Gorsuch, R. L., 1983 Factor Analysis. Lawrence Erlbaum, Hillsdale, NJ.
    • (1983) Factor Analysis
    • Gorsuch, R.L.1
  • 15
    • 85007320774 scopus 로고
    • FSTAT (Version 1.2): A computer program to calculate F-statistics
    • Goudet, J., 1995 FSTAT (Version 1.2): a computer program to calculate F-statistics. J. Hered. 86: 485-486.
    • (1995) J. Hered , vol.86 , pp. 485-486
    • Goudet, J.1
  • 16
    • 0022854639 scopus 로고
    • Shrews on small islands: Epigenetic variation elucidates population stability
    • Hanski, I., and J. Kuitunen, 1986 Shrews on small islands: epigenetic variation elucidates population stability. Holarct. Ecol. 9: 193-204.
    • (1986) Holarct. Ecol , vol.9 , pp. 193-204
    • Hanski, I.1    Kuitunen, J.2
  • 17
    • 24644446846 scopus 로고    scopus 로고
    • A standardized genetic differentiation measure
    • Hedrick, P. W., 2005 A standardized genetic differentiation measure. Evolution 59: 1633-1638.
    • (2005) Evolution , vol.59 , pp. 1633-1638
    • Hedrick, P.W.1
  • 18
    • 77950402162 scopus 로고    scopus 로고
    • Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates
    • Herrmann, D., B. N. Poncet, S. Manel, D. Rioux, L. Gielly et al., 2010 Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates. Genome 53: 302-310.
    • (2010) Genome , vol.53 , pp. 302-310
    • Herrmann, D.1    Poncet, B.N.2    Manel, S.3    Rioux, D.4    Gielly, L.5
  • 19
    • 51649095312 scopus 로고    scopus 로고
    • G(ST) and its relatives do not measure differentiation
    • Jost, L., 2008 G(ST) and its relatives do not measure differentiation. Mol. Ecol. 17: 4015-4026.
    • (2008) Mol. Ecol , vol.17 , pp. 4015-4026
    • Jost, L.1
  • 22
    • 70349999410 scopus 로고    scopus 로고
    • CoCoa: A software tool for estimating the coefficient of coancestry from multilocus genotype data
    • Maenhout, S., B. De Baets, and G. Haesaert, 2009 CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data. Bioinformatics 25: 2753-2754.
    • (2009) Bioinformatics , vol.25 , pp. 2753-2754
    • Maenhout, S.1    de Baets, B.2    Haesaert, G.3
  • 23
    • 0036603630 scopus 로고    scopus 로고
    • Adaptive population divergence: Markers, QTL and traits
    • Mckay, J. K., and R. G. Latta, 2002 Adaptive population divergence: markers, QTL and traits. Trends Ecol. Evol. 17: 285-291.
    • (2002) Trends Ecol. Evol , vol.17 , pp. 285-291
    • McKay, J.K.1    Latta, R.G.2
  • 24
    • 0035670347 scopus 로고    scopus 로고
    • Comparison of genetic differentiation at marker loci and quantitative traits
    • Merilä, J., and P. Crnokrak, 2001 Comparison of genetic differentiation at marker loci and quantitative traits. J. Evol. Biol. 14: 892-903.
    • (2001) J. Evol. Biol , vol.14 , pp. 892-903
    • Merilä, J.1    Crnokrak, P.2
  • 26
    • 42249093178 scopus 로고    scopus 로고
    • Bayesian methods for analyzing movements in heterogeneous landscapes from mark-recapture data
    • Ovaskainen, O., H. Rekola, E. Meyke, and E. Arjas, 2008 Bayesian methods for analyzing movements in heterogeneous landscapes from mark-recapture data. Ecology 89: 542-554.
    • (2008) Ecology , vol.89 , pp. 542-554
    • Ovaskainen, O.1    Rekola, H.2    Meyke, E.3    Arjas, E.4
  • 27
    • 80053965730 scopus 로고    scopus 로고
    • A new method to uncover signatures of divergent and stabilizing selection in quantitative traits
    • Ovaskainen, O., M. Karhunen, C. Zheng, J. M. C. Arias, and J. Merilä, 2011 A new method to uncover signatures of divergent and stabilizing selection in quantitative traits. Genetics 189: 621-632.
    • (2011) Genetics , vol.189 , pp. 621-632
    • Ovaskainen, O.1    Karhunen, M.2    Zheng, C.3    Arias, J.M.C.4    Merilä, J.5
  • 28
    • 85047682725 scopus 로고    scopus 로고
    • Inbreeding and relatedness coefficients: What do they measure?
    • Rousset, F., 2002 Inbreeding and relatedness coefficients: What do they measure? Heredity 88: 371-380
    • (2002) Heredity , vol.88 , pp. 371-380
    • Rousset, F.1
  • 30
    • 77950196958 scopus 로고    scopus 로고
    • History vs. habitat type: Explaining the genetic structure of European nine-spined stickleback (Pungitius pungitius) populations
    • Shikano, T., Y. Shimada, G. Herczeg, and J. Merila, 2010 History vs. habitat type: explaining the genetic structure of European nine-spined stickleback (Pungitius pungitius) populations. Mol. Ecol. 19: 1147-1161.
    • (2010) Mol. Ecol , vol.19 , pp. 1147-1161
    • Shikano, T.1    Shimada, Y.2    Herczeg, G.3    Merila, J.4
  • 31
    • 0026050476 scopus 로고
    • Inbreeding coefficients and coalescence times
    • Slatkin, M., 1991 Inbreeding coefficients and coalescence times. Genet. Res. 58: 167-175.
    • (1991) Genet. Res , vol.58 , pp. 167-175
    • Slatkin, M.1
  • 32
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • Slatkin, M., 1995 A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • Slatkin, M.1
  • 33
    • 77749261628 scopus 로고    scopus 로고
    • Estimating divergence parameters with small samples from a large number of loci
    • Wang, Y., and J. Hey, 2010 Estimating divergence parameters with small samples from a large number of loci. Genetics 184: 363-379.
    • (2010) Genetics , vol.184 , pp. 363-379
    • Wang, Y.1    Hey, J.2
  • 34
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population-structure
    • Weir, B. S., and C. C. Cockerham, 1984 Estimating F-statistics for the analysis of population-structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 35
    • 0036957370 scopus 로고    scopus 로고
    • Estimating F-statistics
    • Weir, B. S., and W. G. Hill, 2002 Estimating F-statistics. Annu. Rev. Genet. 36: 721-750.
    • (2002) Annu. Rev. Genet , vol.36 , pp. 721-750
    • Weir, B.S.1    Hill, W.G.2
  • 36
    • 79952449963 scopus 로고    scopus 로고
    • G9(ST) and D not replace F(ST)
    • Whitlock, M. C., 2011 G9(ST) and D not replace F(ST). Mol. Ecol. 20: 1083-1091.
    • (2011) Mol. Ecol , vol.20 , pp. 1083-1091
    • Whitlock, M.C.1
  • 37
    • 0041878887 scopus 로고    scopus 로고
    • Coalescence times and F-ST values in subdivided populations with symmetric structure
    • Wilkinson-Herbots, H. M., 2003 Coalescence times and F-ST values in subdivided populations with symmetric structure. Adv. Appl. Probab. 35: 665-690.
    • (2003) Adv. Appl. Probab , vol.35 , pp. 665-690
    • Wilkinson-Herbots, H.M.1
  • 38
    • 4744346139 scopus 로고    scopus 로고
    • The effect of unequal migration rates on F(ST)
    • Wilkinson-Herbots, H. M., and R. Ettridge, 2004 The effect of unequal migration rates on F(ST). Theor. Popul. Biol. 66: 185-197.
    • (2004) Theor. Popul. Biol , vol.66 , pp. 185-197
    • Wilkinson-Herbots, H.M.1    Ettridge, R.2


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