Genetic diversity characterization of porcine reproductive and respiratory syndrome virus isolates in Romania, based on phylogenetic analysis

International Journal of Molecular Sciences

Volumn 13, Issue 9, 2012, Pages 12046-12061

  Zaulet, Mihaela ^a   Gurau, Maria Rodica ^b   Petrovan, Vlad ^a   Buburuzan, Laura ^a  

^a UNIVERSITY OF BUCHAREST   (Romania)

^b UNIVERSITY OF AGRONOMIC SCIENCES AND VETERINARY MEDICINE OF BUCHAREST   (Romania)

Author keywords

ORF5; ORF7; Phylogeny; Porcine reproductive and respiratory virus; Swine

Indexed keywords

NUCLEOCAPSID PROTEIN; PROTEIN GP5; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANIMAL TISSUE; ARTERIVIRUS; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC VARIABILITY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME 5 GENE; OPEN READING FRAME 7 GENE; ROMANIA; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS ISOLATION; VIRUS TRANSCRIPTION;

PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; SUIDAE; SUS;

EID: 84866948597     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms130912046     Document Type: Article

References (27)

1. Wensvoort, G.; Terpstra, C.; Pol, J.M.; ter Laak, E.A.; Bloemraad, M.; de Kluyver, E.P.; Kragten, C.; van Buiten, L.; den Besten, A.; Wagenaar, F. et al. Mystery swine disease in The Netherlands: The isolation of Lelystad virus. Vet. Q. 1991, 13, 121-130.
2. Benfield, D.A.; Nelson, E.; Collins, J.E.; Harris, L.; Goyal, S.M.; Robison, D.; Christianson, W.T.; Morrison, R.B.; Gorcyca, D.; Chladek, D. Characterization of swine infertility and respiratory syndrome (SIRS) virus (isolate ATCC VR-2332). J. Vet. Diagn. Investig. 1992, 4, 127-133.
3. Plagemann, P.G.W.; Rowland, R.R.; Even, C.; Faaberg, K.S. Lactate dehydrogenase-elevating virus: An ideal persistent virus? Springer Semin. Immunopathol. 1995, 17, 167-186.
4. Cavanagh, D. Nidovirales: A new order comprising Coronaviridae and Arteriviridae. Arch. Virol. 1997,142, 629-633.
5. Paton, D.J. Porcine reproductive and respiratory syndrome (blue-eared pig disease). Rev. Med. Microbiol. 1995, 6, 119-125.
6. Meulenberg, J.J.; Hulst, M.M.; de Meijer, E.J.; Moonen, P.L.; den Besten, A.; de Kluyver, E.P.; Wensvoort, G.; Moormann, R.J. Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology 1993, 192, 62-72.
7. Wootton, S.K.; Yoo, D.; Rogan, D. Full-length sequence of a Canadian porcine reproductive and respiratory syndrome virus (PRRSV) isolate. Arch. Virol. 2000, 145, 2297-2323.
8. Nelsen, C.J.; Murtaugh, M.P.; Faaberg, K.S. Porcine reproductive and respiratory syndrome virus comparison: Divergent evolution on two continents. J. Virol. 1999, 73, 270-280.
9. Thompson, J.D.; Higgins, D.G.; Gibson, T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res.1994, 22, 4673-4680.
10. Stadejek, T.; Oleksiewicz, M.B.; Scherbakov, A.V.; Timina, A.M.; Krabbe, J.S.; Chabros, K.; Potapchuk, D. Definition of subtypes in the European genotype of porcine reproductive and respiratory syndrome virus: Nucleocapsid characteristics and geographical distribution in Europe. Arch. Virol. 2008, 153, 1479-1488.
11. Le Cam, L. Maximum likelihood: An introduction. Int. Stat. Rev. 1990, 58, 153-171.
12. Felsenstein, J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39, 783-791.
13. Tamura, K.; Nei, M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10, 512-526.
14. Tamura, K.; Kumar, S. Evolutionary distance estimation under heterogeneous substitution pattern among lineages. Mol. Biol. Evol. 2002, 19, 1727-1736.
15. Tamura, K.; Peterson, D.; Peterson, N.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28, 2731-2739.
16. Kapur, V.; Elam, M.R.; Pawlovich, T.M.; Murtaugh, M.P. Genetic variation in porcine reproductive and respiratory syndrome virus isolates in the Midwestern United States. J. Gen. Virol. 1996, 77, 1271-1276.
17. Andreyev, V.G.; Wesley, R.D.; Mengling, W.L.; Vorwald, A.C.; Lager, K.M. Genetic variation and phylogenetic relationships of 22 porcine reproductive and respiratory syndrome virus (PRRSV) field strains based on sequence analysis of open reading frame 5. Arch. Virol. 1997, 142, 993-1001.
18. Meulenberg, J.J.; Petersen-Den Besten, A.; de Kluyver, E.P.; Moormann, R.J.; Schaaper, W.M.; Wensvoort, G. Characterization of proteins encoded by ORFs 2 to 7 of Lelystad virus. Virology 1995, 206, 155-163.
19. Zhou, Y.J.; Yu, H.; Tian, Z.J.; Li, G.X.; Hao, X.F.; Yan, L.P.; Peng, J.M.; An, T.Q.; Xu, A.T.; Wang, Y.X.; et al. Genetic diversity of the ORF5 gene of porcine reproductive and respiratory syndrome virus isolates in China from 2006 to 2008. Virus Res. 2009, 144, 136-144.
20. Dea, S.; Gagnon, C.A.; Mardassi, H.; Pirzadeh, B.; Rogan, D. Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: Comparison of the North American and European isolates. Arch. Virol. 2000, 145, 659-688.
21. Meng, X.J.; Paul, P.S.; Halbur, P.G.; Lum, M.A. Phylogenetic analysis of the putative M (ORF6) and N (ORF7) genes of porcine reproductive and respiratory syndrome virus (PRRSV): Implication for the existence of two genotypes of PRRSV in the US and Europe. Arch. Virol. 1995, 140, 745-755.
22. Zhou, Y.J.; An, T.Q.; Liu, J.X.; Qiu, H.J.; Wang, Y.F.; Tong, G.Z. Identification of a conserved epitope cluster in the N protein of porcine reproductive and respiratory syndrome virus. Viral Immunol. 2006, 19, 383-390.
23. Wootton, S.; Koljesar, G.; Yang, L.; Yoon, K.J.; Yoo, D. Antigenic importance of the carboxy-terminal-strand of the porcine reproductive and respiratory syndrome virus nucleocapsid protein. Clin. Diagn. Lab. Immunol. 2001, 8, 598-603.
24. Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41, 95-98.
25. Tamura, K.; Dudley, J.; Nei, M.; Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24, 1596-1599.
26. Tajima, F.; Nei, M. Estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 1984, 1, 269-285.
27. Zaulet, M.; Nicolae, I.; Toana, A.; Baraitareanu, S.; Otelea, M.R.; Stadejek, T. Genetic characterization of Romanian porcine reproductive and respiratory syndrome viruses based on ORF7 nucleoprotein gene sequences. Rom. Biotechnol. Lett. 2011, 6, 6800-6808.