Erratum to: A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast (Theor Appl Genet, (2012), 125, (551–559), 10.1007/s00122-012-1852-4);A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast

Theoretical and Applied Genetics

Volumn 125, Issue 3, 2012, Pages 551-559

  Fukuoka, S ^a   Mizobuchi, R ^a   Saka, N ^c   Ivan, S ^d   Matsumoto, T ^a   Okuno, K ^a,b   Yano, M ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c Aichi Ken Agricultural Research Center   (Japan)

^d All Russian Research Institute of Rice   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASE CONTROL; GENES; PLANTS (BOTANY);

CHROMOSOMAL REGIONS; CHROMOSOME SEGMENT SUBSTITUTION LINES; GENETIC BACKGROUNDS; LEUCINE-RICH REPEATS; MEDIATED RESISTANCES; NUCLEOTIDE-BINDING SITES; QUANTITATIVE TRAIT LOCUS; RESISTANT CULTIVARS;

BLAST RESISTANCE;

EID: 84866887549     PISSN: 00405752     EISSN: 14322242     Source Type: Journal    
DOI: 10.1007/s00122-014-2295-x     Document Type: Erratum

References (82)

1. Abe S, Suga R, Ono S (1976) Inheritance of the blast-resistance of upland rice varieties. Part 3. Test for genotype of the true resistance. (in Japanese). Bull Ibaraki Agric Exp Stn 17: 77-82.
2. Akagi H, Yokozeki Y, Inagaki A, Fujimura T (1996) Microsatellite DNA markers for rice chromosomes. Theor Appl Genet 93: 1071-1077.
3. Ali ML, Sanchez PL, Yu S-B, Lorieux M, Eizenga GC (2010) Chromosome segment substitution lines: a powerful tool for the introgression of valuable genes from Oryza wild species into cultivated rice (O. sativa). Rice 3: 218-234.
4. Ashikawa I, Hayashi N, Yamane H, Kanamori H, Wu J, Matsumoto T, Ono K, Yano M (2008) Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer pikm-specific rice blast resistance. Genetics 180: 2267-2276.
5. Bai J, Pennill LA, Ning J, Lee SW, Ramalingam J, Webb CA, Zhao B, Sun Q, Nelson JC, Leach JE, Hulbert SH (2002) Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res 12: 1871-1884.
6. Bennetzen JL, Hulbert SH (1992) Organization, instability and evolution of plant disease resistance genes. Plant Mol Biol 20: 575-578.
7. Bonman JM, Khush GS, Nelson RJ (1992) Breeding rice for resistance to pests. Annu Rev Phytopathol 30: 507-528.
8. Brown JK (2002) Yield penalties of disease resistance in crops. Curr Opin Plant Biol 5: 339-344.
9. Courtois B, Shen L, Petalcorin W, Carandang S, Mauleon R, Li Z (2003) Locating QTLs controlling constitutive root traits in the rice population IAC 165 × Co39. Euphytica 134: 335-345.
10. Dixon MS, Jones DA, Keddie JS, Thomas CM, Harrison K, Jones JD (1996) The tomato Cf-2 disease resistance locus comprises two functional genes encoding leucine-rich repeat proteins. Cell 84: 451-459.
11. Ebana K, Yonemaru J, Fukuoka S, Iwata H, Kanamori H, Namiki N, Nagasaki H, Yano M (2010) Genetic structure revealed by a whole-genome single-nucleotide polymorphism survey of diverse accessions of cultivated Asian rice (Oryza sativa L.). Breed Sci 60: 390-397.
12. Ebitani T, Takeuchi Y, Nonoue Y, Yamamoto T, Takeuchi K, Yano M (2005) Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari'. Breed Sci 55: 65-73.
13. Eshed Y, Zamir D (1995) An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141: 1147-1162.
14. Ezuka A (1972) Field resistance of rice varieties to rice blast disease. Rev Plant Prot Res 5: 1-21.
15. Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM et al (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269: 496-512.
16. Fukuoka S, Okuno K (2001) QTL analysis and mapping of pi21, a recessive gene for field resistance to rice blast in Japanese upland rice. Theor Appl Genet 103: 185-190.
17. Fukuoka S, Saka N, Koga H, Ono K, Shimizu T, Ebana K, Hayashi N, Takahashi A, Hirochika H, Okuno K, Yano M (2009) Loss of function of a proline-containing protein confers durable disease resistance in rice. Science 325: 998-1001.
18. Fukuoka S, Nonoue Y, Yano M (2010) Germplasm enhancement by developing advanced plant materials from diverse rice accessions. Breed Sci 60: 509-517.
19. Goto I (1988) Genetic studies on resistance of rice plant to blast fungus (VII). Blast resistance genes of Kuroka. Ann Phytopath Soc 54: 460-465.
20. Greenberg JT, Yao N (2004) The role and regulation of programmed cell death in plant-pathogen interactions. Cell Microbiol 6: 201-211.
21. Hayashi K, Yoshida H (2009) Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter. Plant J 57: 413-425.
22. Higashi T (1995) Genetic studies on field resistance of rice to blast disease. (In Japanese). Bull Tohoku Natl Agric Exp Stn 35: 438-448.
23. Higashi T, Kushibuchi K (1978) Genetics analysis of field resistance to leaf blast (Pyricularia oryzae) in rice. Jpn J Breed 28: 277-286.
24. Hirabayashi H, Sato H, Nonoue Y, Kuno-Takemoto Y, Takeuchi Y, Kato H, Nemoto H, Ogawa T, Yano M, Imbe T, Ando I (2010) Development of introgression lines derived from Oryza rufipogon and O. glumaepatula in the genetic background of japonica cultivated rice (O. sativa L.) and evaluation of resistance to rice blast. Breed Sci 60: 604-612.
25. Howell PM, Lydiate DJ, Marshall DF (1996) Towards developing intervarietal substitution lines in Brassica napus using marker-assisted selection. Genome 39: 348-358.
26. Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, Deng L, Li W, Lu Y, Weng Q, Liu K, Huang T, Zhou T, Jing Y, Lin Z, Buckler ES, Qian Q, Zhang QF, Li J, Han B (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet 42: 961-967.
27. Huang H, Huang L, Feng G, Wang S, Wang Y, Liu J, Jiang N, Yan W, Xu L, Sun P, Li Z, Pan S, Liu X, Xiao Y, Liu E, Dai L, Wang GL (2011) Molecular mapping of the new blast resistance genes Pi47 and Pi48 in the durably resistant local rice cultivar Xiangzi 3150. Phytopathology 101: 620-626.
28. Ikeda H, Kamoshita A, Manabe T (2007) Genetic analysis of rooting ability of transplanted rice (Oryza sativa L.) under different water conditions. J Exp Bot 58: 309-318.
29. IRGSP (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
30. Jia Y, Liu G (2011) Mapping quantitative trait loci for resistance to rice blast. Phytopathology 101: 176-181.
31. Kato T, Endo I, Yano M, Sasaki T, Inoue M, Kudo S (2002) Mapping of quantitative trait loci for field resistance to rice blast in upland rice, 'Sensho' (in Japanese). Breed Res 3: 119-124.
32. Kiyosawa S (1982) Genetic and epidemiological modeling of breakdown of plant disease resistance. Annu Rev Phytopathol 20: 93-117.
33. Koide Y, Telebanco-Yanoria MJ, Dela Pena F, Fukuta Y, Kobayashi N (2011) Characterization of application for mapping a resistance gene, Pi19(t). J Phytopathol 159: 85-93.
34. Kubo T, Aida Y, Nakamura K, Tsunematsu H, Doi K, Yoshimura A (2002) Reciprocal chromosome segment substitution series derived from Japonica and Indica cross of rice (Oryza sativa L.). Breed Sci 52: 319-325.
35. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY et al (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat Genet 8: 365-372.
36. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newberg LA (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
37. Lee SK, Song MY, Seo YS, Kim HK, Ko S, Cao PJ, Suh JP, Yi G, Roh JH, Lee S, An G, Hahn TR, Wang GL, Ronald P, Jeon JS (2009) Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two CC-NB-LRR genes. Genetics 181: 1627-1638.
38. Lin F, Chen S, Que Z, Wang L, Liu X, Pan Q (2007) The blast resistance gene Pi37 encodes a nucleotide binding site leucine-rich repeat protein and is a member of a resistance gene cluster on rice chromosome 1. Genetics 177: 1871-1880.
39. Liu J, Liu X, Dai L, Wang G (2007) Recent progress in elucidating the structure, function and evolution of disease resistance genes in plants. J Genet Genomics 34: 765-776.
40. Liu Y, Zhu XY, Zhang S, Bernardo M, Edwards J, Galbraith DW, Leach J, Zhang G, Liu B, Leung H (2011) Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice. Theor Appl Genet 122: 341-353.
41. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9: 199-207.
42. McHale L, Tan X, Koehl P, Michelmore RW (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biol 7: 212.
43. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8: 1113-1130.
44. Miyamoto M, Yano M, Hirasawa H (2001) Mapping of quantitative trait loci conferring blast field resistance in the Japanese upland rice variety. Kahei Breed Sci 54: 257-261.
45. Morimoto T (1980) Breeding by Chinese upland rice Sensho. (in Japanese). In: Yamasaki Y, Kozaka T (eds) Rice blast disease and breeding for resistance to blast. Hakuyusha, Tokyo, pp 25-34.
46. Nagamura Y, Antonio BA, Sato Y, Miyao A, Namiki N, Yonemaru J, Minami H, Kamatsuki K, Shimura K, Shimizu Y, Hirochika H (2011) Rice TOGO Browser: a platform to retrieve integrated information for rice functional and applied genomics. Plant Cell Physiol 52: 230-237.
47. Nagasaki H, Ebana K, Shibaya T, Yonemaru J, Yano M (2010) Core single-nucleotide polymorphisms-a tool for genetic analysis of the Japanese rice population. Breed Sci 60: 648-655.
48. Nguyen TT, Koizumi S, La TN, Zenbayashi KS, Ashizawa T, Yasuda N, Imazaki I, Miyasaka A (2006) Pi35(t), a new gene conferring partial resistance to leaf blast in the rice cultivar Hokkai 188. Theor Appl Genet 113: 697-704.
49. Okuyama Y, Kanzaki H, Abe A, Yoshida K, Tamiru M, Saitoh H, Fujibe T, Matsumura H, Shenton M, Galam DC, Undan J, Ito A, Sone T, Terauchi R (2011) A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes. Plant J 66: 467-479.
50. Osoegawa K, Woon PY, Zhao B, Frengen E, Tateno M, Catanese JJ, de Jong PJ (1998) An improved approach for construction of bacterial artificial chromosome libraries. Genomics 52: 1-8.
51. Ou S-H (1985) Rice diseases, 2nd edn. Commonwealth Agricultural Bureaux, Slough.
52. Parlevliet JE (1979) Components of resistance that reduce the rate of epidemic development. Annu Rev Phytopathol 17: 203-222.
53. Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL (2006) The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice. Genetics 172: 1901-1914.
54. Rao ZM, Wu JL, Zhuang JY, Chai RY, Fan YY, Leung H, Zheng KL (2005) Genetic dissections of partial resistances to leaf and neck blast in rice (Oryza sativa L.). Yi Chuan Xue Bao 32: 555-565.
55. Richter TE, Ronald PC (2000) The evolution of disease resistance genes. Plant Mol Biol 42: 195-204.
56. Ruge-Wehling B, Linz A, Habekuss A, Wehling P (2006) Mapping of Rym16Hb, the second soil-borne virus-resistance gene introgressed from Hordeum bulbosum. Theor Appl Genet 113: 867-873.
57. Saito K, Hayano-Saito Y, Maruyama-Funatsuki W, Sato Y, Kato A (2004) Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice. Theor Appl Genet 109: 515-522.
58. Saka N (2006) A rice (Oryza sativa L.) breeding for field resistance to blast disease (Pyricularia oryzae) in Mountainous Region Agricultural Research Institute, Aichi Agricultural Research Center of Japan. Plant Prod Sci 9: 3-9.
59. Sakata K, Nagamura Y, Numa H, Antonio BA, Nagasaki H, Idonuma A, Watanabe W, Shimizu Y, Horiuchi I, Matsumoto T, Sasaki T, Higo K (2002) RiceGAAS: an automated annotation system and database for rice genome sequence. Nucleic Acids Res 30: 98-102.
60. Sardesai N, Kumar A, Rajyashri R, Nair S, Mohan M (2002) Identification and mapping of an AFLP marker linked to Gm7, a gall midge resistance gene and its conversion to a SCAR marker for its utility in marker aided selection in rice. Theor Appl Genet 105: 691-698.
61. Shi X, Wang J, Bao Y, Li P, Xie L, Huang J, Zhang H (2010) Identification of the quantitative trait loci in Japonica rice landrace Heikezijing responsible for broad-spectrum resistance to rice blast. Phytopathology 100: 822-829.
62. Suh JP, Roh JH, Cho YC, Han SS, Kim YG, Jena KK (2009) The Pi40 gene for durable resistance to rice blast and molecular analysis of Pi40-advanced backcross breeding lines. Phytopathology 99: 243-250.
63. Takahashi A, Hayashi N, Miyao A, Hirochika H (2010) Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging. BMC Plant Biol 10: 175.
64. Takai T, Kondo M, Yano M, Yamamoto T (2010) A quantitative trait locus for chlorophyll content and its association with leaf photosynthesis in rice. Rice 3: 172-180.
65. Terashima T, Fukuoka S, Saka N, Kudo S (2008) Mapping of a blast field resistance gene Pi39(t) of elite rice strain Chubu 111. Plant Breed 127: 485-489.
66. Wang GL, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ (1994) RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136: 1421-1434.
67. Wang GL, Ruan DL, Song WY, Sideris S, Chen L, Pi LY, Zhang S, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald PC (1998) Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell 10: 765-779.
68. Wang ZX, Yano M, Yamanouchi U, Iwamoto M, Monna L, Hayasaka H, Katayose Y, Sasaki T (1999) The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19: 55-64.
69. Wei F, Wing RA, Wise RP (2002) Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley. Plant Cell 14: 1903-1917.
70. Wu JL, Fan YY, Li DB, Zheng KL, Leung H, Zhuang JY (2005) Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates. Theor Appl Genet 111: 50-56.
71. Xiao S, Ellwood S, Calis O, Patrick E, Li T, Coleman M, Turner JG (2001) Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8. Science 291: 118-120.
72. Xu X, Chen H, Fujimura T, Kawasaki S (2008) Fine mapping of a strong QTL of field resistance against rice blast, Pikahei-1(t), from upland rice Kahei, utilizing a novel resistance evaluation system in the greenhouse. Theor Appl Genet 117: 997-1008.
73. Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G (2010) Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.). BMC Genomics 11: 656.
74. Yamamoto T, Yonemaru J, Yano M (2009) Towards the understanding of complex traits in rice: substantially or superficially? DNA Res 16: 141-154.
75. Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11: 267.
76. Yano M, Sasaki T (1997) Genetic and molecular dissection of quantitative traits in rice. Plant Mol Biol 35: 145-153.
77. Yonemaru J, Yamamoto T, Fukuoka S, Uga Y, Hori K, Yano M (2010) Q-TARO: QTL annotation rice online database. Rice 3: 194-203.
78. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95: 1663-1668.
79. Yoshimura A, Nagayama H, Sobrizal, Kurakazu T, Sanchez PL, Doi K, Yamagata Y, Yasui H (2010) Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng. Breed Sci 60: 597-603.
80. Zenbayashi K, Ashizawa T, Tani T, Koizumi S (2002) Mapping of the QTL (quantitative trait locus) conferring partial resistance to leaf blast in rice cultivar Chubu 32. Theor Appl Genet 104: 547-552.
81. Zenbayashi-Sawata K, Fukuoka S, Katagiri S, Fujisawa M, Matsumoto T, Ashizawa T, Koizumi S (2007) Genetic and physical mapping of the partial resistance gene, Pi34, to blast in rice. Phytopathology 97: 598-602.
82. Zhang H-B, Zhao X, Ding X, Paterson AH, Wing RA (1995) Preparation of megabase-size DNA from plant nuclei. Plant J 7: 175-184.